BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470263
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02920.1 | Symbols: ATGSTF7, GST11, ATGSTF8, GSTF7, ATGST11 ... 1203 0.0
AT1G02930.1 | Symbols: ATGSTF6, GST1, ERD11, ATGSTF3, GSTF6, AT... 1033 0.0
> AT1G02920.1 | Symbols: ATGSTF7, GST11, ATGSTF8, GSTF7, ATGST11
| glutathione S-transferase 7 | chr1:658657-659771 REVERSE
LENGTH=925
Length=925
Score = 1203 bits (651), Expect = 0.0
Identities = 705/732 (96%), Gaps = 0/732 (0%)
Strand=Plus/Plus
Query 4 TTAACAAATGGGAGGAATCAAAGTTTTCGGTCACCCAGCTTCCACAGCCACTAGAAGAGT 63
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTAACAAATGGCAGGAATCAAAGTTTTCGGTCACCCAGCTTCCACAGCCACTAGAAGAGT 119
Query 64 TCTCATCGCTCTACACGAGAAGAATCTCGACTTCGAATTCGTTCATATCGAGCTCAAAGA 123
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 120 TCTCATCGCTCTTCACGAGAAGAATCTCGACTTTGAATTCGTTCATATCGAGCTCAAAGA 179
Query 124 TGGTGAACACAAGAAAGAGCCTTTCATCTTTCGCAACCCTTTTGGTAAAGTTCCAGCCTT 183
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 TGGTGAACACAAGAAAGAGCCTTTCATCTTCCGCAACCCTTTTGGTAAAGTTCCAGCCTT 239
Query 184 TGAAGATGGAGACTTGAAGCTTTTCGAATCAAGAGCAATTACTCAATACATAGCTCATTT 243
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 TGAAGATGGAGACTTCAAGCTTTTCGAATCAAGAGCAATCACTCAATACATAGCTCATTT 299
Query 244 TTACTCAGACAAAGGAAACCAACTTGTCTCCCTTGGCTCCAAGGCCATTGCGGTCATAGC 303
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 300 TTACTCAGACAAAGGAAACCAACTTGTCTCCCTTGGCTCCAAGGACATTGCGGGCATAGC 359
Query 304 CATGGGCATTGAAATTGAATCGCATGAGTTTGACCCAGTTGGTTCAAAGCTTGTTTGGGA 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CATGGGCATTGAAATTGAATCGCATGAGTTTGACCCAGTTGGTTCAAAGCTTGTTTGGGA 419
Query 364 GCAAGTCTTTAAGCCTTTGTATGGTATGACCACAGACAAAACCGTTGTTGAAGAGGAAGA 423
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 GCAAGTCTTAAAGCCTTTGTATGGTATGACCACAGACAAAACCGTTGTTGAAGAAGAAGA 479
Query 424 GGTTAAGTTAGCCAAAGTTCTCGATGTTTACGAACACAGGCTTGGTGAGTCTAAGTATTT 483
|| |||| ||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 GGCTAAGCTAGCCAAGGTCCTCGATGTTTACGAACACAGGCTTGGTGAGTCCAAGTATTT 539
Query 484 GGCTTCTGACCACTTCACTTTGGTCGATCTTCACACTATCCCTGTGATTCAATACTTGCT 543
||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 GGCTTCTGATAAATTCACTTTGGTCGATCTTCACACTATCCCTGTGATTCAGTACTTGCT 599
Query 544 TGGTACTCCAACTAAGAAACTCTTCGACGAGCGTCCACATGTCAGTGCTTGGGTTGCTGA 603
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 TGGTACACCAACTAAGAAACTCTTTGACGAGCGTCCACATGTCAGTGCTTGGGTTGCTGA 659
Query 604 TATCACTTCTAGGCCTTCTGCTCAGAAGGTTCTTTAAGCGAATCAAAAACTGTTAATCAG 663
||||||||||||||||||||| ||||||||||||||| || ||| ||||||||||||||
Sbjct 660 CATCACTTCTAGGCCTTCTGCTAAGAAGGTTCTTTAAGTGACTCACAAACTGTTAATCAG 719
Query 664 AAGATTGAATAAAGTGGCGATGACCTCATTGCCCCAATTCTCATAAACAATAAAAGTGGC 723
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 720 AAGATTGAATAAAGTGGCGATGACCTCATTGCCCTAATTCTCATAAACAATAAAAGTGGC 779
Query 724 GATGACCTAAtt 735
||||||||||||
Sbjct 780 GATGACCTAATT 791
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 774 TTGGTTTGAATGTAATCTTCAATAATAA 801
||||||||||||||||||||||||||||
Sbjct 849 TTGGTTTGAATGTAATCTTCAATAATAA 876
> AT1G02930.1 | Symbols: ATGSTF6, GST1, ERD11, ATGSTF3, GSTF6,
ATGST1 | glutathione S-transferase 6 | chr1:661177-662427 REVERSE
LENGTH=1049
Length=1049
Score = 1033 bits (559), Expect = 0.0
Identities = 668/718 (93%), Gaps = 17/718 (2%)
Strand=Plus/Plus
Query 3 ATTAACAAATGGGAGGAATCAAAGTTTTCGGTCACCCAGCTTCCACAGCCACTAGAAGAG 62
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 ATTAACAAATGGCAGGAATCAAAGTTTTCGGTCACCCAGCTTCCACAGCCACTAGAAGAG 288
Query 63 TTCTCATCGCTCTACACGAGAAGAATCTCGACTTCGAATTCGTTCATATCGAGCTCAAAG 122
||||||||||||| |||||||||||| ||||||| |||||||||||| ||||||||||||
Sbjct 289 TTCTCATCGCTCTTCACGAGAAGAATGTCGACTTTGAATTCGTTCATGTCGAGCTCAAAG 348
Query 123 ATGGTGAACACAAGAAAGAGCCTTTCATCTTTCGCAACCCTTTTGGTAAAGTTCCAGCCT 182
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 349 ATGGTGAACACAAGAAAGAGCCTTTCATCCTTCGCAACCCCTTTGGTAAAGTTCCAGCCT 408
Query 183 TTGAAGATGGAGACTTGAAGCTTTTCGAATCAAGAGCAATTACTCAATACATAGCTCAT- 241
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 409 TTGAAGATGGAGACTTCAAGATTTTCGAATCAAGAGCAATTACTCAATACATAGCTCATG 468
Query 242 TTTTACTCAGACAAAGGAAACCAA-CTTGTCTC-CCTTGGCTCCAAGGCCATTGCGGTCA 299
|| ||||||||||||||| ||| ||| |||| | ||| ||||| ||| ||| |||
Sbjct 469 AATT-CTCAGACAAAGGAAA-CAACCTTCTCTCAAC-TGG---CAAGGACATGGCGATCA 522
Query 300 TAGCCATGGGCATTGAAATTGAATCGCATGAGTTTGACCCAGTTGGTTCAAAGCTTGTTT 359
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 523 TAGCCATGGGCATTGAAATTGAGTCGCATGAGTTTGACCCAGTTGGTTCAAAGCTTGTTT 582
Query 360 GGGAGCAAGTCTTTAAGCCTTTGTATGGTATGACCACAGACAAAACCGTTGTTGAAGAGG 419
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 583 GGGAGCAAGTCTTAAAGCCTTTGTATGGTATGACCACAGACAAAACCGTTGTTGAAGAAG 642
Query 420 AAGAGGTTAAGTTAGCCAAAGTTCTCGATGTTTACGAACACAGGCTTGGTGAGTCTAAGT 479
|||||| |||| |||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 643 AAGAGGCTAAGCTAGCCAAAGTCCTCGATGTTTACGAACACAGGCTTGGTGAGTCCAAGT 702
Query 480 ATTTGGCTTCTGACCACTTCACTTTGGTCGATCTTCACACTATCCCTGTGATTCAATACT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 ATTTGGCTTCTGACCACTTCACTTTGGTCGATCTTCACACTATCCCTGTGATTCAATACT 762
Query 540 TGCTTGGTACTCCAACTAAGAAACTCTTCGACGAGCGTCCACATGTCAGTGCTTGGGTTG 599
| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 763 TACTTGGAACTCCAACTAAGAAACTCTTCGACGAGCGTCCACATGTGAGTGCTTGGGTTG 822
Query 600 CTGATATCACTTCTAGGCCTTCTGCTCAGAAGGTTCTTTAAGCGAATCAAAAACTGTT-A 658
|||| |||||||| |||||||||||||||||||||||||||| ||||| ||||| || |
Sbjct 823 CTGACATCACTTCAAGGCCTTCTGCTCAGAAGGTTCTTTAAGTGAATCTCAAACTATTTA 882
Query 659 ---ATCAGAAGAT-TGAATAAA-GTGGCGATGACCTCATTGCCCCAATTCTCATAAAC 711
|||||||||| | |||||| ||||||||||||| ||||||| |||||||||||||
Sbjct 883 TCGATCAGAAGATGT-AATAAAAGTGGCGATGACCTAATTGCCC-AATTCTCATAAAC 938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5