BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470268
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02950.2 | Symbols: ATGSTF4, GST31, GSTF4 | glutathione S-tr... 1382 0.0
AT1G02952.1 | Symbols: | other RNA | chr1:665354-666367 FORWAR... 248 7e-65
> AT1G02950.2 | Symbols: ATGSTF4, GST31, GSTF4 | glutathione S-transferase
F4 | chr1:665168-666452 REVERSE LENGTH=910
Length=910
Score = 1382 bits (748), Expect = 0.0
Identities = 857/908 (94%), Gaps = 13/908 (1%)
Strand=Plus/Plus
Query 1 AAACTAAACAATTCTATCTATATAGTATATATGGACTGCTTACAGATGGTGTTCAAGTTA 60
||| ||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3 AAATTAAACAAGTGTATCTATATCGTATATATGGACTGCTTACAGATGGTGTTCAAGTTA 62
Query 61 TTGCCAAACTGGAAACGTGAGGCAGAAGTTAAAAAGCTCGTTGCAGGTTACAAGGTTCAT 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 TTTCCAAACTGGAAACGTGAGGCAGAAGTTAAAAAGCTCGTTGCAGGTTACAAGGTTCAT 122
Query 121 GGCGATCCTTTCTCCACCAACACAAGGCGTGTCCTCGCTGTTCTCCATGAGAAAGGACTC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 123 GGCGATCCTTTCTCCACCAACACAAGGCGTGTCCTCGCTGTTCTCCATGAGAAAAGACTC 182
Query 181 TCTTACGAGCCCATTACCGTCAAATTGCAAACCGGTGAACACAAAAGGGAACCTTTCCTC 240
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 183 TCTTACGAGCCTATTACCGTCAAATTGCAAACCGGTGAACACAAAACCGAACCTTTCCTC 242
Query 241 TCTCTCAACCCATTTGGTCAAGTCCCTGTTTTTGAAGATGGAAATGTTAAGCTGTATGAA 300
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 243 TCTCTCAACCCATTTGGTCAAGTCCCTGTTTTTGAGGATGGAAGTGTTAAGCTGTATGAA 302
Query 301 TCCCGAGCCATCACGCAATACATTGCATATGTTCATAGCTCAAGAGGCACACAGCTTCTG 360
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 303 TCCCGAGCCATCACACAATACATCGCATATGTTCATAGCTCAAGAGGCACACAGCTTCTG 362
Query 361 AATCTTAGAAGTCACGAGACAATGGCAACTCTAACAATGTGGATGGAAATCGAAGCTCAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 AATCTTAGAAGTCACGAGACAATGGCAACTCTAACAATGTGGATGGAAATCGAAGCTCAT 422
Query 421 CAGTTTGATCCACCCGCATCAAAACTCACTTGGGAACAAGTCATTAAGCCTATCTACGGT 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 423 CAGTTTGATCCACCCGCATCGAAACTCACTTGGGAACAAGTCATTAAGCCTATCTACGGT 482
Query 481 CTAGAGACTGACCAAACAATCGTCAAAGAGAACGAGGCTATTCTAGAGAAAGTTCTAAAC 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 CTAGAGACTGACCAAACAATCGTCAAAGAGAACGAGGCTATTCTAGAGAAAGTTCTAAAT 542
Query 541 ATCTACGAGAAACGACTCGAAGAATCTAGATTCTTGGCTTGTAATAGCTTTACTTTGGTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 ATCTACGAGAAACGACTCGAAGAATCTAGATTCTTGGCTTGTAATAGCTTTACTTTGGTT 602
Query 601 GATCTTCATCACCTACCAAACATACAATACCTTTTGGGAACTCCAACAAAGATACTGTTC 660
||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||
Sbjct 603 GATCTTCATCACCTACCAAACATACAATACCTTTTGGGAACTCCAACGAAGAAATTGTTC 662
Query 661 GAAAAACGAACCAAAGTGCGTAAGTGGGTGGAGGAGATTACGAGTAGAGAGGCTTGGAAG 720
|||||| || | |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 663 GAAAAAAGATCTAAAGTGCGTAAGTGGGTGGATGAGATTACGAGTAGAGAGGCTTGGAAA 722
Query 721 ATGGCCTGTGATCAAGAGAAATCTTGGTCTAATAAGCAAAGGAACTAAATGAAAGCAGAA 780
||||| |||||||||||||||||||||| |||||||| |||||||||| |||||||||||
Sbjct 723 ATGGCATGTGATCAAGAGAAATCTTGGTTTAATAAGCCAAGGAACTAACTGAAAGCAGAA 782
Query 781 GTAAAGTTTAtgtgtgaatgaaagtgtttgtgt--gttgagtttgggtctttgttcgtaa 838
|||| |||| ||||||||| |||| ||||| |||||||||||||||||||| ||||
Sbjct 783 GTAATCTTTACGTGTGAATGTGTGTGTATGTGTATGTTGAGTTTGGGTCTTTGTTTGTAA 842
Query 839 gcttgtg--tgttgtttgttgc-ttggtgAATCTTATAAGATGCGTTGTGTTTGATTAAT 895
||||||| ||||||||||||| ||| ||||||||| | || |||||| |||||
Sbjct 843 GCTTGTGCGTGTTGTTTGTTGCCTTGC-GAATCTTAT----T---TTATGTTTGGTTAAT 894
Query 896 ATATGTTT 903
||||||||
Sbjct 895 ATATGTTT 902
> AT1G02952.1 | Symbols: | other RNA | chr1:665354-666367 FORWARD
LENGTH=422
Length=422
Score = 248 bits (134), Expect = 7e-65
Identities = 142/146 (97%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 100 GTTGCAGGTTACAAGGTTCATGGCGATCCTTTCTCCACCAACACAAGGCGTGTCCTCGCT 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 GTTGCAGGTTACAAGGTTCATGGCGATCCTTTCTCCACCAACACAAGGCGTGTCCTCGCT 259
Query 160 GTTCTCCATGAGAAAGGACTCTCTTACGAGCCCATTACCGTCAAATTGCAAACCGGTGAA 219
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 258 GTTCTCCATGAGAAAAGACTCTCTTACGAGCCTATTACCGTCAAATTGCAAACCGGTGAA 199
Query 220 CACAAAAGGGAACCTTTCCTCTCTCT 245
||||||| |||||||||||||||||
Sbjct 198 CACAAAACCGAACCTTTCCTCTCTCT 173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44105581066
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5