BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470286
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03070.1 | Symbols: | Bax inhibitor-1 family protein | chr1... 1439 0.0
> AT1G03070.1 | Symbols: | Bax inhibitor-1 family protein | chr1:729935-731557
FORWARD LENGTH=1019
Length=1019
Score = 1439 bits (779), Expect = 0.0
Identities = 887/939 (94%), Gaps = 8/939 (1%)
Strand=Plus/Plus
Query 40 AAACAAATTCCGTTACTTAGAATGTATAAGTGGAATCTTCCTTACCGGAAAGATGACGTG 99
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 78 AAACAAATTCCGTT-TTTAGAATGTATAAGTGGAATCTTCCTTACCGAAAAGATGACGTG 136
Query 100 GAGACCGG-TG-GTA-GCGGTGAGAGATCTCTGTATCCGACTATGCTTGAGAGCCCCGAA 156
|||||||| | | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 GAGACCGGCCGTGAAGGCGGTGAGAGATCTCTGTATCCGACTATGCTTGAGAGCCCCGAA 196
Query 157 CTCCGATGGGGTTTCATCCGGAAGGTATATTCCATAATCGCATTCCAGCTCTTAGCAACC 216
|||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct 197 CTCCGATGGGGTTTCATCAGAAAGGTATATTCCATAATCGCATTCCAGCTTTTAGCAACC 256
Query 217 ATCGCCGTCGCCTCCACGGTGGTCTTCGTCCGTCCCATTGCGGTGTTCTTCGCCACCACT 276
||||||||||||||||||||||| || |||||||| || || |||||||||||||| |||
Sbjct 257 ATCGCCGTCGCCTCCACGGTGGTTTTTGTCCGTCCGATCGCCGTGTTCTTCGCCACTACT 316
Query 277 AGTGCCGGTCTTGCTCTCTGGATTGTCTTAATCATCACGCCTCTTATAGTAATGTGTCCT 336
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 AGTGCCGGTCTCGCTCTCTGGATTGTCTTAATCATCACGCCTCTTATAGTAATGTGTCCT 376
Query 337 TTGTACTATTACCACCAGAAACATCCGGTGAATTACCTGCTTTTAGGGATTTTCACGGTG 396
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 377 TTGTACTATTACCACCAGAAACATCCAGTGAATTATTTGCTTCTAGGGATTTTCACGGTA 436
Query 397 GCTTTAGCTTTTGCCGTTGGATTAACATGTGCTTTCACCAGTGGGAAAGTGATTCTTGAG 456
||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 437 GCTTTGGCTTTCGCCGTCGGATTAACATGTGCTTTCACCAGCGGGAAAGTGATTCTTGAG 496
Query 457 GCAGCGATTTTGACAACAGTAGTGGTGCTTTCCTTAACCTTTTACACCTTTTGGGCAGCA 516
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 497 GCAGCGATTTTGACAACAGTAGTGGTGCTTTCCTTAACCGTCTACACCTTTTGGGCAGCA 556
Query 517 AAGAAAGGATATGACTTCAATTTCCTTGGTCCATTCTTGTTTGGTGCTCTCATCGTTCTC 576
||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 557 AAGAAAGGATATGACTTTAACTTCCTCGGTCCATTCTTGTTTGGTGCTCTCATCGTTCTC 616
Query 577 ATGGTCTTTGCCCTTATTCAGATTTTCTTCCCGTTGGGTCGGATCTCAGTGATGATCTAT 636
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 617 ATGGTCTTTGCCCTTATTCAGATTTTCTTCCCGTTGGGACGGATCTCAGTGATGATCTAT 676
Query 637 GGATGTTTGGCTGCGATAATTTTCTGCGGGTACATAGTATACGATACAGACAATCTCATC 696
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 677 GGATGTTTGGCTGCGATAATATTCTGCGGGTACATAGTTTACGATACAGACAATCTCATC 736
Query 697 AAACGTTACAGTTACGATGAGTATATTTGGGCAGCAGTTTCCCTCTACTTAGATATTATC 756
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 737 AAACGTTACAGCTACGATGAGTATATTTGGGCAGCAGTTTCGCTCTACTTAGATATTATC 796
Query 757 AACCTCTTCTTGGCTCTCCTTACCATTTTCAGAGCTGCCGAGTGAAGCTTCTTTACTCCT 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 AACCTCTTCTTGGCTCTCCTTACCATTTTCAGAGCTGCCGAGTGAAGCTTCTTTACTCCT 856
Query 817 TTT--AAGTCTCGATCAGTGT-ATTATCATATCCTTAAAATGTGTAAATCTCTAATATTG 873
||| |||||||||||||||| |||||||| | ||||||||||||||||||||||||||
Sbjct 857 TTTTTAAGTCTCGATCAGTGTTATTATCATGTTTTTAAAATGTGTAAATCTCTAATATTG 916
Query 874 TTTGTTAACAAAACTCATTTTCTTTGTAGTATTCTCATGTACAAAAACATAACCTGGCAA 933
||||||||| ||||| ||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 917 TTTGTTAACGAAACTTATTTTCTCTGTAGTATTCTCATGTACAAAA-CATAACCTGGCAG 975
Query 934 TGTATTTTTTAAAGTAATCGAGTAGTATTGGAACTTGCG 972
||||| ||||||||||||||| |||||||| || |||||
Sbjct 976 TGTATCTTTTAAAGTAATCGAATAGTATTGAAATTTGCG 1014
Score = 75.0 bits (40), Expect = 1e-12
Identities = 47/50 (94%), Gaps = 1/50 (2%)
Strand=Plus/Plus
Query 1 TTTCTCGCATTTTCTCGGGAAAATCGTAAC-AAACAAACAAAACAAATTC 49
|||||||||||||||||||||||||||||| |||||||||||| || |||
Sbjct 18 TTTCTCGCATTTTCTCGGGAAAATCGTAACGAAACAAACAAAATAACTTC 67
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47571737209
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5