BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470283
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03055.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1397 0.0
> AT1G03055.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G64680.1);
Has 143 Blast hits to 143 proteins in 26 species: Archae -
0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 122; Viruses
- 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr1:710018-711803
REVERSE LENGTH=919
Length=919
Score = 1397 bits (756), Expect = 0.0
Identities = 840/881 (95%), Gaps = 3/881 (0%)
Strand=Plus/Plus
Query 21 ATGAACACTAAGCTATCACTTTCTCAGACCAAGATCCTCACTTTCACAACTCGATTCAAC 80
|||||||||||||||||||||||||||||||| ||| |||||||||||||| | ||||||
Sbjct 41 ATGAACACTAAGCTATCACTTTCTCAGACCAAAATCTTCACTTTCACAACTTGGTTCAAC 100
Query 81 GATACTCGAAGTGGCTTAGATAGACGCTCAAGCATTTCCCCGACTCTCAGCTCCAAGCCT 140
|||||||||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 101 GATACTCGAAGTGGCTTAGATAGACGCTCAAGCATTTCCCCGACTCTCTGTTCAAAGCCC 160
Query 141 GTCTACTCCGGTGAACTCAAGGCTGCAAAAGAGACAGCAAGAATTGAGCCATCGAATACT 200
||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 161 GTCTACTCCGGAAAACTCAAGGCTGCAAAAGAGACAGCAAGAATCGAGACATCGAATACG 220
Query 201 AAGAATGCCAGTATTGAGGACAGCTTTTTCTCGAAAATTGCAATCAATTATTTATCAAAG 260
|||||||| ||||||||||||||||| ||||||||||||||||| |||||| ||||||||
Sbjct 221 AAGAATGCGAGTATTGAGGACAGCTTCTTCTCGAAAATTGCAATTAATTATCTATCAAAG 280
Query 261 AATCTTCAAGATGCAGCAGGGATTAGTAGTAGCAGTAAGAGTACCGATTATGATAGGTTA 320
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 AATCTTCAAGACGCAGCTGGGATTAGTAGTAGCAGTAAGAGTACCGATTATGATAGGTTA 340
Query 321 GTGGACACGGCAACTACGGTTGCGCGTAACTTTGACACCAAGCAACAACATGAGTTTGTT 380
||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 341 GTGGATACGGCAACTAGGGTTTCGCGTAACTTTGACACCAAGCAACAACATGAGTTTGTT 400
Query 381 CTTAGCTCTTTGGACAGAGCGTTACCGACAGTGATAAGCTCCTTGATCAAAATGGCATTT 440
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 401 CTTAGCTCTTTGGACAGAGCATTACCGACAGTAATAAGCTCCTTGATCAAAATGGCATTT 460
Query 441 CCACCTTCAAAACTCTCGAGGGAGCTCTTCGCTCTATTCACGACAATATCTTTCGCTTGG 500
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 CCACCTTCAAAAGTCTCGAGGGAGCTCTTCGCTCTATTCACGACAATATCTTTCGCTTGG 520
Query 501 CTTGTTGGACCTTCAGAGGTGAGGGAGACTGAGGTTAATGGAAGAAAAGAGAAGAGTGTT 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 CTTGTTGGACCTTCAGAGGTGAGGGAGACTGAGGTTAATGGAAGAAAAGAGAAGAGTGTT 580
Query 561 GTGTACATAGAGAAGTGCAGGTTTCTTGAGCAGTCAAATTGTGTTGGTATGTGCACTCAT 620
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 581 GTGTACATAGAGAAGTGCAGGTTTCTTGAACAGTCAAATTGTGTTGGCATGTGCACTCAT 640
Query 621 ATTTGTAAGATTCCATCCCAAATCTTCATCAAAAACTCACTTGGAATGCCTATCTACATG 680
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 641 ATTTGTAAAATTCCATCCCAAATCTTCATCAAAAACTCACTGGGAATGCCTATCTACATG 700
Query 681 GAGCCCGATTTTAATGATCTTAGCTGTAAGATGATGTTTGGTCGGGAGCCTCCAGAGATC 740
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 701 GAGCCCGATTTTAATGATCTTAGCTGTAAAATGATGTTTGGTCGGGAGCCTCCAGAGATC 760
Query 741 GTAGATGATCCTGCTATGAAACAACCATGCTTTGAATTCTGCAAATCAAACAAAAGCTAT 800
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 GAAGATGATCCTGCTATGAAACAACCATGCTTTGAATTCTGCAAATCAAACAAAAGCTAC 820
Query 801 GGTGTGAAGCATTAGAGCTAGTATTAGAGAGATTAGATATAATTGTGATATCAAAACATA 860
|||||||||||||||| |||||| ||||| ||||||||| ||||||||||||||||||||
Sbjct 821 GGTGTGAAGCATTAGAACTAGTACTAGAGCGATTAGATA-AATTGTGATATCAAAACATA 879
Query 861 TATAAGTTTTTCTTTTAAAGGT-ATACCAGATCTTACAATT 900
| |||||||||||||||||| | |||||||| ||||||||
Sbjct 880 TTTAAGTTTTTCTTTTAAAG-TCATACCAGAGATTACAATT 919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43954878625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5