BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470289
Length=2560
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03090.2 | Symbols: MCCA | methylcrotonyl-CoA carboxylase al... 3975 0.0
AT1G03100.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 294 2e-78
> AT1G03090.2 | Symbols: MCCA | methylcrotonyl-CoA carboxylase
alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase
1 (MCCA) | chr1:739679-744184 FORWARD LENGTH=2606
Length=2606
Score = 3975 bits (2152), Expect = 0.0
Identities = 2308/2385 (97%), Gaps = 4/2385 (0%)
Strand=Plus/Plus
Query 1 CACTCGGAAAATTCGAAAATCGAGATCAAATGTCGATGATGACGGTGTGGGCACTCCGAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 8 CACTCGGAAAATTCGAAAATCGAGATCAAATGTCGATGATGACGGTGTGGGCACTTCGAC 67
Query 61 GGAATGTTCGCCGGAAAAATAACTCAATGCTCCTGAGATATATTTCCGACTCCGCATCGA 120
|||||||||| ||||||||| |||| |||||| ||||||||||||||| |||||||||||
Sbjct 68 GGAATGTTCGTCGGAAAAATCACTCGATGCTCGTGAGATATATTTCCGGCTCCGCATCGA 127
Query 121 TTAAGCCTAAGGATCGTTGTATTGAGAAGATTTTGGTGGCGAACAGAGGCGAGATTGCTT 180
| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 TGAAGCCTAAGGAGCAATGTATTGAGAAGATTTTGGTGGCGAACAGAGGCGAGATTGCTT 187
Query 181 GCCGGATCATGAGAACGGCGAAGCGTTTAGGGATTCAGACCGTTGCGGTTTACAGTGACG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 GCCGGATCATGAGAACGGCGAAGCGTTTAGGGATTCAGACCGTTGCGGTTTACAGTGACG 247
Query 241 CTGATAAAGATTCGCTCCACGTGAAATCTGCAGACGAAGCGGTTCGGATTGGCCCGCCCT 300
|||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 248 CTGATAGAGATTCGCTCCATGTGAAATCTGCAGACGAAGCGGTACGGATTGGCCCGCCCT 307
Query 301 CGGCTAGGCTCAGTTACCTCAGCGGTGCGACTATCATGGAGGCAGCGTCTCGGACTGGTG 360
||||||| || |||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 308 CGGCTAGACTTAGTTACCTCAGCGGTGTGACTATCATGGAGGCAGCGGCTCGGACTGGTG 367
Query 361 CACAGGCAATACATCCTGGCTATGGTTTTTTGTCAGAAAGTTCTGACTTTGCCCAACTCT 420
||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 368 CACAGGCAATACACCCTGGCTATGGGTTCTTGTCAGAAAGTTCTGACTTTGCCCAACTCT 427
Query 421 GTGAAGATTCGGGTCTAACATTCATTGGACCTCCAGCATCTGCAATTAGAGACATGGGTG 480
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 428 GTGAGGATTCGGGTCTAACATTCATTGGACCTCCAGCATCTGCTATTAGAGACATGGGTG 487
Query 481 ATAAAAGTGCATCCAAGAGAATAATGGGAGCTGCTGGAGTTCCTCTCGTGCCTGGATATC 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 488 ATAAAAGTGCATCCAAGAGAATTATGGGAGCTGCTGGAGTTCCTCTCGTGCCTGGATATC 547
Query 541 ATGGCCATGAGCAAGATATTGATCATATGAAGTCAGAAGCCGAAAATATTGGATACCCTA 600
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 548 ATGGCCATGAGCAAGATATTGATCATATGAAGTCAGAAGCTGAAAAGATTGGATACCCTA 607
Query 601 TAATAATCAAACCAACACATGGAGGTGGGGGGAAGGGAATGAGGATAGTGCAAAGTGAGA 660
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 608 TAATAATCAAGCCAACACATGGAGGTGGGGGGAAGGGAATGAGGATAGTGCAAAGTGGGA 667
Query 661 AGGATTTTGCTGACTCGTTTTTAGGG-GCTCAACGTGAAGCTGCTGCTTCTTTTGGCGTT 719
|||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||
Sbjct 668 AGGATTTTGCTGACTCGTTTTT-GGGTGCCCAACGTGAAGCTGCTGCTTCTTTTGGCGTT 726
Query 720 AACACTATTCTTCTCGAGAAATACATCACTCGACCGAGGCATATCGAAGTCCAGATATTT 779
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 727 AACACTATTCTTCTCGAGAAATACATTACTCGACCGAGGCATATAGAAGTCCAGATATTT 786
Query 780 GGTGACAAACATGGAAATGTTCTTCATCTATACGAAAGGGATTGCAGTGTGCAAAGAAGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 GGTGACAAACATGGAAATGTTCTTCATCTATACGAAAGGGATTGCAGTGTGCAAAGAAGA 846
Query 840 CACCAAAAGATTATCGAAGAAGCTCCTGCGCCTAATATATCTGAAAAGTTCCGCGCAAAC 899
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 CACCAAAAGATTATTGAAGAAGCTCCTGCGCCTAATATATCTGAAAAGTTCCGCGCAAAC 906
Query 900 TTAGGCCAAGCTGCTGTCTCTGCCGCACGGGCAGTTGGATATTACAATGCTGGGACGGTG 959
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 907 TTAGGCCAAGCTGCTGTCTCTGCGGCACGGGCAGTTGGATATTATAATGCTGGGACGGTG 966
Query 960 GAATTTATAGTTGACACTGAGTCTGATCAATTTTATTTTATGGAAATGAACACCCGTCTA 1019
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 GAATTTATAGTTGACACCGAGTCTGATCAATTTTATTTTATGGAAATGAACACCCGTCTA 1026
Query 1020 CAGGTCGAACATCCTGTAACCGAGATGATTGTTGGTCAAGATCTTGTAGAATGGCAAATT 1079
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1027 CAGGTCGAACATCCTGTAACTGAGATGATTGTTGGTCAAGATCTTGTGGAATGGCAAATT 1086
Query 1080 CGGGTTGCCAATGGGGAACCTCTCCCCATAAGCCAATCCGAGGTGCCAATGTCAGGTCAT 1139
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1087 CGGGTTGCCAATGGGGAACCTCTCCCCTTAAGCCAATCCGAGGTGCCAATGTCAGGTCAT 1146
Query 1140 GCCTTTGAGGCCAGGATATATGCTGAAAATGTTCCAAAAGGATTTCTTCCTGCAACTGGG 1199
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1147 GCCTTTGAGGCCAGGATATATGCTGAAAACGTTCCAAAAGGATTTCTTCCTGCAACTGGG 1206
Query 1200 GTCCTCAATCATTATCGCCCTGTTGCTGTCTCACCATCAGTTCGGGTTGAAACTGGAGTT 1259
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1207 GTCCTCAATCATTATCGCCCTGTTGCAGTCTCACCATCAGTTCGGGTTGAAACTGGAGTT 1266
Query 1260 GAACAAGGAGACACAGTTAGCATGCACTATGATCCTATGATTGCAAAGCTTGTTGTCTGG 1319
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 GAGCAAGGAGACACTGTTAGCATGCACTATGATCCTATGATTGCAAAGCTTGTTGTCTGG 1326
Query 1320 GGAGGTAATCGTGGCGAAGCTTTAGTGAAACTGAAGGATTGCTTGTCTAACTTTCAGGTA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 GGAGGTAATCGTGGCGAAGCTTTAGTGAAACTGAAGGATTGCTTGTCTAACTTTCAGGTA 1386
Query 1380 GCAGGTGTACCTACAAACATAAATTTCCTTCAAAAACTTGCTAGTCATAAGGAGTTTGCA 1439
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 GCAGGTGTACCTACGAACATAAATTTCCTTCAAAAACTTGCTAGTCATAAGGAGTTTGCA 1446
Query 1440 GTGGGCAATGTAGAAACTCATTTTATTGAGCACCATAAAAGTGATCTATTTGCTGACGAA 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 GTGGGCAATGTAGAAACTCATTTTATTGAGCACCATAAAAGTGATCTATTTGCTGACGAA 1506
Query 1500 AGCAATCCAGCTGCAACAGAAGTGGCATACAAGGCAGTCAAGCATAGTGCAGCATTGGTG 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 AGCAATCCAGCTGCAACAGAAGTGGCATACAAGGCAGTCAAGCATAGTGCAGCATTGGTG 1566
Query 1560 GCTGCTTGTATCTCCACAATCGAGCATTCTGCTTGGAATGAAAGTAGTCATGGGAAACTT 1619
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||
Sbjct 1567 GCTGCTTGTATCTCCACAATCGAGCATTCTACTTGGAATGAAAGTAATCATGGGAAAGTT 1626
Query 1620 CCATCGATATGGTATTCTCATCCTCCTTTTAGGGTCCATCATGAAGCCAAACAAACCATT 1679
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1627 CCATCGATATGGTATTCGAATCCTCCTTTTAGGGTCCATCATGAAGCCAAACAAACCATT 1686
Query 1680 GAGGTAGAGTGGAATAATGAATGCGAGGGAGCTGGCTCTAACCTTATATCACTCGGTGTA 1739
||| |||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1687 GAGCTAGAATGGAATAATGAATGCGAGGGAACTGGCTCTAACCTCATATCACTCGGTGTA 1746
Query 1740 ATATATCAACCAGATGGAAGCTATCTCATTCAGGAAGGCAATGATTCTCCAAGTTTAGAA 1799
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1747 AGATATCAACCAGATGGAAGCTATCTCATTGAGGAAGGCAATGATTCTCCAAGTTTAGAA 1806
Query 1800 GTCAGAGTAACTCGAGAAGGAAATTGCGATTTTAGAGTTGAAGCGGCTGGATTGAGCATG 1859
|||||||||| |||| |||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1807 CTCAGAGTAACACGAGCAGGAAAGTGCGATTTTAGAGTTGAAGCGGCCGGATTGAGCATG 1866
Query 1860 AATGTTAGTCTAGCCACGTACTTGAAGGATGGTTATAAGCATATCCATATATGGCATGGT 1919
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1867 AATGTTAGTCTAGCTGCGTACTTGAAGGATGGTTATAAGCATATCCATATATGGCATGGT 1926
Query 1920 TCAGAACACCATCAGTTCAAGCAGAAGGTAGGAATCGAATTCTCTGAAGATGAAGAAGGT 1979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1927 TCAGAACACCATCAGTTCAAGCAGAAGGTAGGAATCGAATTCTCTGAAGATGAAGAAGGT 1986
Query 1980 GTCCAACACAGAACCAGCTCCGAAACATCATCACACCCTCCAGGAACCATTGTGGCCCCC 2039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1987 GTCCAACACAGAACCAGCTCCGAAACATCATCACACCCTCCAGGAACCATTGTGGCCCCC 2046
Query 2040 ATGGCTGGTTTGGTAGTCAAGGTCCTTGTTGAAAACGAAGCCAAAGTAGATCAAGGTCAA 2099
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2047 ATGGCTGGTTTGGTAGTCAAGGTCCTTGTCGAAAACGAAGCCAAAGTAGATCAAGGTCAA 2106
Query 2100 CCTGTATTAGTCCTAGAGGCAATGAAGATGGAGCACGTTGTGAAAGCACCATCCTCTGGA 2159
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2107 CCTATATTAGTCCTAGAGGCAATGAAGATGGAGCACGTTGTGAAAGCACCATCCTCTGGA 2166
Query 2160 AGCATACAGGACCTCAAAGTTAAAGCAGGCCAACAGGTTTCAGATGGCAGTGCTCTATTC 2219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2167 AGCATACAGGACCTCAAAGTTAAAGCAGGCCAACAGGTTTCAGATGGCAGTGCTCTATTC 2226
Query 2220 AGAATCAAAGGATAAATAACACGATTTGCGATTGATCAAACCCATGCTCTGGCTTACCCG 2279
|| |||||||| ||||||||||||||||||||||||||| || || | ||||||||| ||
Sbjct 2227 AGGATCAAAGGGTAAATAACACGATTTGCGATTGATCAA-CC-ATTCGCTGGCTTACGCG 2284
Query 2280 AAACCTCAACTAATACGCATTTGGGTGTGTATATAAACAGAAATCTTACAAAAGATAAAT 2339
|||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2285 AAACCTGAACTAATAAGCATTTGGGTGTGTATATAAACCGAAATCTTACAAAAGATAAAT 2344
Query 2340 AAATCCAAAGCTTTATCAATGTTTGTGCTGCCTCTATATAGATCT 2384
|||||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 2345 AAATCCAAAGCTTTATAAATGTTTTTACTGCCTCTATATAGATCT 2389
Score = 294 bits (159), Expect = 2e-78
Identities = 169/174 (97%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 2387 TGATTACATTAATAATCAAGTTAGTCCGAGCCATTTCTTGAATACTAAACCCGCTTCTCT 2446
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 2433 TGATTACATTAATAATCAAGATAGTCCGAGCCATTTCTTGAATACTAAACCAGCTTCTCT 2492
Query 2447 CTTCTTGAGCTGAGACTCACTTTGAACTTTTGGAGCTTTGCCTTTATAAGCAGTCTTGTG 2506
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 2493 CTTCTTGAGCTGAGACTCGCTCTGAACTTTTGGAGCTTTGCCTTTATAAGCAGTCTTGTG 2552
Query 2507 ATACTTCAAGAAGAGCATCCGATACTTGTACTTATCAACAAACATATTCTTTTT 2560
|||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2553 ATACTTCAAGAAGAGCATCCGATACTTGTACTTATCAACAAACATATTTTTTTT 2606
> AT1G03100.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:743885-746479 REVERSE LENGTH=2595
Length=2595
Score = 294 bits (159), Expect = 2e-78
Identities = 169/174 (97%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 2387 TGATTACATTAATAATCAAGTTAGTCCGAGCCATTTCTTGAATACTAAACCCGCTTCTCT 2446
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 2469 TGATTACATTAATAATCAAGATAGTCCGAGCCATTTCTTGAATACTAAACCAGCTTCTCT 2410
Query 2447 CTTCTTGAGCTGAGACTCACTTTGAACTTTTGGAGCTTTGCCTTTATAAGCAGTCTTGTG 2506
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 2409 CTTCTTGAGCTGAGACTCGCTCTGAACTTTTGGAGCTTTGCCTTTATAAGCAGTCTTGTG 2350
Query 2507 ATACTTCAAGAAGAGCATCCGATACTTGTACTTATCAACAAACATATTCTTTTT 2560
|||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2349 ATACTTCAAGAAGAGCATCCGATACTTGTACTTATCAACAAACATATTTTTTTT 2296
Score = 132 bits (71), Expect = 2e-29
Identities = 79/83 (95%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 2302 GGGTGTGTATATAAACAGAAATCTTACAAAAGATAAATAAATCCAAAGCTTTATCAATGT 2361
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2595 GGGTGTGTATATAAACCGAAATCTTACAAAAGATAAATAAATCCAAAGCTTTATAAATGT 2536
Query 2362 TTGTGCTGCCTCTATATAGATCT 2384
|| | ||||||||||||||||||
Sbjct 2535 TTTTACTGCCTCTATATAGATCT 2513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127072866619
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5