BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470299
Length=2437
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03190.1 | Symbols: ATXPD, UVH6 | RAD3-like DNA-binding heli... 4006 0.0
> AT1G03190.1 | Symbols: ATXPD, UVH6 | RAD3-like DNA-binding helicase
protein | chr1:775527-780027 FORWARD LENGTH=2578
Length=2578
Score = 4006 bits (2169), Expect = 0.0
Identities = 2358/2447 (96%), Gaps = 21/2447 (1%)
Strand=Plus/Plus
Query 1 GGAGGAAGAGAAAGATGATCTTCAAGATCGAAGACGTAACTGTCTACTTCCCTTATGACA 60
||||| | || ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 127 GGAGG-A-AG-AAGATGATCTTTAAAATCGAAGACGTAACTGTCTACTTCCCTTATGACA 183
Query 61 ACATATACCCAGAACAATACGAATACATGGTTGAATTGAAGCGAGCCCTAGACGCTAAGG 120
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 184 ACATATATCCAGAACAATATGAATACATGGTTGAATTGAAGCGAGCCCTAGACGCTAAGG 243
Query 121 GACATTGTCTTCTCGAGATGCCTACCGGAACTGGCAAAACCATTGCTCTTCTCTCTCTAA 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 244 GACATTGTCTTCTCGAGATGCCTACCGGAACTGGTAAAACCATTGCTCTTCTCTCTCTAA 303
Query 181 TCACCAGCTATCGACTCTCTCGTCCTGATTCTCCGATCAAGCTTGTCTACTGTACTCGTA 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 304 TCACCAGCTATCGACTCTCTCGTCCTGATTCTCCGATCAAGCTTGTTTACTGTACTCGTA 363
Query 241 CTGTCCACGAGATGGAGAAAACATTGGGTGAGCTTAAGCTACTACATGACTACCAAGTAC 300
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 364 CTGTCCACGAGATGGAGAAAACGTTAGGTGAGCTTAAGCTACTACATGACTACCAAGTAC 423
Query 301 GCCATCTCGGCGCCCAGGCTAAGATCCTCGCCATTGGTCTTTCCTCTCGGAAGAATCTTT 360
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 424 GCCATCTCGGCACCCAGGCTAAGATCCTCGCCCTTGGTCTTTCCTCTCGGAAGAATCTTT 483
Query 361 GCGTTAATACTAAGGTTTTAGCTGCCGAGAATCGTGATTCTGTTGATGCCGCCTGTAGGA 420
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 484 GCGTTAATACTAAGGTTTTAGCAGCCGAGAATCGTGATTCTGTTGATGCGGCCTGTAGGA 543
Query 421 AACGGACTGCTAGTTGGGTTAGGGCTTTGTCCACGGAGAATCCAAATGTAGAACTCTGTG 480
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 AACGAACTGCTAGCTGGGTTAGGGCTTTGTCCACGGAGAATCCAAATGTAGAACTCTGTG 603
Query 481 ACTACTTTGAGAACTATGAAAAGGCTGCTGACAATGCGTTGTTGCCTCCTGGTGTTTATA 540
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 604 ACTTCTTTGAGAACTATGAAAAGGCTGCTGAGAATGCGTTGTTGCCTCCTGGTGTTTATA 663
Query 541 CTTTAGAGGATCTAAGGGCGTTTGGTAAGAATCGTGGATGGTGCCCTTACTTTCTCGCGA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CTTTAGAGGATCTAAGGGCGTTTGGTAAGAATCGTGGATGGTGCCCTTACTTTCTCGCGA 723
Query 601 GGCATATGGTTCAGTTCGCCAACGTTATTGTTTATAGCTACCAATACTTACTGGATCCTA 660
|||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 724 GGCATATGATTCAGTTCGCCAACGTTATTGTTTACAGCTACCAATACCTACTGGATCCTA 783
Query 661 AGGTTGCTGGAATT-ATATCAAAGGAGTTACAAAAGGAGTCAGTTGTAGTGTTTGACGAG 719
|||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 784 AGGTTGCTGG-GTTCATATCAAAGGAGTTACAAAAAGAGTCAGTTGTAGTGTTTGACGAG 842
Query 720 GCCCATAATATCGATAACGTGTGTATTGAAGCACTCAGCGTCAGTGTGAGGAGGGTTACA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GCCCATAATATCGATAACGTGTGTATTGAAGCACTCAGCGTCAGTGTGAGGAGGGTTACA 902
Query 780 CTTGAAGGAGCTAATCGAAATCTTAATAAGATTAGGCAAGAAATTGATAGGTTCAAGGCT 839
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 903 CTTGAAGGAGCTAATCGAAATCTTAATAAGATAAGGCAAGAAATTGATAGGTTCAAGGCT 962
Query 840 ACTGATGCAGGAAGATTGCGAGCTGAATACAACCGGCTGGTTGAGGGTTTAGCACTGAGA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ACTGATGCAGGAAGATTGCGAGCTGAATACAACCGGCTGGTTGAGGGTTTAGCACTGAGA 1022
Query 900 GGGGACTTATCTGGAAGTGATCAATGGCTTGCAAACCCTGCACTGCCCCATGATATTCTA 959
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1023 GGGGACTTATCTGGAGGTGATCAATGGCTTGCAAACCCTGCACTGCCTCATGATATTCTA 1082
Query 960 AAGGAGGCTGTCCCGGGGAATATCAGACGGGCTGAGCATTTTGTGCATGTTTTACGTCGA 1019
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1083 AAGGAGGCTGTCCCGGGGAATATTAGACGGGCTGAGCATTTTGTGCATGTTTTACGCCGA 1142
Query 1020 TTACTTCAGTATTTGGGGGTACGGCTTGACACTGAGAACGTAGAGAAAGAAAGCCCTGTT 1079
||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1143 TTACTTCAGTACTTGGGGGTACGGCTGGACACTGAGAATGTAGAGAAAGAAAGCCCTGTT 1202
Query 1080 AGCTTTGTATCGTCGCTGAATTCACAGGCTGGCATTGAGCAGAAAACACTGAAGTTCTGT 1139
|||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1203 AGCTTTGTATCGTCACTGAATTCTCAGGCTGGAATTGAGCAGAAAACACTGAAGTTCTGT 1262
Query 1140 TATGACCGGCTCCAGTCTCTCATGCTAACCCTTGAAATTACAGATACAGATGAGTTTTTG 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 TATGACCGGCTCCAGTCTCTCATGCTAACCCTTGAAATTACAGATACAGATGAGTTTTTG 1322
Query 1200 CCTATCCAGACAGTGTGCGACTTTGCAACTCTTGTTGGGACATATGCCCGGGGATTTTCC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 CCTATCCAGACAGTGTGCGACTTTGCAACTCTTGTTGGGACATATGCCCGGGGATTTTCC 1382
Query 1260 ATCATAATTGAGCCTTATGACGAGAGAATGCCCCATATTCCAGATCCTATATTGCAGTTG 1319
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 ATCATCATCGAGCCTTATGACGAGAGAATGCCCCATATTCCAGATCCTATATTGCAGTTG 1442
Query 1320 AGCTGTCATGATGCGTCTCTGGCGATCAAACCGGTGTTTGATCGTTTCCAATCAGTCGTG 1379
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1443 AGCTGTCATGATGCGTCTCTGGCGATCAAACCGGTGTTTGATCGTTTCCAGTCAGTCGTG 1502
Query 1380 ATTACATCAGGCACGTTGAGCCCAATTGATCTTTATCCACGTCTTCTTAGTTTCACTCCT 1439
|||||||||||||| |||||||||||||||||||| || |||||||||| ||||||||||
Sbjct 1503 ATTACATCAGGCACATTGAGCCCAATTGATCTTTACCCCCGTCTTCTTAATTTCACTCCT 1562
Query 1440 GTTGTTAGTCGAAGCTTTAAGATGTCAATGACACGAGACTGCATCTGCCCTATGGTTCTG 1499
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 GTTGTTAGTCGAAGCTTTAAGATGTCAATGACACGAGACTGCATCTGCCCTATGGTTCTA 1622
Query 1500 ACTCGGGGAAGTGATCAGCTTCCTGTTAGCACCAAATTTGACATGAGAAGTGATCCTGGT 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 ACTCGGGGAAGTGATCAGCTTCCTGTTAGCACCAAATTTGACATGAGAAGTGATCCTGGT 1682
Query 1560 GTTGTGAGGAATTACGGAAAGCTTTTGGTAGAGATGGTATCTATTGTTCCTGATGGAGTT 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1683 GTTGTGAGGAATTACGGAAAGCTTTTGGTAGAGATGGTATCTATTGTTCCTGATGGAGTT 1742
Query 1620 GTCTGCTTCTTTGTTAGCTACTCATACATGGATGGCATTATTGCTACATGGAATGAAACT 1679
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1743 GTCTGCTTCTTTGTTAGTTACTCATATATGGATGGCATTATTGCTACATGGAATGAAACT 1802
Query 1680 GGAATTCTGAAGGAAATAATGCAACAGAAGCTTGTTTTCATTGAAACACAAGATGTTGTA 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1803 GGAATTCTGAAGGAAATAATGCAACAGAAGCTTGTTTTCATTGAAACACAAGATGTTGTA 1862
Query 1740 GAAACAACATTGGCACTGGATAATTATCGCAGGGCTTGCGATTGCGGAAGAGGTGCTGTT 1799
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1863 GAAACAACATTGGCACTGGATAATTATCGCAGGGCTTGCGATTGCGGAAGAGGTGCAGTT 1922
Query 1800 TTCTTCTCTGTGGCCAGGGGGAAAGTTGCTGAAGGTATCGATTTTGATCGTCATTATGGA 1859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1923 TTCTTCTCTGTGGCCAGGGGGAAAGTTGCTGAAGGTATCGATTTTGATCGTCATTATGGA 1982
Query 1860 AGACTGGTTGTAATGTACGGAGTACCATTCCAGTATACATTAAGCAAGATATTACGAGCA 1919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1983 AGACTGGTTGTAATGTACGGAGTACCATTCCAGTATACATTAAGCAAGATATTACGAGCA 2042
Query 1920 AGATTGGAGTATTTGCATGATACGTTTCAAATAAAAGAAGGCGATTTCCTAACTTTTGAT 1979
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2043 AGATTGGAGTATTTGCACGATACATTTCAAATAAAAGAAGGCGATTTCCTAACTTTTGAT 2102
Query 1980 GCCTTGAGGCAAGCAGCTCAATGTGTAGGGCGAGTAATCCGGTCAAAGGCTGACTATGGG 2039
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2103 GCCTTGAGGCAAGCAGCTCAATGTGTAGGGCGAGTAATCCGGTCAAAGGCTGATTATGGG 2162
Query 2040 ATGATGATATTTGCAGACAAAAGATATAGCCGTCATGATAAGCGGTCCAAACTACCTGGT 2099
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2163 ATGATGATATTTGCAGACAAAAGATACAGCCGTCATGATAAGCGGTCCAAACTACCTGGT 2222
Query 2100 TGGATACTTTCGCATCTGCGTGATGCACACTTGAATCTAAGCACTGACATGGCTATTCAC 2159
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2223 TGGATACTTTCGCATCTGCGTGATGCACACTTGAATCTAAGCACTGATATGGCTATTCAC 2282
Query 2160 ATTGCTCGCGAGTTTCTTCGGAAAATGGCTCAACCGTATGATAAGGCGGGGACTATGGGA 2219
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 2283 ATTGCTCGAGAGTTTCTTCGGAAAATGGCTCAACCGTATGATAAGGCGGGTACAATGGGA 2342
Query 2220 AGGAAAACTCTGTTGACACAAGAAGATTTGGAGAAGATGGCTGAGACCGGTGTGCAAGAC 2279
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2343 AGGAAAACTCTGTTGACACAAGAAGATTTGGAGAAGATGGCTGAGACTGGTGTGCAAGAC 2402
Query 2280 ATGGCTTATTAGTAAACCAGTTTGTGTGtttttttttttttttt-t---tCAAAACTT-T 2334
|||||||||||||||| |||||||| |||| |||||| ||| | |||||| || |
Sbjct 2403 ATGGCTTATTAGTAAATCAGTTTGTTTGTTATTTTTTGGTTTAGGTCAATCAAAAATTGT 2462
Query 2335 CATAGCaaaaaaaaTTC-CTATAGGGTGCCATATTTGTTCTTTTGTC--GATGATTTTCA 2391
||||||||| ||| || |||| | || ||||||||||| || |||||||||||
Sbjct 2463 TGTAGCAAAAATT-TTCACTGTAGG-T---AT-TTTGTTCTTTT-TCTTGATGATTTTCA 2515
Query 2392 AGAATCGAATTGAAATTTAAAGCTCGTAAAAGTT-CGGTTTGGGTTT 2437
|||||||||||||||||||| ||||||||||||| || ||||| |||
Sbjct 2516 AGAATCGAATTGAAATTTAAGGCTCGTAAAAGTTTCGTTTTGGTTTT 2562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121033513995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5