BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470280
Length=1109
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03030.1 | Symbols: | P-loop containing nucleoside triphosp... 1552 0.0
> AT1G03030.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:701478-703864 FORWARD
LENGTH=1345
Length=1345
Score = 1552 bits (840), Expect = 0.0
Identities = 929/973 (95%), Gaps = 1/973 (0%)
Strand=Plus/Plus
Query 9 ATCTGTACATCCATCAATGGAGGTTTCTTCTTTCTCCACTGTACCCAGATACTGTAACTC 68
|||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 ATCTGTGCGTTCATCAATGGAGGTTTCTTCTTTCTCCACTGTACCCAGATACTGTAACTC 187
Query 69 ACGCTCCTTTGTTGCAGAATTGTCTCGTTTCAGAGGATTCAACGTTCACTTATGGGACCA 128
||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 188 ACGCTCCTTTGTTCCAGAATTGTCTCGTTTCAGGGGATTCAAAGTTCACTTATGGGACCA 247
Query 129 ATCTCTTGTTCCTCTTCATTTGAGCTTTCGAAAAAGAAAGACCACCCCTCGTTTTTTGAT 188
||||||||||||||||||||| ||| |||||||| |||||| ||||||||||| ||||||
Sbjct 248 ATCTCTTGTTCCTCTTCATTTCAGCATTCGAAAACGAAAGAACACCCCTCGTTATTTGAT 307
Query 189 TTCTTGCAGTCAGAAGAAAGATGTCACTGTTGTTGATGCAAGTTGTATGGATGAGATATA 248
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 308 TTCTTGCAGTCAGAAGAAAGATGTCACTGTTGTTGATGGAAGTTGTATGGATGAGATCTA 367
Query 249 TGATAAGTTGGCGGAACGTCTTGTCCCCACTGCAGCAGCAATGTTTAGCCCCAATCTTAA 308
||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 368 TGATAAGTTGGCGGAACGTCTTGTCCCTACAGCAGCGGCAATGTTTAGCCCCAATCTTAA 427
Query 309 ACGTTTGGTCGGTTTGGCTGGTCCTCCTGGTGCCGGAAAAAGCACATTAGCAAATGAAGT 368
|||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 428 ACGTTTGGTCGGTTTGGCTGGTCCTCCTGGTGCCGGGAAAAGTACAGTAGCAAATGAAGT 487
Query 369 TGTGCGTCGTGTAAATAAGCTATGGCCTCAGAAAGCTTCTTCTTTTGATGCTGAGGTTAA 428
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 488 TGTGCGTCGTGTAAATAAGCTATGGCCTCAGAAAGCTGCTTCTTTTGATGCTGAGGTTAA 547
Query 429 GCCGCCGGATGTTGCTATAGTACTTCCCATGGATGGGTTCCATTTGTATCGTTCGCAACT 488
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 548 TCCACCGGATGTTGCTATAGTACTTCCCATGGATGGTTTCCATTTGTATCGTTCGCAACT 607
Query 489 CGATGCTATGGAGGATCCCAAAGAAGCCCATGCCAGAAGAGGGGCTCCTTGGACTTTTGA 548
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 608 CGATGCTATGGAGGATCCCAAAGAAGCCCATGCGAGAAGAGGGGCTCCGTGGACTTTTGA 667
Query 549 TCCTGCGCTACTACTTAACTGTTTAAAGAAGCTGAAAAACGAGGGCTCAGTTTATGTGCC 608
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 TCCTGCACTACTGCTTAACTGTTTAAAGAAGCTGAAAAACGAGGGCTCAGTTTATGTGCC 727
Query 609 ATCATTCGATCATGGAGTTGGGGATCCAGTTGAAGATGATATCTTTGTTAGCCTCCAGCA 668
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 ATCATTTGATCATGGAGTTGGGGATCCAGTTGAAGATGATATCTTTGTTAGCCTCCAGCA 787
Query 669 TAAAGTGGTAATTGTAGAAGGAAACTACATCTTGTTAGAAGAAGGGTCTTGGAAAGACAT 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 TAAAGTGGTAATTGTAGAAGGAAACTACATCTTGTTAGAAGAAGGGTCTTGGAAAGACAT 847
Query 729 CTCAGATATGTTTGATGAGAAATGGTTCATCGATGTGAATCTCGATACAGCAATGCAACG 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 CTCAGATATGTTTGATGAGAAATGGTTCATCGATGTGAATCTCGATACAGCAATGCAACG 907
Query 789 TGTTGAAAACCGGCATATCTCAACTGGTAAACCACCGGATGTTGCTAAATGGCGGGTGGA 848
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 908 TGTTGAAAACCGGCATATCTCAACTGGTAAACCCCCAGATGTTGCTAAATGGCGGGTGGA 967
Query 849 TTATAACGATCGACCAAACGCTGAGCTGATAATAAAGTCAAAGACAAACGCTGATTTACT 908
|||||| || ||||| ||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 968 TTATAATGACCGACCCAACGCAGAGCTGATAATAAAGTCAAAGACAAACGCTGATCTACT 1027
Query 909 GATCAGATCTATCAACATTTGAATCTACTTTCTTGGGGGCTATTGCATAAAAACAGAGTA 968
|||||||||||| ||||||||||||||||||| ||||||||||| | ||| |||| ||
Sbjct 1028 GATCAGATCTATGAACATTTGAATCTACTTTCAAGGGGGCTATTGGACGAAA-CAGAATA 1086
Query 969 AGATGGATAACAA 981
||||| |||||||
Sbjct 1087 AGATGAATAACAA 1099
Score = 134 bits (72), Expect = 2e-30
Identities = 94/104 (90%), Gaps = 3/104 (3%)
Strand=Plus/Plus
Query 978 ACAATGTCTTTTCCTTGTAATGGAAACTTCCAGTAAGCAATTTTGTTTGCAGTAAACTGT 1037
|||||||||||| |||| || ||||||||||| ||||||| |||||| ||||||||||||
Sbjct 1140 ACAATGTCTTTTTCTTGCAACGGAAACTTCCAATAAGCAA-TTTGTTCGCAGTAAACTGT 1198
Query 1038 GTATGCTAATTG-CCTCTGCATACTCACGGATTTTGTTCAGACA 1080
||||||| | || ||||||||||||||||||||||||||||||
Sbjct 1199 GTATGCT-AGTGTTCTCTGCATACTCACGGATTTTGTTCAGACA 1241
Score = 56.5 bits (30), Expect = 5e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1080 ATCAGTCCAGCTCCCAACTATATCATTTTG 1109
||||||||||||||||||||||||||||||
Sbjct 1316 ATCAGTCCAGCTCCCAACTATATCATTTTG 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54367190235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5