BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470303
Length=1078
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03250.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1458 0.0
> AT1G03250.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages. | chr1:793359-795376
REVERSE LENGTH=1190
Length=1190
Score = 1458 bits (789), Expect = 0.0
Identities = 938/1006 (93%), Gaps = 26/1006 (3%)
Strand=Plus/Plus
Query 92 CGGTTTTCTGTTCAAATCAGCCGATTTCCTCACATTTAATTGTTGAATCATGGCGGCTAC 151
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 169 CGGTTTTCTGTTCAAATCAGCGGATTTCCTCACATTTAATTGTTCAATCATGGCGGCTAC 228
Query 152 CAATGTCATGCGGCGAGACGAGAGCCTTCTTATTGATCCCCAAAGAGGAGATACTAGTGT 211
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 229 CAATGTCATGCGGCGAGACGAGAGCCTTCTTATTGATCCCCAAAGAGGAGATACAAGTGT 288
Query 212 TTCTCGTGGCCTCTCGCTTGAGAAGAAAATTGAGGCCCTTGAGAGCCTGGCGGGACAAGT 271
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 289 TTCTCGTGGCCTCTCGCTTGAGAAGAAAATTGAGGCCCTTGAGAGCCTGGCCGGACAAGT 348
Query 272 TAGTAACAGGCGATCTCGGAGATGGTTAAATGATCGTATTCTGATGGAACTTGTTCCTCG 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TAGTAACAGGCGATCTCGGAGATGGTTAAATGATCGTATTCTGATGGAACTTGTTCCTCG 408
Query 332 TTTGGATGCCCAAGAAATCAGAGGCTTGTTTGCTCCACCACCATGGGGCGATGATGTCCC 391
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 409 TTTGGATGCCCAAGAAATCAGAGGCTTGTTTGCTCCACCACCGTGGGGTGATGATGTCCC 468
Query 392 ACCCTCAGCCTTTTCTTTGACTAATGTTGGAGAATGGGACAAATTCAGAAACATAGATAT 451
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 469 ACCCTCAGCATTTTCTTTGACTAATGTTGGAGAATGGGACAAATTTAGAAACATAGACAT 528
Query 452 GGAC-------AA--G-G--------AGGCCAACATCATGGATTCCTTGAACAGGTCATC 493
|||| || | | ||||||||||||||||||||||||| ||||||||
Sbjct 529 GGACAAGGAGGAATTGTGTTTTTTTCAGGCCAACATCATGGATTCCTTGAATAGGTCATC 588
Query 494 CGTAAGGCAGAAAGGTCGTGTGGATGCTGACAAAACCGCTGTCTTAAACGCTTGGCGGAG 553
|||||||||||||||| | ||||| | ||| |||| |||||||||||| |||||| | ||
Sbjct 589 CGTAAGGCAGAAAGGTAGCGTGGACGGTGATAAAATCGCTGTCTTAAATGCTTGGAGAAG 648
Query 554 AATAGATTGTAGGACAAGAGAGGCTCTTCGACGTAGCTTTTTACCAGAACTAATCGAGGG 613
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 649 AATAGATTGTAGGACAAGAGATGCTCTTCGACGTAGCTTTTTACCAGAACTAATCGAGGG 708
Query 614 ATATGAGAACTGTTTAAGTCAATTTATCGAGGAAGGTGGTGAAGGAGATGTTCTCGATCT 673
|||||||| |||| ||||||| || ||||||||||||||||||||||||||||| || ||
Sbjct 709 ATATGAGAGCTGTATAAGTCACTTCATCGAGGAAGGTGGTGAAGGAGATGTTCTTGAGCT 768
Query 674 CAATGTTCAAGACCCATTCCATAGATTGCTTTTGCATGGTGTTTGTGAGTACCACAATTT 733
||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 769 CAAGGTTCAAGACCCATTCCATAGATTGCTTTTACACGGTGTTTGTGAGTATCACAATTT 828
Query 734 GGTATCAACAACTGCAACAGAACAGATAGGAAGGATAGCAATGAAGACAACGAGCATCAA 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 GGTATCAACAACTGCAACAGAACAGATAGGAAGGATAGCAATGAAGACAACGAGCATCAA 888
Query 794 ATGGAAGAAGAGTGGCGATTCAGGGGAGAAACCAAGCATCAGCCTCGCGCATTTCCTTAG 853
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 889 ATGGAAGAAGAGTGGCGATTCAGGGGAGAAACCAAGCATCAGCCTAGCGCATTTCCTTAG 948
Query 854 GATGTCAAAGGAAGGAGCTTGGTAACATCACATACACTCCTTTGTAGCTGTG-TAATTTT 912
||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||
Sbjct 949 GATGTCAAAGGAAGGAGCTTGGTAACAACACATACACTCCTTTGTAGCTGTGGT--TTTT 1006
Query 913 TATGAATAAAAAGCAGCGTCAATTTAAAGGGATATTTATGCAGCAAAAATATCTCAAGAc 972
|||||||| | || || |||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1007 TATGAATATCA-GC-GC--CAATTTAAAGGGCTATTTATGCAGCAAAAAGATCTCAAGAC 1062
Query 973 tctctctctctctctctGGCCTTTGCTACTTACCCCTATATGGCCTCTTGTAAGCTTGTA 1032
||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1063 TCTCTCTCTCTCTCTTTGGCCTTTGCTACTTCCCCCTATGTGGCCTCTTGTAAGCTTGTA 1122
Query 1033 TTTGTATCCTCAAATGTATACGGTTTTATTATTAAAGAACGAAATA 1078
||||||||||||| | ||||||||||||| |||||||||||| |||
Sbjct 1123 TTTGTATCCTCAATT-TATACGGTTTTATGATTAAAGAACGAGATA 1167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52810973340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5