BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470264
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02930.1 | Symbols: ATGSTF6, GST1, ERD11, ATGSTF3, GSTF6, AT... 1365 0.0
AT1G02920.1 | Symbols: ATGSTF7, GST11, ATGSTF8, GSTF7, ATGST11 ... 994 0.0
> AT1G02930.1 | Symbols: ATGSTF6, GST1, ERD11, ATGSTF3, GSTF6,
ATGST1 | glutathione S-transferase 6 | chr1:661177-662427 REVERSE
LENGTH=1049
Length=1049
Score = 1365 bits (739), Expect = 0.0
Identities = 866/926 (94%), Gaps = 14/926 (2%)
Strand=Plus/Plus
Query 1 TTTTATCCaaaaaataaaaat-aaaaaGAGTATTCAAGATTGGTGGCGCCTTTTGCTTTT 59
|||||||||||||| ||||| |||||||||||||||| ||||||||||| |||| ||||
Sbjct 35 TTTTATCCAAAAAA-CAAAATAAAAAAGAGTATTCAAGCTTGGTGGCGCCGTTTG-TTTT 92
Query 60 T-GTTTATTCACT-AAGTTACTCTG-TTTAGTTGTATAAATACACTTC-CCCA-TTGTGT 114
| ||||||||||| ||||||||||| ||||||||||||||||||| | |||| ||||||
Sbjct 93 TGGTTTATTCACTAAAGTTACTCTGTTTTAGTTGTATAAATACAC-ACTCCCATTTGTGT 151
Query 115 ATTTCTTTTCATCAACCACAAAGATCTCTCTACTTCAACAAATCTCCACATTACTTTTAA 174
||||||||||||||| |||||||||||||||||||||| |||||||||| |||| |||||
Sbjct 152 ATTTCTTTTCATCAATCACAAAGATCTCTCTACTTCAATAAATCTCCACCTTAC-TTTAA 210
Query 175 GAACaaaaaaaaaaCAGCGTTAACTAATGGCAGGAATCAAAGTTTTTGGCCACCCAGCTT 234
|||||| ||||| |||| ||||| ||||||||||||||||||||| || ||||||||||
Sbjct 211 GAACAAGAAAAACACAGTATTAACAAATGGCAGGAATCAAAGTTTTCGGTCACCCAGCTT 270
Query 235 CCACAGCCACGAGAAGAGTTCTCATCGCTCTACACGAGAAGAATGTCGACTTTGAATTCG 294
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 271 CCACAGCCACTAGAAGAGTTCTCATCGCTCTTCACGAGAAGAATGTCGACTTTGAATTCG 330
Query 295 TTCATGTCGAGCTCAAAGATGGTGAACACAAGAAAGAGCCTTACATCCTTCGCAACCCCT 354
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 331 TTCATGTCGAGCTCAAAGATGGTGAACACAAGAAAGAGCCTTTCATCCTTCGCAACCCCT 390
Query 355 TTGGTAAAGTTCCAGCCTTTGAAGATGGAGACTTCAAGATTTTCGAGTCAAGAGCAATCA 414
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 391 TTGGTAAAGTTCCAGCCTTTGAAGATGGAGACTTCAAGATTTTCGAATCAAGAGCAATTA 450
Query 415 CTCAATACATAGCTCATGAATTCTCAGACAAAGGAAACAACCTTCTCTCAGCTGGCAAAG 474
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 451 CTCAATACATAGCTCATGAATTCTCAGACAAAGGAAACAACCTTCTCTCAACTGGCAAGG 510
Query 475 ACATGGCGATCATAGCCATGGGCATTGAAATTGAATCGCATGAGTTTGATCCAGTTGGTT 534
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 511 ACATGGCGATCATAGCCATGGGCATTGAAATTGAGTCGCATGAGTTTGACCCAGTTGGTT 570
Query 535 CCAAGCTTGTTTGGGAGCAAGTCTTGAAGCCTTTGTATGGTATGACCACAGACAAAACCG 594
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 571 CAAAGCTTGTTTGGGAGCAAGTCTTAAAGCCTTTGTATGGTATGACCACAGACAAAACCG 630
Query 595 TTGTTGAAGAAGAAGAGGCTAAGTTAGCCAAAGTCCTCGATGTTTACGAACACAGGCTTG 654
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 631 TTGTTGAAGAAGAAGAGGCTAAGCTAGCCAAAGTCCTCGATGTTTACGAACACAGGCTTG 690
Query 655 GTGAGTCTAAGTATTTGGCTGCTGATCACTTCACTTTGGTCGATCTTCACACTATCCCTG 714
||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 691 GTGAGTCCAAGTATTTGGCTTCTGACCACTTCACTTTGGTCGATCTTCACACTATCCCTG 750
Query 715 TGATTCAGTACTTGCTTGGAACTCCAACTAAGAAACTCTTCGACGAGCGTCCACATGTCA 774
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 751 TGATTCAATACTTACTTGGAACTCCAACTAAGAAACTCTTCGACGAGCGTCCACATGTGA 810
Query 775 GTGCTTGGGTTGCTGACATCACTTCTAGGCCTTCTGCTCAAAAGGTTCTTTAAGTGAATC 834
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 811 GTGCTTGGGTTGCTGACATCACTTCAAGGCCTTCTGCTCAGAAGGTTCTTTAAGTGAATC 870
Query 835 AGAAG--ATTTGAATAAAAGTGGCGATGAAATAAAAGTGGCGATGACCTAATTGCCCAAT 892
|| |||| | | | | |||| |||||||||||||||||||||||||||||||
Sbjct 871 TCAAACTATTT-A-TCGATCAGAAGATGTAATAAAAGTGGCGATGACCTAATTGCCCAAT 928
Query 893 TCTCATCAACTCTGTTTTTCTTTTTG 918
|||||| |||||||||||||||||||
Sbjct 929 TCTCATAAACTCTGTTTTTCTTTTTG 954
> AT1G02920.1 | Symbols: ATGSTF7, GST11, ATGSTF8, GSTF7, ATGST11
| glutathione S-transferase 7 | chr1:658657-659771 REVERSE
LENGTH=925
Length=925
Score = 994 bits (538), Expect = 0.0
Identities = 714/792 (90%), Gaps = 39/792 (5%)
Strand=Plus/Plus
Query 125 ATCAACCACAAAGATCTCTCTACTTCAACAAATCTCCACATTACTTTTAAGAACaaaaaa 184
|||||||||||||||||||||||||||| |||||||||| || | |||||||||
Sbjct 1 ATCAACCACAAAGATCTCTCTACTTCAATAAATCTCCACCTTGC-TTTAAGAAC------ 53
Query 185 aaaaCAG-CGTTAACTAATGGCAGGAATCAAAGTTTTTGGCCACCCAGCTTCCACAGCCA 243
|| || | ||||| ||||||||||||||||||||| || |||||||||||||||||||
Sbjct 54 --AA-AGTC-TTAACAAATGGCAGGAATCAAAGTTTTCGGTCACCCAGCTTCCACAGCCA 109
Query 244 CGAGAAGAGTTCTCATCGCTCTACACGAGAAGAATGTCGACTTTGAATTCGTTCATGTCG 303
| |||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||
Sbjct 110 CTAGAAGAGTTCTCATCGCTCTTCACGAGAAGAATCTCGACTTTGAATTCGTTCATATCG 169
Query 304 AGCTCAAAGATGGTGAACACAAGAAAGAGCCTTACATCCTT-CGCAACCCCTTTGGTAAA 362
||||||||||||||||||||||||||||||||| ||| ||| |||||||| |||||||||
Sbjct 170 AGCTCAAAGATGGTGAACACAAGAAAGAGCCTTTCAT-CTTCCGCAACCCTTTTGGTAAA 228
Query 363 GTTCCAGCCTTTGAAGATGGAGACTTCAAGATTTTCGAGTCAAGAGCAATCACTCAATAC 422
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 229 GTTCCAGCCTTTGAAGATGGAGACTTCAAGCTTTTCGAATCAAGAGCAATCACTCAATAC 288
Query 423 ATAGCTCATGAATT-CTCAGACAAAGGAAA-CAACCTTCTCTCAGC-TGG---CAAAGAC 476
||||||||| || ||||||||||||||| ||| ||| |||| | ||| ||| |||
Sbjct 289 ATAGCTCAT-TTTTACTCAGACAAAGGAAACCAA-CTTGTCTC-CCTTGGCTCCAAGGAC 345
Query 477 ATGGCGATCATAGCCATGGGCATTGAAATTGAATCGCATGAGTTTGATCCAGTTGGTTCC 536
|| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 346 ATTGCGGGCATAGCCATGGGCATTGAAATTGAATCGCATGAGTTTGACCCAGTTGGTTCA 405
Query 537 AAGCTTGTTTGGGAGCAAGTCTTGAAGCCTTTGTATGGTATGACCACAGACAAAACCGTT 596
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 406 AAGCTTGTTTGGGAGCAAGTCTTAAAGCCTTTGTATGGTATGACCACAGACAAAACCGTT 465
Query 597 GTTGAAGAAGAAGAGGCTAAGTTAGCCAAAGTCCTCGATGTTTACGAACACAGGCTTGGT 656
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 466 GTTGAAGAAGAAGAGGCTAAGCTAGCCAAGGTCCTCGATGTTTACGAACACAGGCTTGGT 525
Query 657 GAGTCTAAGTATTTGGCTGCTGATCACTTCACTTTGGTCGATCTTCACACTATCCCTGTG 716
||||| |||||||||||| ||||| | |||||||||||||||||||||||||||||||||
Sbjct 526 GAGTCCAAGTATTTGGCTTCTGATAAATTCACTTTGGTCGATCTTCACACTATCCCTGTG 585
Query 717 ATTCAGTACTTGCTTGGAACTCCAACTAAGAAACTCTTCGACGAGCGTCCACATGTCAGT 776
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 586 ATTCAGTACTTGCTTGGTACACCAACTAAGAAACTCTTTGACGAGCGTCCACATGTCAGT 645
Query 777 GCTTGGGTTGCTGACATCACTTCTAGGCCTTCTGCTCAA-AAGGTTCTTTAAGTGAATCA 835
|||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||
Sbjct 646 GCTTGGGTTGCTGACATCACTTCTAGGCCTTCTGCT-AAGAAGGTTCTTTAAGTGACTCA 704
Query 836 GAAGA-T-TTGAATAA-AAGTGGCGAT-GAAATAAAAGTGGCGATGACCTAATTGCCC-A 890
|| | | || ||| | ||| || ||| |||| ||||||||||||| ||||||| |
Sbjct 705 CAA-ACTGTT-AATCAGAAG-----ATTGAA-TAAA-GTGGCGATGACCTCATTGCCCTA 755
Query 891 ATTCTCATCAAC 902
|||||||| |||
Sbjct 756 ATTCTCATAAAC 767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5