BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470307
Length=1840
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03290.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2748 0.0
AT4G02880.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 688 0.0
> AT1G03290.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G02880.2);
Has 13587 Blast hits to 10183 proteins in 1114 species: Archae
- 257; Bacteria - 2402; Metazoa - 5637; Fungi - 960; Plants
- 675; Viruses - 54; Other Eukaryotes - 3602 (source: NCBI
BLink). | chr1:807396-810690 FORWARD LENGTH=1860
Length=1860
Score = 2748 bits (1488), Expect = 0.0
Identities = 1728/1844 (94%), Gaps = 15/1844 (1%)
Strand=Plus/Plus
Query 1 TCCTCACAGCTCTCGCTTCTGATCTCTTACTTGCCTCAAAAATCGAATATTTGCTAAAGG 60
||||||||||||||||||||||||||||||||| | || |||||||| |||| ||||||
Sbjct 28 TCCTCACAGCTCTCGCTTCTGATCTCTTACTTG-CACAGAAATCGAAAATTTTCTAAAGC 86
Query 61 TTTTGTTGTATTCTCTTCGTTTTTCTCTGAGTGTATTAACTTTCACTCATGGGTTTCGGT 120
||||||| ||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 87 TTTTGTTCTATTCTCTTCGTTTTCCTCTGAGTTTATTAACTTTCACTGATGGGTTTCGGT 146
Query 121 TCTGTTTATCGATCTCTAACGGAAATCTTTCCTCAGATTGATGCACGAATTTTGAGAGCT 180
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 147 TCTGTTTATCGATCTCTAACGGAAATATTTCCTCAGATTGATGCACGAATTTTGAGGGCT 206
Query 181 GTTGCAATCGAACACCCCAAGGATGCTGATGAAGCTGCTGCTGTGGTTCTTTCAGAGATT 240
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 GTTGCAATAGAACACCCAAAGGATGCTGATGAAGCTGCTGCTGTGGTTCTTTCAGAGATT 266
Query 241 ATTCCTTCATTTTCCTCAAATTTGTCCCATAATCTTACTCAATCTTCCAACAAGTCATCT 300
|||||||| |||||||||||||||| ||||||| ||||||||||||| |||||||||||
Sbjct 267 ATTCCTTCCTTTTCCTCAAATTTGTTCCATAATTTTACTCAATCTTCGTACAAGTCATCT 326
Query 301 GGAAGTATTTCAGACCGCGAAGTAGAACGTGGTTTGGAAGATGTTGTTTCTAGGTGCCGC 360
||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 327 GGAAGCATTTCAGAGCGCGAAGTAGAACATGGTTTGGAAGATGTTGCTTCTAGGTGCCGC 386
Query 361 CCTTTTCTTGGAGCTTCTGGTTCAAAGCCCAGCActtcttcttcttgttcttcttcttct 420
|||||||||||||||||||| |||||| |||||| ||||||| |||||||||||||
Sbjct 387 CCTTTTCTTGGAGCTTCTGGCTCAAAGGCCAGCA---CTTCTTC---TTCTTCTTCTTCT 440
Query 421 tcAGAAACTCTTCCCTTGGTTGTTGTCCGTGACCACAATTCCCGTGCTCTAAGTACTGAT 480
||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 441 TCAGAAACTCTTCCCCTGGTTGTTACCCGTGACCACAATACCCGTGCTCTAAGTACTGAT 500
Query 481 CTGGTCTCAAATATGAACGAGCTAACAAATTTGCAACCAAATGTCGGTCTTGATGTTTGC 540
|||||||||| |||||||||||||||| |||||||||||||| | || ||||||||||
Sbjct 501 TTGGTCTCAAACATGAACGAGCTAACAACCTTGCAACCAAATGTTGATCCTGATGTTTGC 560
Query 541 CATAAAGACCTGGAAAGTGAGGAAGTTCAATCTTTGAAAAAGGCTCGTGGAAAAGAGCAC 600
||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| |
Sbjct 561 CATAAAGACCTTGAAAGTGAGGAAATTCAATCAGTGAAAAAGGCTCGTGGAAAAGAGAAT 620
Query 601 GAAAACTATGATCTCTTTGGTAGGTGTTTTGATGTTAAGAGCAATGCAAAACTTGGCTTG 660
| |||||||||| | |||||||||||||||||||||| ||||||||||||| |||| |||
Sbjct 621 GGAAACTATGATTTATTTGGTAGGTGTTTTGATGTTACGAGCAATGCAAAAATTGGTTTG 680
Query 661 CATGTGCCAGATGATGATATCGCCTCAGTCGTCTCTGC-CATTTCCCTAGATAATATTAA 719
|||||||||| |||||||| ||||||||||||||| | | |||||||||||||| ||||
Sbjct 681 GATGTGCCAGAGGATGATATTGCCTCAGTCGTCTCT-CTCTTTTCCCTAGATAATGTTAA 739
Query 720 ATTGACTAGCGGTTTTTGGGAAGATCTTTGTTTTGGTATGACATGGAATCAAGCAGATAA 779
|||| ||||| |||||||||||||||| |||||| ||| ||||||||||||||||| ||
Sbjct 740 ATTGGCTAGCAATTTTTGGGAAGATCTTGGTTTTGATATCACATGGAATCAAGCAGAAAA 799
Query 780 TGCTGTATCGAAGCTGGTCGATTCAACTCCTGGGGATACTACGACAACTACACAGCAGGG 839
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 800 TGCTGTATCGAAGCTGGTCGATTCAACTCCTGGGGATACTATGACAACTACACAGCAAGG 859
Query 840 TTCATGTTTTGAAGTTGACTC-TGGGAGTACAAATCTTGTGGACGAGACTTCAAATCATT 898
||||||||||||||||| | | ||||||||||||||||||||||||||||||||||| ||
Sbjct 860 TTCATGTTTTGAAGTTGGC-CATGGGAGTACAAATCTTGTGGACGAGACTTCAAATCGTT 918
Query 899 CATTGGTCTCTGAAAATGGTGATACTGAAATAGGTGATGCTTTTAGCACATCAACCCATG 958
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 919 CTTTGTTCTCTGAAAATGGTGATACTGAAATAGGTGATGCTTTTAGCACATCAACGCATG 978
Query 959 TATGCAGCGTTGATCACCTTGAAGAGATTATTGAGGATGCCAAAAGTAACAAGAAAACCT 1018
|||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||| ||
Sbjct 979 TATGCAGCGTTGATCAACTTGAAGATATTATTGAAGATGCCAAAAGTAATAAGAAAAACT 1038
Query 1019 TGTTTACTGAGATGGAAACGGTTACGAATTTAATGAGAGAAGTTGAACTTCAA-GAGAAG 1077
|| |||||||||||||||||||||| ||| |||||||||||||||||| | || |||||
Sbjct 1039 TGCTTACTGAGATGGAAACGGTTACAAATATAATGAGAGAAGTTGAAC-TAAAGGAGAAA 1097
Query 1078 GATGCAGAGAAGTCAAAGGAGGAAGCTGCTAGGGGAGGTTTAGATACTCTTCAAAAGGTC 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 GATGCAGAGAAGTCAAAGGAGGAAGCTGCTAGGGGAGGTTTAGATACTCTTCAAAAGGTT 1157
Query 1138 GAGGAGCTCAAGAAGATGCTGGAACATGCAAAGGAAGCAAATGACATGCATGCTGGAGAA 1197
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1158 GAGGAGCTCAAGAAGATGCTGGAACATGCGAAGGAAGCAAATGACATGCATGCTGGAGAA 1217
Query 1198 GTATATGGAGAGAAGTCAATTTTGGCCACTGAAGTAAAAGAGCTTGAAAACCGGTTGCTC 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 GTATATGGAGAGAAGTCAATTTTGGCCACTGAAGTAAAAGAGCTTGAAAACCGGTTGCTC 1277
Query 1258 AACTTATCAGAAGAACGAAACAAATCTCTTGCTATCCTTGATGAGATGCGAGGAAGTCTC 1317
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 AACTTATCAGAAGAAAGAAACAAATCTCTTGCTATCCTTGATGAGATGCGAGGAAGTCTC 1337
Query 1318 GAAATAAGACTAGC-GACAGCACTTGAGATGAAAAAGACTGCTGAGCAAGAAAAGAAAAA 1376
|||||||||||||| | ||||||| ||| ||||||||||||||||| ||||||||||| |
Sbjct 1338 GAAATAAGACTAGCAG-CAGCACTGGAGTTGAAAAAGACTGCTGAGAAAGAAAAGAAAGA 1396
Query 1377 CAAAGAAGATTCTGCACTTAAGGCACTTGCTGAGCAAGAAGCCAACATGGAGAAAGTGGT 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 CAAAGAAGATTCTGCACTTAAGGCACTTGCTGAGCAAGAAGCCAACATGGAGAAAGTGGT 1456
Query 1437 CCAAGAATCAAAGCTTCTACAGCAGGAGGCAGAGGAAAATTCCAAGCTTCGAGAGTTTCT 1496
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1457 CCAAGAATCGAAGCTTCTACAGCAGGAGGCAGAGGAAAATTCCAAGCTTCGAGATTTTCT 1516
Query 1497 TATGGATCGTGGTCAGATTGTTGATTCCTTACAAGGAGAAATTTCTGTGATCTGTCAAGA 1556
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1517 TATGGATCGTGGTCAGATTGTTGATACCTTACAAGGAGAAATTTCTGTGATCTGTCAAGA 1576
Query 1557 TGTGAAGCTGTTGAAAGAGAAATTCGAAAACCGAGTGCCATTAACCAAATCAATCTCCTC 1616
|||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 1577 TGTGAAGCTGTTGAAAGAAAAATTTGAAAACCGAGTGCCTTTAACCAAATCGATCTCCTC 1636
Query 1617 AAGCCTCACTAGTTCATGCGGATCATCTATGAGAAGCTTGGTGCTCGAGAATCCTTCTGA 1676
|||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1637 AAGCTTCACTAGTTCATGCGGATCATCTATGAAAAGCTTGGTGCTCGAGAACCCTTCTGA 1696
Query 1677 GCGATTGAATGGAGTGCCTGAAACCTCAAGCAACAAGAACTTCCCAGAAGCAGCAGCTTC 1736
|||||||||||||||| |||||||||||| |||||| || |||||||||||||||||||
Sbjct 1697 GCGATTGAATGGAGTGACTGAAACCTCAAACAACAACAAGTTCCCAGAAGCAGCAGCTTT 1756
Query 1737 CTTCATGAACAAAGAGAAAGATGATTGTAGAGATCTTCTTGAAGATGGTTGGGACATCTT 1796
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1757 CTTCATGAACAAAGAGAAAGATGATTGTAGAGATCTTCTTGAAGATGGATGGGACATCTT 1816
Query 1797 CGACAAGGAGACCGAACAAGTTGTTTGGTACTGAAGAATAAAGT 1840
|||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1817 TGACAAGGAGACCGAACAAGTTGTTTGGTACTGAAGAATGAAGT 1860
> AT4G02880.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03290.2).
| chr4:1274465-1278718 FORWARD LENGTH=2702
Length=2702
Score = 688 bits (372), Expect = 0.0
Identities = 593/696 (85%), Gaps = 30/696 (4%)
Strand=Plus/Plus
Query 948 ATCAACCCATGTATGCAGCGTTGAT-CACCTTGAAGAGATTATTGAGGATGCCAAAAGTA 1006
||||||||| | ||||| | || | ||||||||| |||| ||||| |||||||||||||
Sbjct 1036 ATCAACCCAGGGATGCAAC-ATGGTCCACCTTGAACAGATCATTGAAGATGCCAAAAGTA 1094
Query 1007 ACAAGAAAACCTTGTTTACTGAGATGGAAACGGTTACGAATTTAATGAGAGAAGTTGAAC 1066
|||||| ||||||||| |||| |||||| || ||| |||| | ||||||||||||||||
Sbjct 1095 ACAAGAGAACCTTGTTCACTGTGATGGAGTCGATTATGAATCTGATGAGAGAAGTTGAAC 1154
Query 1067 TTCAAGAGAAGGATGCAGAGAAGTCAAAGGAGGAAGCT-GCTAGGGGAGG-TTTAGATAC 1124
||||||||||||| ||||| ||| ||||||| || ||| | || ||||| ||| |||||
Sbjct 1155 TTCAAGAGAAGGAGGCAGAAAAGGCAAAGGAAGATGCTAG-TATAGGAGGCTTT-GATAC 1212
Query 1125 TCTTCAAAAGGTCGAGGAGCTCAAGAAGATGCTGGAACATGCAAAGGAAGCAAATGACAT 1184
|||| | ||||| |||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 1213 TCTTGACAAGGTGGAGGAGCTGAAGAAGATGCTGGAACATGCGAAGGAGGCAAATGACAT 1272
Query 1185 G-CATGCTGGAGAAGTATATGGAGAGAAGTCAATTTTGGCCACTGAAGTAAAAGAGCTTG 1243
| | |||||||||||| ||||| |||| |||||||||| |||||||||| || |||||||
Sbjct 1273 GGC-TGCTGGAGAAGTTTATGGGGAGAGGTCAATTTTGACCACTGAAGTTAATGAGCTTG 1331
Query 1244 AAAACCGGTTGCTCAACTTATCAGAAGAACGAAACAAATCTCT-TGCTATCCTTGATGAG 1302
|||| || ||| ||| |||||||||||||||| |||| ||||| | || | |||||||||
Sbjct 1332 AAAATCGCTTGATCAGCTTATCAGAAGAACGAGACAACTCTCTCT-CTGTTCTTGATGAG 1390
Query 1303 ATGCGAGGA-AGTCTCGAAATAAGACTAGCGACAGCACTTGAG-ATGAAAAA-GACTGCT 1359
||||| | | | ||| |||||||||||||||||||| ||| | || ||||| | |||||
Sbjct 1391 ATGCGTGTAGA-TCTTGAAATAAGACTAGCGACAGCT-TTGGGGATAAAAAATG-CTGCT 1447
Query 1360 GAGCAAGAAAAGAAA--AACAAAGAAGATTCTGCACTTAAGGCACTTGCTGAGCAAGAAG 1417
||||||||||| | | || ||||||| ||||||| |||||| ||||||| |||||||
Sbjct 1448 GAGCAAGAAAA-ACAGGAA-AAAGAAGGGTCTGCACGCAAGGCATTTGCTGAACAAGAAG 1505
Query 1418 CCAACATGGAGAAAGTGGTCCAAGAATCAAAGCTTCTACAGCAGGAGGCAGAGGAAAATT 1477
| | |||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1506 CGATCATGGAGAGAGTTGTCCAAGAATCCAAGCTTCTACAGCAGGAGGCAGAGGAAAACT 1565
Query 1478 CCAAGCTTCGAGAGTTTCTTATGGATCGTGGTCAGA-TTGTTGATTCCTTACAAGGAGAA 1536
||||||| |||||||| |||||||||| ||||| || |||||||||||||||||||||||
Sbjct 1566 CCAAGCTGCGAGAGTTCCTTATGGATCATGGTC-GAATTGTTGATTCCTTACAAGGAGAA 1624
Query 1537 ATTTCTGTGATCTGTCAAGATGT--GA-AGCTGTTGAAAGAGAAATTCGAAAACCGAGTG 1593
|| ||||||||||||||||| | || | || | ||||||||||||||| |||||||||
Sbjct 1625 ATCTCTGTGATCTGTCAAGACATCCGACA-CT-T-GAAAGAGAAATTCGACAACCGAGTG 1681
Query 1594 CCATTAA-CCAAATCAATCTCCTCAAGCCTCACTAG 1628
||||| | |||| |||||||||||||||| |||||
Sbjct 1682 CCATTGAGCCAA-TCAATCTCCTCAAGCCAGACTAG 1716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91063788630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5