BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470302
Length=1414
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03220.1 | Symbols: | Eukaryotic aspartyl protease family p... 2080 0.0
AT1G03230.1 | Symbols: | Eukaryotic aspartyl protease family p... 1799 0.0
> AT1G03220.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr1:787122-788651 FORWARD LENGTH=1530
Length=1530
Score = 2080 bits (1126), Expect = 0.0
Identities = 1257/1321 (95%), Gaps = 6/1321 (0%)
Strand=Plus/Plus
Query 1 TCTCTAACAATGGCGtcttctccaatcatcttctccgttcttcttctcttcatcttctca 60
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 13 TCTCTAACAATGGCGCCTTCTCCGATCATCTTCTCCGTTCTTCTTCTCTTCATCTTCTCA 72
Query 61 ctttcatcatctgctcaaacatctttcCGTCCCAAAGCTCTCCTTCTCCCAGTAACAAAA 120
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCTCATCATCTGCTCAAACACCTTTCCGTCCCAAAGCTCTCCTTCTCCCAGTAACAAAA 132
Query 121 GACCAATCTACCCTCCAGTACACAACCGTCATCAACCAACGCACACCTCTCGTCCCCGCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 GACCAATCTACCCTCCAGTACACAACCGTCATCAACCAACGCACACCTCTCGTCCCCGCT 192
Query 181 TCCGTCGTCTTCGACCTCGGTGGTCGAGAACTCTGGGTCGACTGCGACAAAGACTACGTC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 193 TCCGTCGTCTTCGACCTCGGTGGTCGAGAACTCTGGGTCGACTGCGACAAAGGCTACGTC 252
Query 241 TCCTCCACTTACCAATCTCCTCGCTGCAACTCCGCCGTGTGCTCACGCGCCGGCTCCAAC 300
|||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||| |
Sbjct 253 TCCTCCACTTACCAGTCTCCTCGCTGCAACTCCGCCGTCTGCTCACGTGCCGGCTCCA-C 311
Query 301 A-GCTGCGGCACATGCTTTTCTCCTCCGAGACCTGGCTGTAGTAACAACACTTGCGGCGG 359
| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 312 AAGCTGCGGCACATGCTTCTCCCCTCCGAGACCTGGCTGTAGTAACAACACTTGCGGCGG 371
Query 360 CATTCCAGATAACACCGTCACCGGTACCGCTACTTCCGGCGAATTTGCTTTAGACGTTGT 419
|||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 372 CATTCCGGATAACACCGTTACCGGTACCGCAACTTCCGGCGAATTTGCTTTAGACGTTGT 431
Query 420 GTCGATCCAGTCCACTAACGGATCCAATCCGGGTC-GGGTCGTTAAAATCCCCAACTTGA 478
||| ||||||||||||||||||||||||||||| | |||||||||||||||| || ||||
Sbjct 432 GTCTATCCAGTCCACTAACGGATCCAATCCGGG-CAGGGTCGTTAAAATCCCAAATTTGA 490
Query 479 TCTTCGATTGTGGAGCAACGTTTCTTCTTAAAGGACTTGCTAGTGGAACCGTTGGTATGG 538
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 491 TCTTCGATTGTGGAGCAACGTTTCTTCTTAAAGGACTCGCTAAAGGAACCGTTGGTATGG 550
Query 539 CCGGAATGGGACGTCACAACATCGGTTTACCGTCGCAGTTCGCCGCCGCGTTTAGCTTCA 598
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 551 CGGGAATGGGACGTCACAACATCGGTTTACCGTCGCAATTCGCCGCCGCGTTTAGCTTCC 610
Query 599 ACCGCAAATTCGCCGTGTGTCTAACTTCCGGCAGAGGAGTCGCCTTCTTCGGCAACGGAC 658
|||| ||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||
Sbjct 611 ACCGTAAATTCGCCGTCTGTCTAACTTCCGGTAAAGGCGTCGCCTTCTTCGGCAACGGAC 670
Query 659 CTTACGTTTTCCTCCCCGGAATCCAGATCTCAGGTCTCCAAACGACGCCGCTTCTCATTA 718
||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| |
Sbjct 671 CTTACGTTTTCCTTCCCGGAATCCAGATCTCAAGTCTCCAAACGACGCCCCTTCTCATCA 730
Query 719 ATCCGGTGAGCACTGCTTCTGCGTTTTCACAAGGTGAGAAATCCTCAGAGTACTTCATCG 778
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 731 ATCCGGTCAGCACTGCTTCTGCGTTTTCACAAGGTGAGAAATCCTCAGAGTACTTTATCG 790
Query 779 GCGTGACGGCGATTAAAATCGTCGAGAAAACAGTTCCGATCAATCCAACGCTTTTGAAAA 838
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 791 GCGTGACGGCGATTCAAATCGTCGAGAAAACAGTTCCGATCAATCCAACGCTATTGAAGA 850
Query 839 TCAACGCAAGTACCGG-ATTCGGAGGAACCAAAATCAGCTCCGTGAATCCGTACACGGTG 897
| |||||||||||||| || |||||||||||||||||||||||| ||||| |||||||||
Sbjct 851 TTAACGCAAGTACCGGTAT-CGGAGGAACCAAAATCAGCTCCGTCAATCCTTACACGGTG 909
Query 898 TTGGAGTCATCGATCTACAATGCTTTTACGTCGGAGTTCGTCAAACAAGCAGCGGCGAGG 957
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 910 TTGGAGTCATCGATCTACAATGCTTTTACGTCGGAGTTCGTTAAACAAGCAGCGGCGAGG 969
Query 958 AACATCACGAGAGTAGCGTCGGTGAAACCGTTCAGCGCGTGTTTCAGCACGCAGAACGTC 1017
| ||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 970 AGCATCAAGAGAGTAGCGTCGGTGAAACCGTTCGGCGCGTGTTTCAGCACGAAGAACGTC 1029
Query 1018 GGCGTCACGCGCCTGGGATACGCCGTGCCGGAGATTCAGCTTGTGCTTCATAGCAACGAC 1077
||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1030 GGCGTGACGCGCCTAGGATACGCCGTGCCGGAGATTGAGCTTGTGCTTCATAGCAAAGAC 1089
Query 1078 GTCGTCTGGAGGATCTTTGGAGCTAACTCGATGGTGAGTGTCAGTGATGACGTCATCTGC 1137
||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1090 GTCGTTTGGAGGATATTTGGAGCCAACTCGATGGTGAGTGTCAGTGATGACGTCATCTGT 1149
Query 1138 TTAGGTTTCGTTGACGGAGGAGTCAACGCAAGAACCTCTGTGGTGATCGGAGGGTTTCAG 1197
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1150 TTGGGTTTCGTTGACGGAGGAGTCAACGCAAGAACCTCTGTTGTGATTGGAGGGTTTCAG 1209
Query 1198 TTGGAGGATAATTTGATCGAATTTGATTTGGCGAGTAACAGATTTGGGTTTAGTTCCACG 1257
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1210 TTGGAGGATAATTTGATCGAATTTGATTTGGCGAGTAACAAATTTGGGTTTAGTTCCACG 1269
Query 1258 TTATTGGGCCGTCGCACTAACTGCGCCAACTTCAATTTCACTTCCACTGCTTGATTAAAT 1317
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 TTATTGGGCCGTCAAACTAACTGCGCCAACTTCAATTTCACTTCCACTGCTTGATTAAAT 1329
Query 1318 T 1318
|
Sbjct 1330 T 1330
Score = 121 bits (65), Expect = 2e-26
Identities = 88/98 (90%), Gaps = 6/98 (6%)
Strand=Plus/Plus
Query 1320 TATTATATTATGTTTGATGTGATTAATAAGGAGCCAATGGAATCATT-TCTTGGCATTT- 1377
||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||
Sbjct 1372 TATTATATTATGTTTGATGTGATTAATAAAGAGCCAATGGAATCATTAT-TTGGCATTTG 1430
Query 1378 TTCATCA-CTTGATTTAAATAAATTATGTAATGAATGA 1414
|| |||| || ||||| |||||||||||||| || |||
Sbjct 1431 TT-ATCAACT-GATTTGAATAAATTATGTAACGAGTGA 1466
> AT1G03230.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr1:790091-791592 FORWARD LENGTH=1502
Length=1502
Score = 1799 bits (974), Expect = 0.0
Identities = 1214/1329 (91%), Gaps = 19/1329 (1%)
Strand=Plus/Plus
Query 1 TCTCTAACAATGGCGtcttctc-ca--atcatcttctccgttcttcttctcttcatcttc 57
|||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||
Sbjct 11 TCTCTAACAATGGCGTCTTCTCGAATCATCATCTTCTCCGTTCTTCTTCTCTCCATCTTC 70
Query 58 tcactttcatcatctgctcaaacatctttcCGTCCCAAAGCTCTCCTTCTCCCAGTAACA 117
||||| ||||||||||| ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 71 TCACTCTCATCATCTGCCCAACCATCTTTCCGCCCCAAAGCTCTCCTTCTCCCAGTAACA 130
Query 118 AAAGACCAATCTACCCTCCAGTACACAACCGTCATCAACCAACGCACACCTCTCGTCCCC 177
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 AAAGACCCATCTACCCTCCAGTACACAACCGTCATCAACCAACGCACACCTCTCGTCCCC 190
Query 178 GCTTCCGTCGTCTTCGACCTCGGTGGTCGAGAACTCTGGGTCGACTGCGACAAAGACTAC 237
||||||||||| ||||||||||||||||||||| ||||||||||||| ||| ||| ||||
Sbjct 191 GCTTCCGTCGTATTCGACCTCGGTGGTCGAGAATTCTGGGTCGACTGTGACCAAGGCTAC 250
Query 238 GTCTCCTCCACTTACCAATCTCCTCGCTGCAACTCCGCCGTGTGCTCACGCGCCGGCTCC 297
|||||| ||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 251 GTCTCCACCACTTACCGCTCTCCTCGCTGCAACTCCGCTGTCTGCTCACGCGCCGGCTCC 310
Query 298 AACAGC-TGCGGCACATGCTTTTCTCCTCCGAGACCTGGCTGTAGTAACAACACTTGCGG 356
| | || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 311 ATC-GCCTGCGGCACATGCTTCTCTCCTCCGAGACCTGGCTGTAGTAACAACACTTGCGG 369
Query 357 CGGCATT-CCAGATAACACCGTCACCGGTACCG-CTACTTCCGGCGAATTTGCTTTAGAC 414
|| | || ||||||||| || ||||||| | | | || || ||||||||||||||||||
Sbjct 370 CG-CTTTTCCAGATAACTCCATCACCGG-ATGGGCAACCTCGGGCGAATTTGCTTTAGAC 427
Query 415 GTTGTGTCGATCCAGTCCACTAACGGATCCAATCCGGGTCGGGTCGTTAAAATCCCCAA- 473
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 428 GTTGTGTCTATCCAGTCCACTAACGGATCCAATCCGGGTCGGTTCGTTAAAATCCCCAAT 487
Query 474 CTTGATCTTC-GATTGTGGAGCAACGTTTCTTCTTAAAGGACTTGCTAGTGGAACCGTTG 532
|| || ||| | ||| ||| |||||| ||||||||||||||| |||| ||| ||||||
Sbjct 488 CTA-ATATTCAG-TTGCGGATCAACGTCTCTTCTTAAAGGACTCGCTAAAGGAGCCGTTG 545
Query 533 GTATGGCCGGAATGGGACGTCACAACATCGGTTTACCGTCGCAGTTCGCCGCCGCGTTTA 592
||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 546 GTATGGCTGGAATGGGACGTCACAACATCGGCTTACCGTTGCAGTTCGCCGCCGCGTTTA 605
Query 593 GCTTCAACCGCAAATTCGCCGTGTGTCTAACTTCCGGCAGAGGAGTCGCCTTCTTCGGCA 652
|||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 606 GCTTCAACCGCAAATTCGCCGTGTGTCTTACTTCCGGTAGAGGCGTCGCCTTCTTCGGCA 665
Query 653 ACGGACCTTACGTTTTCCTCCCCGGAATCCAGATCTCA-GGTCTCCAAACGACGCCGCTT 711
||||||||||||||||||||||||| |||||||||||| || || |||| ||| ||||||
Sbjct 666 ACGGACCTTACGTTTTCCTCCCCGGGATCCAGATCTCAAGG-CTTCAAAAGACACCGCTT 724
Query 712 CTCATTAATCC-GGTGAGCACTGCTTCTGCGTTTTCACAAGGTGAGAAATC-CTCAGAGT 769
||||| ||||| || || ||||| || || ||||||| |||| ||||| || | | ||||
Sbjct 725 CTCATCAATCCAGG-GACCACTGTTTTTGAGTTTTCAAAAGGCGAGAAGTCGC-CGGAGT 782
Query 770 ACTTCATCGGCGTGACGGCGATTAAAATCGTCGAGAAAACAGTTCCGATCAATCCAACGC 829
| || |||||||||||||||||||| ||||||||||||||| |||| ||| |||||||||
Sbjct 783 ATTTTATCGGCGTGACGGCGATTAAGATCGTCGAGAAAACACTTCCAATCGATCCAACGC 842
Query 830 TTTTGAAAATCAACGCAAGTACCGGATTCGGAGGAACCAAAATCAGCTCCGTGAATCCGT 889
||||||| || ||||||||||| ||| | ||||||||||||||||||||||| ||||| |
Sbjct 843 TTTTGAAGATAAACGCAAGTACTGGAATAGGAGGAACCAAAATCAGCTCCGTCAATCCTT 902
Query 890 ACACGGTGTTGGAGTCATCGATCTACAATGCTTTTACGTCGGAGTTCGTCAAACAAGCAG 949
|||||||||||||||||||||||||||| ||||||||||||||||| | | ||||||||
Sbjct 903 ACACGGTGTTGGAGTCATCGATCTACAAAGCTTTTACGTCGGAGTTTATTAGACAAGCAG 962
Query 950 CGGCGAGGAACATCACGAGAGTAGCGTCGGTGAAACCGTTCAGCGCGTGTTTCAGCACGC 1009
||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 963 CGGCGAGGAGCATCAAGAGAGTAGCGTCGGTGAAACCGTTCGGCGCGTGTTTCAGCACGA 1022
Query 1010 AGAACGTCGGCGTCACGCGCCTGGGATACGCCGTGCCGGAGATTCAGCTTGTGCTTCATA 1069
||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 1023 AGAACGTTGGCGTCACGCGCCTAGGATACGCCGTACCGGAGATTCAGCTCGTGCTTCATA 1082
Query 1070 GCAACGACGTCGTCTGGAGGATCTTTGGAGCTAACTCGATGGTGAGTGTCAGTGATGACG 1129
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GCAAAGACGTCGTTTGGAGAATCTTTGGAGCTAACTCGATGGTGAGTGTCAGTGATGACG 1142
Query 1130 TCATCTGCTTAGGTTTCGTTGACGGAGGAGTCAACGCAAGAACCTCTGTGGTGATCGGAG 1189
||||||| || |||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 1143 TCATCTGTTTGGGTTTCGTTGACGGAGGAGTCAACCCAGGAGCCTCTGTGGTGATCGGAG 1202
Query 1190 GGTTTCAGTTGGAGGATAATTTGATCGAATTTGATTTGGCGAGTAACAGATTTGGGTTTA 1249
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1203 GGTTCCAGTTGGAGGATAATTTGATCGAATTTGATTTGGCGAGTAACAAATTTGGGTTTA 1262
Query 1250 GTTCCACGTTATTGGGCCGTCGCACTAACTGCGCCAACTTCAATTTCACTTCCACTGCTT 1309
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1263 GTTCCACGTTATTGGGCCGTCAAACTAACTGCGCCAACTTTAATTTCACTTCCACTGCTT 1322
Query 1310 GATTAAATT 1318
|||||||||
Sbjct 1323 GATTAAATT 1331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69678356460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5