BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470271
Length=1548
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02960.2 | Symbols: | unknown protein; BEST Arabidopsis tha... 2237 0.0
AT1G02965.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 292 5e-78
> AT1G02960.2 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G02965.1);
Has 100 Blast hits to 99 proteins in 48 species: Archae -
0; Bacteria - 4; Metazoa - 26; Fungi - 13; Plants - 29; Viruses
- 0; Other Eukaryotes - 28 (source: NCBI BLink). | chr1:666872-669837
REVERSE LENGTH=1610
Length=1610
Score = 2237 bits (1211), Expect = 0.0
Identities = 1461/1576 (93%), Gaps = 39/1576 (2%)
Strand=Plus/Plus
Query 1 AACGACGGTACAAAGGCGAACACCGGCGAGATCGATTTGAACGGTGACGGCTAATGTGGC 60
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 12 AACGACGGTACAAAGGCGAACACCGGCAAGATCGATTTGAACGGTGACGGCGAATGTGGC 71
Query 61 GGCGAAGTAACTTACCGGTGAATCCAGATTCCGATCAGAGCATATCTGAGGAAGAGGAGG 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 72 GGCGAAGTAACTTACCGGGGAATCCAGATTCCGATCAGAGCATATCTGAGGAAGA--A-G 128
Query 121 AGGAGCAAAATGATCTGTGGCC-AAGCGAGAATGCAAAGGAAGAAGAGGGAGGATTACTA 179
| || |||||||| | | ||| ||| |||||||| |||||| ||||| |||||||||||
Sbjct 129 A--AG-AAAATGATATTTCGCCGAAG-GAGAATGCGAAGGAACAAGAGAGAGGATTACTA 184
Query 180 CTTCAAACAAAGCTCGAAAAACTCATAGGTTGTGGTGAACTAAATTATGCTAGGGATCCC 239
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 185 CTTCAAACAAAGCTCGAAAAACTCATAGGTTGTGGTGAGCTAAATTATGCTAGGGAAACC 244
Query 240 GGTGATGTAACTCTGGAAGCAACTCTACGGAAGATATCA-----TC--G--GATGTCGTC 290
||||||||||||||||||||||||||||||||||||||| || | ||||| |||
Sbjct 245 GGTGATGTAACTCTGGAAGCAACTCTACGGAAGATATCATCCTCTCTTGAAGATGTGGTC 304
Query 291 CAAGTTCCTGATTCCCCTGAGGAGAG-TAGT-TTTACTTCTTCAAGAAGAACAGGATTTG 348
|||||||||| ||||| |||||||| || | ||| ||||||| |||||||| ||||| |
Sbjct 305 GAAGTTCCTGACTCCCCCGAGGAGAGTTA-TATTT-CTTCTTCCAGAAGAACTGGATTAG 362
Query 349 CATGCATATCTGCTCAGGAAAGCGGGTCAGATGATGAGATTCCACATGATGAACAAGTGG 408
||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 363 CATGCATATCTGCTCAGGAAAATGGGTCAGATGATGAGATTACACATGATGAACAAGTGG 422
Query 409 CAACTTGGTCTGCTATTAGTAAAGAAACCAAGTCACTAACCCATTTGAATGGTATTGCTT 468
|||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 423 CAACTTGGTCTGCTATAAGTAAAGAAACCAAGTCACTAATCCATTTGAATGGTGTTGCTT 482
Query 469 CAGTCGCATCATCCCATCTATCTGGCTTCAGAGCCAAGAGAAGTAGTAAAGTTGTCAAAG 528
||||||||||||||||||||||||||||||||||||||| ||||||||| | | ||||||
Sbjct 483 CAGTCGCATCATCCCATCTATCTGGCTTCAGAGCCAAGAAAAGTAGTAATGGTCTCAAAG 542
Query 529 ATCATGTGAGGCCAAAATTTTCATTTAACTCACATACTCATGGAGAAGCGTCATCCAAGA 588
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 543 ATCATGGGAGGCCAAAATTTTCATTTAACTCACATACTCATGGAGAAACGTCATCCAAGA 602
Query 589 TAAGTGACATGGCTGAAATCTTTGAGCCTGATGCGGAGGATCAGGCCATAGAAGAGGATC 648
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 603 TAAGTGACATGGCTGAAATCTTTGAGCCTGATGTGGAGGATCAGGCTATAGAAGAGGATC 662
Query 649 CGATTGTTGAATGCCCCAACAGTTTTGATGAAAGATCAGAAAACAGGCAGGGTGTTTCTG 708
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 CAATTATTGAATGCCCCAACAGTTTTGATGAAAGATCAGAAAACAGGCAGGGTGTTTCTG 722
Query 709 TTGCTGAGTCGAGAGAGGTTCTGCACGGGTGCACTGAAGATGCGATACCCAAGCTTCTAG 768
|||||||||||||||| ||| |||||| ||||||| |||||||| |||||||||||| ||
Sbjct 723 TTGCTGAGTCGAGAGAAGTTTTGCACGAGTGCACTAAAGATGCGGTACCCAAGCTTCAAG 782
Query 769 AAATTCCTCCAGATAAGATTAGACTGATAAAAAGAAGCTCTAAACTGTACAGCAGACATG 828
||||||||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 783 AAATTCCTCTAGATAAAATTAGACTGATAAAAAGAAGCTCTGAACTGGACAGCAGACATG 842
Query 829 AAGCAAAAAGTCGAAAATTTGCTCATAAGGGAAATTCATCTAACTTCCAAGATAGTGATA 888
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 843 AAGCAAAAAGTCGGAAATTTACTCATAAGGGAAATTCATCTAACTTCCAAGATAGTGATA 902
Query 889 CTGATGATGAACTTCCTGGACCTATGGATAGTGGATCATCAAGCGATGATGAGCCTAGTT 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 CTGATGATGAACTTCCTGGACCTATGGATAGTGGATCATCAAGCGATGATGAGCCTAGTT 962
Query 949 ATCGAAGCTCAGTGCCAAACATTTCTAACCAGAAGAAACAATTTGTTGGAGACCGGTTTG 1008
||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 963 ATCAAAGCTCAGTGCCAAACATTTCCAACCAGAAGAAACAATTTGTTGGGGACCGGTTTG 1022
Query 1009 ATGAAGCGATAAAAGCTTCCTCTTTGAGCAAGGAAGGTCTCTTGTTCGGTTCACCTAAAT 1068
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1023 ATGAAGCAATAAAAGCTTCCTCTTTGAGCAAAGAAGGTCTCTTGTTCGGTTCACCTAAAT 1082
Query 1069 TATCTGGTGGCTCTAGCCTGTATGGCAAGCTACAACAGATCATGAAACAAGAAAAAGAGA 1128
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1083 TATCTGGTGGCTCTAGCCTGTATGGCAAGCTGCAACAGATCATGAAACAAGAAAAAGAGA 1142
Query 1129 CAGAAATGGAAATCACGAGGAAATTGCAAGGCGGAATCGAACAAGCAGATACATCGAGCT 1188
| ||||||||||||| ||||||||||||| ||||||||| | |||||||| ||||| |||
Sbjct 1143 CGGAAATGGAAATCATGAGGAAATTGCAAAGCGGAATCGGAGAAGCAGATTCATCGGGCT 1202
Query 1189 ATGTTGACGTAGAAA-TCATATCAAGACACTTGGAGGGAAAGCTGGTTGTCTGCAAATGC 1247
||||||| || ||| |||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 1203 ATGTTGATGTT-AAAGTCATGTCAAGACACTTGGAGGGAAAGCTTGTCGTCTGCAAATGC 1261
Query 1248 TCCATCATTGACCTTTCTGGGGACTCCCTATTACTCAAGAACACACAAGCTCTTGCGGCC 1307
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 TCTGTCATTGACCTCTCTGGGGACTCCCTATTACTCAAGAACACACAAGCTCTTGCGGCA 1321
Query 1308 AAAGAAACAGAAACAACAATTATTTTTAGTCCTAAAGTTTGTGCGGATGTTGATATCGAA 1367
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1322 AAAGAAACAGAAACAACAATTATTTTTAGTCCGAAAGTTTGTGCGGATGTTGATATCGAA 1381
Query 1368 ATAGGGAACTTTATCCGAGTATATGCACCATGGAAGGAGTTGGAAGTGAAGAAAACCAAT 1427
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1382 ATAGGGAACTTTATCCGAGTATATGCGCCATGGAAGGAGTTGGAAGTGCAGAAAACCAAT 1441
Query 1428 GATGTGATTATTTTGTCTTCATATTTCTCAAGTTTGTAATGTAACTCACACaaa----aa 1483
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1442 GATGTGATTATTTTGTCTTCATATTTCTCAAGTTTGTAATATAACTCACACAAATGTCAA 1501
Query 1484 -a-----aa----CTTGCAACTGATTTTATCTCTGCT-TATAAAAACGATAATTAAAGCT 1532
| || ||||||| |||||||||| || | ||||||||||||||||||||||
Sbjct 1502 GATGTGGAAAAAACTTGCAAATGATTTTATCAGTG-TGTATAAAAACGATAATTAAAGCT 1560
Query 1533 CTCTGATTGATAACAA 1548
||||||||||||||||
Sbjct 1561 CTCTGATTGATAACAA 1576
> AT1G02965.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G02960.3);
Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:671661-672814
REVERSE LENGTH=489
Length=489
Score = 292 bits (158), Expect = 5e-78
Identities = 245/283 (87%), Gaps = 22/283 (8%)
Strand=Plus/Plus
Query 4 GACGGTACAAAGGCGAACACCGGCGAGATCGATTTGAACGGTGACGGCTAATGTGGCGGC 63
||||||| ||||| | || ||||||||||||||||||||||||||||| |||||| ||||
Sbjct 91 GACGGTATAAAGGTGCACGCCGGCGAGATCGATTTGAACGGTGACGGCGAATGTGACGGC 150
Query 64 GAAGTAA-CTTACCGGTGAATCCAGATTCCGATCAGAGCATATCT----GAGGAAGAG-- 116
|||| || ||| |||| |||||||||||||||||||||||| ||| |||||||||
Sbjct 151 GAAGAAACCTT-CCGGGGAATCCAGATTCCGATCAGAGCATCTCTGGAGGAGGAAGAGAT 209
Query 117 -------G--AG---GAGGAGCAAAATGATCTGTGGCCAAGCGAGAATGCAAAGGAAGAA 164
| || | |||| |||||||| |||||||||||||||||||||||||||||
Sbjct 210 CATCAATGTTAGTTTG-GGAG-AAAATGATATGTGGCCAAGCGAGAATGCAAAGGAAGAA 267
Query 165 GAGGGAGGATTACTACTTCAAACAAAGCTCGAAAAACTCATAGGTTGTGGTGAACTAAAT 224
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 268 GAGGGAGGATTAATACTTCAAACAAAGCTCGAAAAACTCATAGGTTGTGGTGCGCTAAAT 327
Query 225 TATGCTAGGGATCCCGGTGATGTAACTCTGGAAGCAACTCTAC 267
|||||||||||||||||||||||||| ||||||||||| |||
Sbjct 328 TATGCTAGGGATCCCGGTGATGTAACGGTGGAAGCAACTATAC 370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76405229490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5