BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470289 Length=2560 Score E Sequences producing significant alignments: (Bits) Value AT1G03090.2 | Symbols: MCCA | methylcrotonyl-CoA carboxylase al... 3975 0.0 AT1G03100.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 294 2e-78 > AT1G03090.2 | Symbols: MCCA | methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) | chr1:739679-744184 FORWARD LENGTH=2606 Length=2606 Score = 3975 bits (2152), Expect = 0.0 Identities = 2308/2385 (97%), Gaps = 4/2385 (0%) Strand=Plus/Plus Query 1 CACTCGGAAAATTCGAAAATCGAGATCAAATGTCGATGATGACGGTGTGGGCACTCCGAC 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 8 CACTCGGAAAATTCGAAAATCGAGATCAAATGTCGATGATGACGGTGTGGGCACTTCGAC 67 Query 61 GGAATGTTCGCCGGAAAAATAACTCAATGCTCCTGAGATATATTTCCGACTCCGCATCGA 120 |||||||||| ||||||||| |||| |||||| ||||||||||||||| ||||||||||| Sbjct 68 GGAATGTTCGTCGGAAAAATCACTCGATGCTCGTGAGATATATTTCCGGCTCCGCATCGA 127 Query 121 TTAAGCCTAAGGATCGTTGTATTGAGAAGATTTTGGTGGCGAACAGAGGCGAGATTGCTT 180 | ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 128 TGAAGCCTAAGGAGCAATGTATTGAGAAGATTTTGGTGGCGAACAGAGGCGAGATTGCTT 187 Query 181 GCCGGATCATGAGAACGGCGAAGCGTTTAGGGATTCAGACCGTTGCGGTTTACAGTGACG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 188 GCCGGATCATGAGAACGGCGAAGCGTTTAGGGATTCAGACCGTTGCGGTTTACAGTGACG 247 Query 241 CTGATAAAGATTCGCTCCACGTGAAATCTGCAGACGAAGCGGTTCGGATTGGCCCGCCCT 300 |||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 248 CTGATAGAGATTCGCTCCATGTGAAATCTGCAGACGAAGCGGTACGGATTGGCCCGCCCT 307 Query 301 CGGCTAGGCTCAGTTACCTCAGCGGTGCGACTATCATGGAGGCAGCGTCTCGGACTGGTG 360 ||||||| || |||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 308 CGGCTAGACTTAGTTACCTCAGCGGTGTGACTATCATGGAGGCAGCGGCTCGGACTGGTG 367 Query 361 CACAGGCAATACATCCTGGCTATGGTTTTTTGTCAGAAAGTTCTGACTTTGCCCAACTCT 420 ||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 368 CACAGGCAATACACCCTGGCTATGGGTTCTTGTCAGAAAGTTCTGACTTTGCCCAACTCT 427 Query 421 GTGAAGATTCGGGTCTAACATTCATTGGACCTCCAGCATCTGCAATTAGAGACATGGGTG 480 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 428 GTGAGGATTCGGGTCTAACATTCATTGGACCTCCAGCATCTGCTATTAGAGACATGGGTG 487 Query 481 ATAAAAGTGCATCCAAGAGAATAATGGGAGCTGCTGGAGTTCCTCTCGTGCCTGGATATC 540 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 488 ATAAAAGTGCATCCAAGAGAATTATGGGAGCTGCTGGAGTTCCTCTCGTGCCTGGATATC 547 Query 541 ATGGCCATGAGCAAGATATTGATCATATGAAGTCAGAAGCCGAAAATATTGGATACCCTA 600 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 548 ATGGCCATGAGCAAGATATTGATCATATGAAGTCAGAAGCTGAAAAGATTGGATACCCTA 607 Query 601 TAATAATCAAACCAACACATGGAGGTGGGGGGAAGGGAATGAGGATAGTGCAAAGTGAGA 660 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 608 TAATAATCAAGCCAACACATGGAGGTGGGGGGAAGGGAATGAGGATAGTGCAAAGTGGGA 667 Query 661 AGGATTTTGCTGACTCGTTTTTAGGG-GCTCAACGTGAAGCTGCTGCTTCTTTTGGCGTT 719 |||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||| Sbjct 668 AGGATTTTGCTGACTCGTTTTT-GGGTGCCCAACGTGAAGCTGCTGCTTCTTTTGGCGTT 726 Query 720 AACACTATTCTTCTCGAGAAATACATCACTCGACCGAGGCATATCGAAGTCCAGATATTT 779 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 727 AACACTATTCTTCTCGAGAAATACATTACTCGACCGAGGCATATAGAAGTCCAGATATTT 786 Query 780 GGTGACAAACATGGAAATGTTCTTCATCTATACGAAAGGGATTGCAGTGTGCAAAGAAGA 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 787 GGTGACAAACATGGAAATGTTCTTCATCTATACGAAAGGGATTGCAGTGTGCAAAGAAGA 846 Query 840 CACCAAAAGATTATCGAAGAAGCTCCTGCGCCTAATATATCTGAAAAGTTCCGCGCAAAC 899 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 847 CACCAAAAGATTATTGAAGAAGCTCCTGCGCCTAATATATCTGAAAAGTTCCGCGCAAAC 906 Query 900 TTAGGCCAAGCTGCTGTCTCTGCCGCACGGGCAGTTGGATATTACAATGCTGGGACGGTG 959 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 907 TTAGGCCAAGCTGCTGTCTCTGCGGCACGGGCAGTTGGATATTATAATGCTGGGACGGTG 966 Query 960 GAATTTATAGTTGACACTGAGTCTGATCAATTTTATTTTATGGAAATGAACACCCGTCTA 1019 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 967 GAATTTATAGTTGACACCGAGTCTGATCAATTTTATTTTATGGAAATGAACACCCGTCTA 1026 Query 1020 CAGGTCGAACATCCTGTAACCGAGATGATTGTTGGTCAAGATCTTGTAGAATGGCAAATT 1079 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 1027 CAGGTCGAACATCCTGTAACTGAGATGATTGTTGGTCAAGATCTTGTGGAATGGCAAATT 1086 Query 1080 CGGGTTGCCAATGGGGAACCTCTCCCCATAAGCCAATCCGAGGTGCCAATGTCAGGTCAT 1139 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1087 CGGGTTGCCAATGGGGAACCTCTCCCCTTAAGCCAATCCGAGGTGCCAATGTCAGGTCAT 1146 Query 1140 GCCTTTGAGGCCAGGATATATGCTGAAAATGTTCCAAAAGGATTTCTTCCTGCAACTGGG 1199 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1147 GCCTTTGAGGCCAGGATATATGCTGAAAACGTTCCAAAAGGATTTCTTCCTGCAACTGGG 1206 Query 1200 GTCCTCAATCATTATCGCCCTGTTGCTGTCTCACCATCAGTTCGGGTTGAAACTGGAGTT 1259 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1207 GTCCTCAATCATTATCGCCCTGTTGCAGTCTCACCATCAGTTCGGGTTGAAACTGGAGTT 1266 Query 1260 GAACAAGGAGACACAGTTAGCATGCACTATGATCCTATGATTGCAAAGCTTGTTGTCTGG 1319 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1267 GAGCAAGGAGACACTGTTAGCATGCACTATGATCCTATGATTGCAAAGCTTGTTGTCTGG 1326 Query 1320 GGAGGTAATCGTGGCGAAGCTTTAGTGAAACTGAAGGATTGCTTGTCTAACTTTCAGGTA 1379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1327 GGAGGTAATCGTGGCGAAGCTTTAGTGAAACTGAAGGATTGCTTGTCTAACTTTCAGGTA 1386 Query 1380 GCAGGTGTACCTACAAACATAAATTTCCTTCAAAAACTTGCTAGTCATAAGGAGTTTGCA 1439 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1387 GCAGGTGTACCTACGAACATAAATTTCCTTCAAAAACTTGCTAGTCATAAGGAGTTTGCA 1446 Query 1440 GTGGGCAATGTAGAAACTCATTTTATTGAGCACCATAAAAGTGATCTATTTGCTGACGAA 1499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1447 GTGGGCAATGTAGAAACTCATTTTATTGAGCACCATAAAAGTGATCTATTTGCTGACGAA 1506 Query 1500 AGCAATCCAGCTGCAACAGAAGTGGCATACAAGGCAGTCAAGCATAGTGCAGCATTGGTG 1559 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1507 AGCAATCCAGCTGCAACAGAAGTGGCATACAAGGCAGTCAAGCATAGTGCAGCATTGGTG 1566 Query 1560 GCTGCTTGTATCTCCACAATCGAGCATTCTGCTTGGAATGAAAGTAGTCATGGGAAACTT 1619 |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| || Sbjct 1567 GCTGCTTGTATCTCCACAATCGAGCATTCTACTTGGAATGAAAGTAATCATGGGAAAGTT 1626 Query 1620 CCATCGATATGGTATTCTCATCCTCCTTTTAGGGTCCATCATGAAGCCAAACAAACCATT 1679 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1627 CCATCGATATGGTATTCGAATCCTCCTTTTAGGGTCCATCATGAAGCCAAACAAACCATT 1686 Query 1680 GAGGTAGAGTGGAATAATGAATGCGAGGGAGCTGGCTCTAACCTTATATCACTCGGTGTA 1739 ||| |||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1687 GAGCTAGAATGGAATAATGAATGCGAGGGAACTGGCTCTAACCTCATATCACTCGGTGTA 1746 Query 1740 ATATATCAACCAGATGGAAGCTATCTCATTCAGGAAGGCAATGATTCTCCAAGTTTAGAA 1799 | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1747 AGATATCAACCAGATGGAAGCTATCTCATTGAGGAAGGCAATGATTCTCCAAGTTTAGAA 1806 Query 1800 GTCAGAGTAACTCGAGAAGGAAATTGCGATTTTAGAGTTGAAGCGGCTGGATTGAGCATG 1859 |||||||||| |||| |||||| ||||||||||||||||||||||| |||||||||||| Sbjct 1807 CTCAGAGTAACACGAGCAGGAAAGTGCGATTTTAGAGTTGAAGCGGCCGGATTGAGCATG 1866 Query 1860 AATGTTAGTCTAGCCACGTACTTGAAGGATGGTTATAAGCATATCCATATATGGCATGGT 1919 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1867 AATGTTAGTCTAGCTGCGTACTTGAAGGATGGTTATAAGCATATCCATATATGGCATGGT 1926 Query 1920 TCAGAACACCATCAGTTCAAGCAGAAGGTAGGAATCGAATTCTCTGAAGATGAAGAAGGT 1979 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1927 TCAGAACACCATCAGTTCAAGCAGAAGGTAGGAATCGAATTCTCTGAAGATGAAGAAGGT 1986 Query 1980 GTCCAACACAGAACCAGCTCCGAAACATCATCACACCCTCCAGGAACCATTGTGGCCCCC 2039 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1987 GTCCAACACAGAACCAGCTCCGAAACATCATCACACCCTCCAGGAACCATTGTGGCCCCC 2046 Query 2040 ATGGCTGGTTTGGTAGTCAAGGTCCTTGTTGAAAACGAAGCCAAAGTAGATCAAGGTCAA 2099 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2047 ATGGCTGGTTTGGTAGTCAAGGTCCTTGTCGAAAACGAAGCCAAAGTAGATCAAGGTCAA 2106 Query 2100 CCTGTATTAGTCCTAGAGGCAATGAAGATGGAGCACGTTGTGAAAGCACCATCCTCTGGA 2159 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2107 CCTATATTAGTCCTAGAGGCAATGAAGATGGAGCACGTTGTGAAAGCACCATCCTCTGGA 2166 Query 2160 AGCATACAGGACCTCAAAGTTAAAGCAGGCCAACAGGTTTCAGATGGCAGTGCTCTATTC 2219 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2167 AGCATACAGGACCTCAAAGTTAAAGCAGGCCAACAGGTTTCAGATGGCAGTGCTCTATTC 2226 Query 2220 AGAATCAAAGGATAAATAACACGATTTGCGATTGATCAAACCCATGCTCTGGCTTACCCG 2279 || |||||||| ||||||||||||||||||||||||||| || || | ||||||||| || Sbjct 2227 AGGATCAAAGGGTAAATAACACGATTTGCGATTGATCAA-CC-ATTCGCTGGCTTACGCG 2284 Query 2280 AAACCTCAACTAATACGCATTTGGGTGTGTATATAAACAGAAATCTTACAAAAGATAAAT 2339 |||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2285 AAACCTGAACTAATAAGCATTTGGGTGTGTATATAAACCGAAATCTTACAAAAGATAAAT 2344 Query 2340 AAATCCAAAGCTTTATCAATGTTTGTGCTGCCTCTATATAGATCT 2384 |||||||||||||||| ||||||| | |||||||||||||||||| Sbjct 2345 AAATCCAAAGCTTTATAAATGTTTTTACTGCCTCTATATAGATCT 2389 Score = 294 bits (159), Expect = 2e-78 Identities = 169/174 (97%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 2387 TGATTACATTAATAATCAAGTTAGTCCGAGCCATTTCTTGAATACTAAACCCGCTTCTCT 2446 |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 2433 TGATTACATTAATAATCAAGATAGTCCGAGCCATTTCTTGAATACTAAACCAGCTTCTCT 2492 Query 2447 CTTCTTGAGCTGAGACTCACTTTGAACTTTTGGAGCTTTGCCTTTATAAGCAGTCTTGTG 2506 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 2493 CTTCTTGAGCTGAGACTCGCTCTGAACTTTTGGAGCTTTGCCTTTATAAGCAGTCTTGTG 2552 Query 2507 ATACTTCAAGAAGAGCATCCGATACTTGTACTTATCAACAAACATATTCTTTTT 2560 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2553 ATACTTCAAGAAGAGCATCCGATACTTGTACTTATCAACAAACATATTTTTTTT 2606 > AT1G03100.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:743885-746479 REVERSE LENGTH=2595 Length=2595 Score = 294 bits (159), Expect = 2e-78 Identities = 169/174 (97%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 2387 TGATTACATTAATAATCAAGTTAGTCCGAGCCATTTCTTGAATACTAAACCCGCTTCTCT 2446 |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 2469 TGATTACATTAATAATCAAGATAGTCCGAGCCATTTCTTGAATACTAAACCAGCTTCTCT 2410 Query 2447 CTTCTTGAGCTGAGACTCACTTTGAACTTTTGGAGCTTTGCCTTTATAAGCAGTCTTGTG 2506 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 2409 CTTCTTGAGCTGAGACTCGCTCTGAACTTTTGGAGCTTTGCCTTTATAAGCAGTCTTGTG 2350 Query 2507 ATACTTCAAGAAGAGCATCCGATACTTGTACTTATCAACAAACATATTCTTTTT 2560 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2349 ATACTTCAAGAAGAGCATCCGATACTTGTACTTATCAACAAACATATTTTTTTT 2296 Score = 132 bits (71), Expect = 2e-29 Identities = 79/83 (95%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 2302 GGGTGTGTATATAAACAGAAATCTTACAAAAGATAAATAAATCCAAAGCTTTATCAATGT 2361 |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2595 GGGTGTGTATATAAACCGAAATCTTACAAAAGATAAATAAATCCAAAGCTTTATAAATGT 2536 Query 2362 TTGTGCTGCCTCTATATAGATCT 2384 || | |||||||||||||||||| Sbjct 2535 TTTTACTGCCTCTATATAGATCT 2513 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 127072866619 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5