BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470299 Length=2437 Score E Sequences producing significant alignments: (Bits) Value AT1G03190.1 | Symbols: ATXPD, UVH6 | RAD3-like DNA-binding heli... 4006 0.0 > AT1G03190.1 | Symbols: ATXPD, UVH6 | RAD3-like DNA-binding helicase protein | chr1:775527-780027 FORWARD LENGTH=2578 Length=2578 Score = 4006 bits (2169), Expect = 0.0 Identities = 2358/2447 (96%), Gaps = 21/2447 (1%) Strand=Plus/Plus Query 1 GGAGGAAGAGAAAGATGATCTTCAAGATCGAAGACGTAACTGTCTACTTCCCTTATGACA 60 ||||| | || ||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 127 GGAGG-A-AG-AAGATGATCTTTAAAATCGAAGACGTAACTGTCTACTTCCCTTATGACA 183 Query 61 ACATATACCCAGAACAATACGAATACATGGTTGAATTGAAGCGAGCCCTAGACGCTAAGG 120 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 184 ACATATATCCAGAACAATATGAATACATGGTTGAATTGAAGCGAGCCCTAGACGCTAAGG 243 Query 121 GACATTGTCTTCTCGAGATGCCTACCGGAACTGGCAAAACCATTGCTCTTCTCTCTCTAA 180 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 244 GACATTGTCTTCTCGAGATGCCTACCGGAACTGGTAAAACCATTGCTCTTCTCTCTCTAA 303 Query 181 TCACCAGCTATCGACTCTCTCGTCCTGATTCTCCGATCAAGCTTGTCTACTGTACTCGTA 240 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 304 TCACCAGCTATCGACTCTCTCGTCCTGATTCTCCGATCAAGCTTGTTTACTGTACTCGTA 363 Query 241 CTGTCCACGAGATGGAGAAAACATTGGGTGAGCTTAAGCTACTACATGACTACCAAGTAC 300 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 364 CTGTCCACGAGATGGAGAAAACGTTAGGTGAGCTTAAGCTACTACATGACTACCAAGTAC 423 Query 301 GCCATCTCGGCGCCCAGGCTAAGATCCTCGCCATTGGTCTTTCCTCTCGGAAGAATCTTT 360 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 424 GCCATCTCGGCACCCAGGCTAAGATCCTCGCCCTTGGTCTTTCCTCTCGGAAGAATCTTT 483 Query 361 GCGTTAATACTAAGGTTTTAGCTGCCGAGAATCGTGATTCTGTTGATGCCGCCTGTAGGA 420 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 484 GCGTTAATACTAAGGTTTTAGCAGCCGAGAATCGTGATTCTGTTGATGCGGCCTGTAGGA 543 Query 421 AACGGACTGCTAGTTGGGTTAGGGCTTTGTCCACGGAGAATCCAAATGTAGAACTCTGTG 480 |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 544 AACGAACTGCTAGCTGGGTTAGGGCTTTGTCCACGGAGAATCCAAATGTAGAACTCTGTG 603 Query 481 ACTACTTTGAGAACTATGAAAAGGCTGCTGACAATGCGTTGTTGCCTCCTGGTGTTTATA 540 ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 604 ACTTCTTTGAGAACTATGAAAAGGCTGCTGAGAATGCGTTGTTGCCTCCTGGTGTTTATA 663 Query 541 CTTTAGAGGATCTAAGGGCGTTTGGTAAGAATCGTGGATGGTGCCCTTACTTTCTCGCGA 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 664 CTTTAGAGGATCTAAGGGCGTTTGGTAAGAATCGTGGATGGTGCCCTTACTTTCTCGCGA 723 Query 601 GGCATATGGTTCAGTTCGCCAACGTTATTGTTTATAGCTACCAATACTTACTGGATCCTA 660 |||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 724 GGCATATGATTCAGTTCGCCAACGTTATTGTTTACAGCTACCAATACCTACTGGATCCTA 783 Query 661 AGGTTGCTGGAATT-ATATCAAAGGAGTTACAAAAGGAGTCAGTTGTAGTGTTTGACGAG 719 |||||||||| || |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 784 AGGTTGCTGG-GTTCATATCAAAGGAGTTACAAAAAGAGTCAGTTGTAGTGTTTGACGAG 842 Query 720 GCCCATAATATCGATAACGTGTGTATTGAAGCACTCAGCGTCAGTGTGAGGAGGGTTACA 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 843 GCCCATAATATCGATAACGTGTGTATTGAAGCACTCAGCGTCAGTGTGAGGAGGGTTACA 902 Query 780 CTTGAAGGAGCTAATCGAAATCTTAATAAGATTAGGCAAGAAATTGATAGGTTCAAGGCT 839 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 903 CTTGAAGGAGCTAATCGAAATCTTAATAAGATAAGGCAAGAAATTGATAGGTTCAAGGCT 962 Query 840 ACTGATGCAGGAAGATTGCGAGCTGAATACAACCGGCTGGTTGAGGGTTTAGCACTGAGA 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 963 ACTGATGCAGGAAGATTGCGAGCTGAATACAACCGGCTGGTTGAGGGTTTAGCACTGAGA 1022 Query 900 GGGGACTTATCTGGAAGTGATCAATGGCTTGCAAACCCTGCACTGCCCCATGATATTCTA 959 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1023 GGGGACTTATCTGGAGGTGATCAATGGCTTGCAAACCCTGCACTGCCTCATGATATTCTA 1082 Query 960 AAGGAGGCTGTCCCGGGGAATATCAGACGGGCTGAGCATTTTGTGCATGTTTTACGTCGA 1019 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1083 AAGGAGGCTGTCCCGGGGAATATTAGACGGGCTGAGCATTTTGTGCATGTTTTACGCCGA 1142 Query 1020 TTACTTCAGTATTTGGGGGTACGGCTTGACACTGAGAACGTAGAGAAAGAAAGCCCTGTT 1079 ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 1143 TTACTTCAGTACTTGGGGGTACGGCTGGACACTGAGAATGTAGAGAAAGAAAGCCCTGTT 1202 Query 1080 AGCTTTGTATCGTCGCTGAATTCACAGGCTGGCATTGAGCAGAAAACACTGAAGTTCTGT 1139 |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 1203 AGCTTTGTATCGTCACTGAATTCTCAGGCTGGAATTGAGCAGAAAACACTGAAGTTCTGT 1262 Query 1140 TATGACCGGCTCCAGTCTCTCATGCTAACCCTTGAAATTACAGATACAGATGAGTTTTTG 1199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1263 TATGACCGGCTCCAGTCTCTCATGCTAACCCTTGAAATTACAGATACAGATGAGTTTTTG 1322 Query 1200 CCTATCCAGACAGTGTGCGACTTTGCAACTCTTGTTGGGACATATGCCCGGGGATTTTCC 1259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1323 CCTATCCAGACAGTGTGCGACTTTGCAACTCTTGTTGGGACATATGCCCGGGGATTTTCC 1382 Query 1260 ATCATAATTGAGCCTTATGACGAGAGAATGCCCCATATTCCAGATCCTATATTGCAGTTG 1319 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1383 ATCATCATCGAGCCTTATGACGAGAGAATGCCCCATATTCCAGATCCTATATTGCAGTTG 1442 Query 1320 AGCTGTCATGATGCGTCTCTGGCGATCAAACCGGTGTTTGATCGTTTCCAATCAGTCGTG 1379 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1443 AGCTGTCATGATGCGTCTCTGGCGATCAAACCGGTGTTTGATCGTTTCCAGTCAGTCGTG 1502 Query 1380 ATTACATCAGGCACGTTGAGCCCAATTGATCTTTATCCACGTCTTCTTAGTTTCACTCCT 1439 |||||||||||||| |||||||||||||||||||| || |||||||||| |||||||||| Sbjct 1503 ATTACATCAGGCACATTGAGCCCAATTGATCTTTACCCCCGTCTTCTTAATTTCACTCCT 1562 Query 1440 GTTGTTAGTCGAAGCTTTAAGATGTCAATGACACGAGACTGCATCTGCCCTATGGTTCTG 1499 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1563 GTTGTTAGTCGAAGCTTTAAGATGTCAATGACACGAGACTGCATCTGCCCTATGGTTCTA 1622 Query 1500 ACTCGGGGAAGTGATCAGCTTCCTGTTAGCACCAAATTTGACATGAGAAGTGATCCTGGT 1559 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1623 ACTCGGGGAAGTGATCAGCTTCCTGTTAGCACCAAATTTGACATGAGAAGTGATCCTGGT 1682 Query 1560 GTTGTGAGGAATTACGGAAAGCTTTTGGTAGAGATGGTATCTATTGTTCCTGATGGAGTT 1619 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1683 GTTGTGAGGAATTACGGAAAGCTTTTGGTAGAGATGGTATCTATTGTTCCTGATGGAGTT 1742 Query 1620 GTCTGCTTCTTTGTTAGCTACTCATACATGGATGGCATTATTGCTACATGGAATGAAACT 1679 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 1743 GTCTGCTTCTTTGTTAGTTACTCATATATGGATGGCATTATTGCTACATGGAATGAAACT 1802 Query 1680 GGAATTCTGAAGGAAATAATGCAACAGAAGCTTGTTTTCATTGAAACACAAGATGTTGTA 1739 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1803 GGAATTCTGAAGGAAATAATGCAACAGAAGCTTGTTTTCATTGAAACACAAGATGTTGTA 1862 Query 1740 GAAACAACATTGGCACTGGATAATTATCGCAGGGCTTGCGATTGCGGAAGAGGTGCTGTT 1799 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1863 GAAACAACATTGGCACTGGATAATTATCGCAGGGCTTGCGATTGCGGAAGAGGTGCAGTT 1922 Query 1800 TTCTTCTCTGTGGCCAGGGGGAAAGTTGCTGAAGGTATCGATTTTGATCGTCATTATGGA 1859 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1923 TTCTTCTCTGTGGCCAGGGGGAAAGTTGCTGAAGGTATCGATTTTGATCGTCATTATGGA 1982 Query 1860 AGACTGGTTGTAATGTACGGAGTACCATTCCAGTATACATTAAGCAAGATATTACGAGCA 1919 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1983 AGACTGGTTGTAATGTACGGAGTACCATTCCAGTATACATTAAGCAAGATATTACGAGCA 2042 Query 1920 AGATTGGAGTATTTGCATGATACGTTTCAAATAAAAGAAGGCGATTTCCTAACTTTTGAT 1979 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 2043 AGATTGGAGTATTTGCACGATACATTTCAAATAAAAGAAGGCGATTTCCTAACTTTTGAT 2102 Query 1980 GCCTTGAGGCAAGCAGCTCAATGTGTAGGGCGAGTAATCCGGTCAAAGGCTGACTATGGG 2039 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2103 GCCTTGAGGCAAGCAGCTCAATGTGTAGGGCGAGTAATCCGGTCAAAGGCTGATTATGGG 2162 Query 2040 ATGATGATATTTGCAGACAAAAGATATAGCCGTCATGATAAGCGGTCCAAACTACCTGGT 2099 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2163 ATGATGATATTTGCAGACAAAAGATACAGCCGTCATGATAAGCGGTCCAAACTACCTGGT 2222 Query 2100 TGGATACTTTCGCATCTGCGTGATGCACACTTGAATCTAAGCACTGACATGGCTATTCAC 2159 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2223 TGGATACTTTCGCATCTGCGTGATGCACACTTGAATCTAAGCACTGATATGGCTATTCAC 2282 Query 2160 ATTGCTCGCGAGTTTCTTCGGAAAATGGCTCAACCGTATGATAAGGCGGGGACTATGGGA 2219 |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 2283 ATTGCTCGAGAGTTTCTTCGGAAAATGGCTCAACCGTATGATAAGGCGGGTACAATGGGA 2342 Query 2220 AGGAAAACTCTGTTGACACAAGAAGATTTGGAGAAGATGGCTGAGACCGGTGTGCAAGAC 2279 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2343 AGGAAAACTCTGTTGACACAAGAAGATTTGGAGAAGATGGCTGAGACTGGTGTGCAAGAC 2402 Query 2280 ATGGCTTATTAGTAAACCAGTTTGTGTGtttttttttttttttt-t---tCAAAACTT-T 2334 |||||||||||||||| |||||||| |||| |||||| ||| | |||||| || | Sbjct 2403 ATGGCTTATTAGTAAATCAGTTTGTTTGTTATTTTTTGGTTTAGGTCAATCAAAAATTGT 2462 Query 2335 CATAGCaaaaaaaaTTC-CTATAGGGTGCCATATTTGTTCTTTTGTC--GATGATTTTCA 2391 ||||||||| ||| || |||| | || ||||||||||| || ||||||||||| Sbjct 2463 TGTAGCAAAAATT-TTCACTGTAGG-T---AT-TTTGTTCTTTT-TCTTGATGATTTTCA 2515 Query 2392 AGAATCGAATTGAAATTTAAAGCTCGTAAAAGTT-CGGTTTGGGTTT 2437 |||||||||||||||||||| ||||||||||||| || ||||| ||| Sbjct 2516 AGAATCGAATTGAAATTTAAGGCTCGTAAAAGTTTCGTTTTGGTTTT 2562 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 121033513995 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5