BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470297
Length=937
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03180.1 | Symbols: | unknown protein; Has 36 Blast hits to... 1378 0.0
> AT1G03180.1 | Symbols: | unknown protein; Has 36 Blast hits
to 36 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa
- 3; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:773411-775344 FORWARD LENGTH=1095
Length=1095
Score = 1378 bits (746), Expect = 0.0
Identities = 897/965 (93%), Gaps = 30/965 (3%)
Strand=Plus/Plus
Query 1 GATCTG-TTTTCTTCTTCTTCGTCTTCTCTCACCCGCCTACTGGC-TTTTTTCAAATTTC 58
|||||| ||||| |||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 25 GATCTGTTTTTC-TCTTCTTCGTCTTCTCTCACCCGCCTACTGACTTTTTTTCAAATTTC 83
Query 59 TTCAGCAACACAT---T----TC----G------A-TT---GA---A-GATGGAAATGGC 93
||||||||||||| | || | | || || | ||||||||||||
Sbjct 84 TTCAGCAACACATACATACAGTCACAAGGTTTCCAATTTTCGATTCACGATGGAAATGGC 143
Query 94 GGAAGGGGAAGGAACTACGGAGGAGAACTACGACGTAGACATCGCGACCACCGCTTCTTC 153
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 144 GGAAGGGGAAGGAACTACAGAGGAGAACTACGACGTAGACATCGCGACCACCGCTTCTTC 203
Query 154 ACTAGGCGGCTCCGGCGTCTTCCATATCATCAATGACATAGTCGGTTTCGTTCTCTATAT 213
| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 204 ATTAGGCGGCTCCGGCGTCTTCCATATCATCAATGACATAGTCGGATTCGTCCTCTATAT 263
Query 214 GCATCAGCAGATCCCTTCGGTAATACAAGACATGAGCCTTGAATTTGATGGATTGCAAAC 273
||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 264 GCACCAGCAGATCCCTTCGGTATTACAAGACATGAGCCTTGAATTTGAAGGATTGCAAAC 323
Query 274 TCAATTTATGGATTTGGAGGCGAATCTTACACAACCCCAAGTGAAACCACTGGTTAGAAG 333
| ||||||||||||||||| |||||||| || |||| |||||||||||||||||||||||
Sbjct 324 TGAATTTATGGATTTGGAGACGAATCTTGCAGAACCTCAAGTGAAACCACTGGTTAGAAG 383
Query 334 AAAACTGGTGAGTAGAAAGAGAGAGGTGAAGAATGAAATTAAGAAACTGGAGAAACTGAT 393
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 384 AAAACTGATGAGTAGAAAGAGAGAGGTGAAGAATGAGATTAAGAAACTGGAGAAACTGAT 443
Query 394 GAAAACCATCACTAGTCTCCGAAGTGCGCTGCAGTTAATGATCCGTGAAGCTCCTGATAT 453
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 444 GAAAACCATCTCTAGTCTCCGAAGTGCGCTGCAGTTAATGATCCGTGAAGCTCCTGGCAT 503
Query 454 TCAGAAAGTTGTGTTGATTCTTGGTGGTAGTCCATTACGGCCTCAAAAAGCTTACGAGTT 513
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 504 TCAGAAAGTTGTGTTGATTCTTGGTGGTAGTCCATTACGGCCTCAAAATGCTTATGAGTT 563
Query 514 GTTATTCACACTACACAGTGATTC-TCTTCTGGGCTACGAAGGTGACTTTGCTAAATCCA 572
||||||||||| || ||| || | | |||| ||||||||||||||||||||||||||||
Sbjct 564 GTTATTCACACAACGCAGAGAC-CATGTTCTAGGCTACGAAGGTGACTTTGCTAAATCCA 622
Query 573 AAGCTGCAGAAGCACTTTCAAAAAAGACTATCCGAGCACTGATCTCGGCGGGTGCTGGAT 632
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 623 AAGCTGCAGAAGCACTTTCAAAAAAGACTATCCGAGCACTGATCTCGACGGGTGCTGGAT 682
Query 633 CAACTTCCTACCCAGGTCCAATGAGGCTCTTCATATTGGTTCATGCTCCACCTACTTTGA 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 CAACTTCCTACCCAGGTCCAATGAGGCTCTTCATATTGGTTCATGCTCCACCTACTTTGA 742
Query 693 ATCTTCCCCAACATTTCCTTCCTAAACGTGACTTCAGATACAACAGAAAGTTTGTGCCTT 752
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 ATCTTCCACAACATTTCCTTCCTAAACGTGACTTCAGATACAACAGAAAGTTTGTGCCTT 802
Query 753 CAAAGTTGAGATTCAAGTGCAGAACGCAAGACAATGCAACAAATTCTCCGCCCACAAATG 812
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 803 CAAAGTTGAGATTCAAGTGCAGAACGCAAGACAATGCAACAAATTCTCCTCCCACAAATG 862
Query 813 ATCTAATATGGTTTCAATGCCGACATGTGATAAAGGGATTAGCTTTCCATCAACCAGTTG 872
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 863 ATCTAATATGGTATCAATGTCGACATGTGATAAAGGGATTAGCTTTCCATCAACCAGTTG 922
Query 873 AAGAGTAAGACTAGAGAGTTTGTATGTATCTCTATATTGTTGTAACTAAACCCTGTTCCA 932
|||| ||||||| ||||||||| ||||||||| ||||||||||||||||||||||| ||
Sbjct 923 AAGAATAAGACTTTAGAGTTTGTTTGTATCTCTCTATTGTTGTAACTAAACCCTGTTGCA 982
Query 933 GATTT 937
||||
Sbjct 983 AATTT 987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45813542064
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5