BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470281
Length=1369
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03040.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1808 0.0
AT4G02590.1 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DN... 667 0.0
> AT1G03040.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:703906-706631 REVERSE LENGTH=1456
Length=1456
Score = 1808 bits (979), Expect = 0.0
Identities = 1283/1414 (91%), Gaps = 84/1414 (6%)
Strand=Plus/Plus
Query 1 GTCTCTGTCTCTTCGTCCTCATTAGCTTAAGCATCATCATTCTCCTTCACCTAATACAAC 60
|||| |||||||||||||||||||||||||||||||||||||| | |||||| | |||||
Sbjct 1 GTCTGTGTCTCTTCGTCCTCATTAGCTTAAGCATCATCATTCT-C-TCACCT-A-ACAAC 56
Query 61 TCCACAAAAGA---TTCGCATGGAAACTTGTTCTTCGAC-T-TC-TCTATAACTCGCTAC 114
|||||| |||| |||||||||||| |||||||||||| | || ||| ||||||||||
Sbjct 57 TCCACACAAGATTCTTCGCATGGAAAGTTGTTCTTCGACTTCTCTTCTCTAACTCGCTAT 116
Query 115 CTTTAAACTCACCCAACTCTACTGAGTCGAAAATTTCAAACCTTTACTCGTTT-C--CAT 171
|||| |||||||||| ||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 117 CTTTTAACTCACCCAGCTCCACTGAGTCGAAAATTTCAAACCTTTACTCGTTTCCTTCAT 176
Query 172 GGCTAATAACAACAACAACCCACATGATAGCATCTCCGATCCATCTCCTACCGACGATTT 231
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GGCTAATAACAACAACATCCCACATGATAGCATCTCCGATCCATCTCCTACCGACGATTT 236
Query 232 CTTTGAGCAGATCCTCGGGCTTTCCAACTTCTCTGCG-TCTTCTGGTTCTGGTCTTTCTG 290
||| ||||||||||||||||||||||||||||| | | ||||| ||||||||||| ||||
Sbjct 237 CTTCGAGCAGATCCTCGGGCTTTCCAACTTCTCCG-GTTCTTCAGGTTCTGGTCTCTCTG 295
Query 291 GAATTGGCGGAGGATTAAGCGGCGTGGGTCCACCTCCGATGATGCTTCAGCTTGGTTCAG 350
||| | | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GAA-T--C----G-----GCGGCGTGGGTCCACCTCCGATGATGCTTCAGCTTGGTTCAG 343
Query 351 GCGACGAAGGGAATCATAATCATATGGGTGCCATTGGAGGAGGTGGACCTGTAGGGTTTC 410
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 GCAACGAAGGGAATCATAATCATATGGGTGCCATTGGAGGAGGTGGACCTGTAGGGTTTC 403
Query 411 ATAATCAGATGTTTCCGTTGGGATTAAGTCTTGATCAAGGGAAAGGACATGGCTTTCTTA 470
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 404 ATAATCAGATGTTTCCGTTGGGATTAAGTCTCGATCAAGGGAAAGGACATGGCTTTCTTA 463
Query 471 AACCTGATGGTATTCATGGAACTGGTAAACGTTTCCAAGATGATGTTCTTGATAATC--- 527
|||||||| | | ||||||||||||||||||||| ||||||||||||||||
Sbjct 464 AACCTGAT-G-----A---AACTGGTAAACGTTTCCAAGACGATGTTCTTGATAATCGAT 514
Query 528 G------TATGAAACCTGTTTTCCATGGGCAGCCAATGTCACAGCCAGCTCCACCAATGC 581
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 GTTCCTCTATGAAACCTATTTTCCATGGGCAGCCAATGTCACAGCCAGCTCCACCAATGC 574
Query 582 CGCATCAACAGTCTACAATTCGACCTAGAGTTAGGGCTAGGCGAGGTCAAGCCACTGATC 641
|||||||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 575 CGCATCAACAGTCTACTATTCGGCCTAGAGTTAGGGCTAGGCGAGGTCAAGCTACCGATC 634
Query 642 CACATAGCATCGCTGAGAGGCTCCGTAGAGAAAGAATAGCAGAACGGATCAGGGCGTTGC 701
||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||
Sbjct 635 CACATAGCATCGCTGAGAGGCTCCGAAGGGAAAGAATAGCAGAACGGATCAGGTCGTTGC 694
Query 702 AGGAACTTGTACCTACCGTTAACAAGACAGATAGGGCTGCTATGATCGATGAGATTGTGG 761
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 695 AGGAACTTGTACCTACCGTTAACAAGACAGATAGGGCTGCTATGATCGACGAGATTGTCG 754
Query 762 ATTATGTTAAGTTTCTCAGGCTCCAAGTTAAGGTCTTGAGCATGAGCCGTCTTGGTGGAG 821
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 755 ATTATGTAAAGTTTCTCAGGCTCCAAGTTAAGGTCCTGAGCATGAGCCGTCTTGGTGGAG 814
Query 822 CCGGTGCTGTCGCACCACTAGTCACTGAAATGCCATTGTCATCATCAACTGAGGATGAAA 881
||||||||||||||||||||||||||||||||||||| || |||||| ||||||||| |
Sbjct 815 CCGGTGCTGTCGCACCACTAGTCACTGAAATGCCATTATCTTCATCAGTTGAGGATGAGA 874
Query 882 CGCAGGCCGTGTGGGAGAAATGGTCAAACGATGGGACAGAGCGGCAAGTGGCTAAGCTGA 941
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 875 CGCAGGCCGTGTGGGAGAAATGGTCAAACGATGGGACAGAGAGGCAAGTGGCTAAGCTGA 934
Query 942 TGGAAGAAAACGTTGGAGCAGCGATGCAGCTTTTGCAATCAAAGGCTCTTTGCATAATGC 1001
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 935 TGGAAGAAAACGTTGGAGCAGCGATGCAACTTTTGCAATCAAAGGCTCTTTGCATAATGC 994
Query 1002 CGATCTCATTGGCAATGGCGATTTACCATTCTCAGCCACCAGACACATCTTCTTCAATCG 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 CGATCTCATTGGCAATGGCGATTTACCATTCTCAGCCACCAGACACATCTTCTTCAATCG 1054
Query 1062 TCAAACCAGAGATGAATCCTCCACCCTAGATTCTATTTTATCGACAGCATCCAACGGTCC 1121
||||||||||||||||||||||||| |||||| | || | || | |||||||||||
Sbjct 1055 TCAAACCAGAGATGAATCCTCCACCGTAGATT-T-TTGT-TC-A-----TCCAACGGTCC 1105
Query 1122 ACAGCTGAAGATTGACATTTTGCTCTGTTTCCCACTACTAGACTTTTGTGACTGATGAAA 1181
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1106 CCAGCTGATGATTGACATTTTGCTCTGTTTCCCACTACTAGACTTTTGTGACTCATGAAA 1165
Query 1182 GGTAAGTAAAAAGGCATTGGAGATGGAATCTAAGTAGGATTTGTGCAGTAAA-AGGAAAA 1240
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 1166 GGTAAGTAAAAAGGCATTGGAGATGGAATCTAAGTAGGATTTGTGCAGTAAAGAAGTAAA 1225
Query 1241 A-GC--TCT--C----G----------CT-T-GCTTG---G-CTAATATTTTATCATTTT 1275
| | ||| | | || | ||||| | ||| ||||| ||||||||
Sbjct 1226 ACGGGATCTGTCAAAAGAAGGAAAAAGCTCTCGCTTGCTTGGCTAGTATTT-ATCATTTT 1284
Query 1276 GACGAAAGTAACTCTTTTTGGTTCAAAGACTTTAGTGTGATTTTCAGGACGAAGGGCTTT 1335
|| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1285 GATGAAAGTAACTCTTTTTTGTTCAAAGACTTTAGTGTGATTTTCAGGACCAAGGGCTTT 1344
Query 1336 GAGGGTAGTAAAGCTAGCTGTAGTAATAGTAATG 1369
||||||||| ||||||||||||||||||||||
Sbjct 1345 GAGGGTAGT---GCTAGCTGTAGTAATAGTAATG 1375
> AT4G02590.1 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:1137498-1140491 REVERSE
LENGTH=1588
Length=1588
Score = 667 bits (361), Expect = 0.0
Identities = 763/946 (81%), Gaps = 72/946 (8%)
Strand=Plus/Plus
Query 185 AACAACCCACATGATAGCATCTCCGATCC-ATCTCCTACCGACGATTTCTTTGAGCAGAT 243
|||||||| || || | | | || || || | ||||| | || |||||||| ||||| ||
Sbjct 195 AACAACCCTCACGACAACCTTTCTGA-CCAAACTCCTTCTGATGATTTCTTCGAGCAAAT 253
Query 244 CCTCGGGCTTTCC-AACTTCTCTGCGTCTTCTGGTTCTGGTCTT-TCTGGAATTGGCGGA 301
|||| ||| |||| |||||||| || ||||||| | ||| || |||||| ||| ||||
Sbjct 254 CCTC-GGCCTTCCTAACTTCTCAGCCTCTTCTGCCGCCGGT-TTATCTGGAGTTGACGGA 311
Query 302 GGATTAAGCG-GCGTGGGTCCACCTCCGATGATGCTTCAGCTT-GGTTCAGGCGACGAAG 359
||||| || | | || || |||| || |||||||| ||| || ||||| | || |||
Sbjct 312 GGATT-AG-GTG-GT-GGAGCACCGCCTATGATGCTGCAG-TTGGGTTC-CG-GA-GAA- 362
Query 360 GGAATCATAATCATATGGGTGCCATT-GGAGGAGGTGGACC-TGTAGGGTTTCATAATCA 417
||| | | ||| ||||||| | || |||||| ||||||| | |||||||| |||||
Sbjct 363 -GAAGGA-AGTCACATGGGTGGC-TTAGGAGGAAGTGGACCAACT-GGGTTTCACAATCA 418
Query 418 GATGTTTCCGTTGGGATTAAGTCTTGATCAAGGGAAAGGACATGGCTTTCTTAAACCTGA 477
||||||||| ||||| ||||||||||||||||||||||||| ||| ||||||| ||||||
Sbjct 419 GATGTTTCCTTTGGGGTTAAGTCTTGATCAAGGGAAAGGACCTGGGTTTCTTAGACCTGA 478
Query 478 TGGTA-TTCATGGAACTGGTAAACGTTTC-CAAGATGATGTTCTTGATAATC---G---- 528
|| | ||||||| ||| ||| | ||| | |||||||||| ||||||||| |
Sbjct 479 AGG-AGGACATGGAAGTGGGAAAAGATTCTC-AGATGATGTTGTTGATAATCGATGTTCT 536
Query 529 --TATGAAACCTGTTTTCCATGGGCAGCCAATGTC-ACAGCCAGCTCCACCAATGCCGCA 585
|||||||||||||||||| |||||||| ||| | ||||||| ||||| | ||| ||
Sbjct 537 TCTATGAAACCTGTTTTCCACGGGCAGCCTATG-CAACAGCCACCTCCATC--GGCCCCA 593
Query 586 TCAACAG--T-CTACAATTCGACCTAGAGTTAGGGCTAGGCGAGGTCAAGCCACTGATCC 642
|| ||| | || |||| || || || ||| | |||||||| ||||| || ||||||||
Sbjct 594 -CATCAGCCTACTTCAATCCGTCCCAGGGTTCGAGCTAGGCGTGGTCAGGCTACTGATCC 652
Query 643 ACATAGCATCGCTGAGAGGCTCCGTAGAGAAAGAATAGCAGAACGGATCAGGGCGTTGCA 702
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 653 ACATAGCATCGCTGAGCGGCTACGTAGAGAAAGAATAGCAGAACGGATCAGGGCGCTGCA 712
Query 703 GGAACTTGTACCTACCGTTAACAAGACAGATAGGGCTGCTATGATCGATGAGATTGTGGA 762
||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 713 GGAACTTGTACCTACTGTGAACAAGACCGATAGAGCTGCTATGATCGATGAGATTGTCGA 772
Query 763 TTATGTTAAGTTTCTCAGGCTCCAAGTTAAGGTCTTGAGCATGAGCCGTCTTGGTGGAGC 822
|||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 773 TTATGTAAAGTTTCTCAGGCTCCAAGTCAAGGTTTTGAGCATGAGCCGACTTGGTGGAGC 832
Query 823 CGGTGCTGTCGCACCACTAGTCACTGAAATGCCA-TTGTCATCATCAACTGAGGATGAAA 881
|||||| || || ||||| || ||||| ||||| || ||||||||| |||||||||||
Sbjct 833 CGGTGCGGTTGCTCCACTTGTTACTGATATGCCTCTT-TCATCATCAGTTGAGGATGAAA 891
Query 882 CGC---AGG---------C-C-GT-----G--TGGGAGAAATGGTCAAACGATGGGACAG 920
|| ||| | | | | |||||||||||||| ||||||||||| |
Sbjct 892 CGGGTGAGGGTGGAAGGACTCCGCAACCAGCGTGGGAGAAATGGTCTAACGATGGGACTG 951
Query 921 AGCGGCAAGTGGCTAAGCTGATGGAAGAAAACGTTGGAGCAGCGATGCAGCTT-TTGCAA 979
| || ||||||||||| ||||||||||| ||||||||||| |||||||||||| || |||
Sbjct 952 AACGTCAAGTGGCTAAACTGATGGAAGAGAACGTTGGAGCCGCGATGCAGCTTCTT-CAA 1010
Query 980 TCAAAGGCTCTTTGCATAATGCCGATCTCATTGGCAATGGCGATTTACCATTCTCAGCCA 1039
|||||||||||||| || ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 1011 TCAAAGGCTCTTTGTATGATGCCAATCTCATTGGCAATGGCAATTTACCATTCTCAACCT 1070
Query 1040 CCAGACACATCTTCTTCAATCGTCAAACCAGAGATGAATCCTCCAC 1085
|| || |||||||| | | ||||| || |||| ||||||||||
Sbjct 1071 CCGGATACATCTTC---AGTGGTCAAGCCTGAGAACAATCCTCCAC 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67419331935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5