BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470308
Length=2768
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03310.2 | Symbols: ATISA2, ISA2, DBE1, BE2 | debranching en... 4167 0.0
> AT1G03310.2 | Symbols: ATISA2, ISA2, DBE1, BE2 | debranching
enzyme 1 | chr1:813486-816749 FORWARD LENGTH=2940
Length=2940
Score = 4167 bits (2256), Expect = 0.0
Identities = 2573/2728 (94%), Gaps = 13/2728 (0%)
Strand=Plus/Plus
Query 50 GGCATCACTAGAACATGGAAGTTTCCTGCTGCAAGGTTTTTTACTGGT---AAGAACAAG 106
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 217 GGCATCACTAGAACATGGAAGTTTCCTTCTGCAAGGCTTTTTACTGGTAGGAAGAACAAG 276
Query 107 ATTAAACTTGGATCTGAGACACTGATATTTACAAGAAAACGTTTCATGGGGGATTTGGTT 166
|||||||||||||| |||||||| || |||||| |||||||||||||||| |||||||||
Sbjct 277 ATTAAACTTGGATCCGAGACACTAATGTTTACACGAAAACGTTTCATGGGTGATTTGGTT 336
Query 167 ACTAGCGCGTTACAAAGTTATCAGTTGGGTAAGATATGTGCTTCGAAGACTTCCATCGAG 226
|| |||||||| |||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 337 ACAAGCGCGTTGCAAAGTTATCAGTTTAGTAAGATATGTGCTTCAAAGACTTCCATCGAG 396
Query 227 CTGAGGGAGGCATTGTCTACTAGAAGAGCTCAGGTTGATGACCTGAAGAAGGTAACATCA 286
||||| ||||||||||||| |||||||||| ||| |||||||||||||||||||||||||
Sbjct 397 CTGAGAGAGGCATTGTCTAGTAGAAGAGCTGAGGCTGATGACCTGAAGAAGGTAACATCA 456
Query 287 TATTCATTCAGGACAAAATCTGGTGCTCTTGTTAAAGTTAGAGTTGAAAAGAAGAGAGAA 346
|||||||||||||||||| | |||||||| |||||||| | |||||||||||||||||||
Sbjct 457 TATTCATTCAGGACAAAAGCAGGTGCTCTGGTTAAAGTCAAAGTTGAAAAGAAGAGAGAA 516
Query 347 AAGTACAGCATTATGGTTTATGTCTCATCTTTGGAACTAAGTGGTGATGGCAAGAGTAGA 406
|||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 517 AAGTACAGCATTTTGGTTTATGTCTCATCTTTGGAACTTAGTGGTGATGACAAGAGTAGG 576
Query 407 CTGGTGATGGTTTGGGGTGTCTACAGGTCTGATTCTTCGTGTTTCTTGCCTCTGGATTTC 466
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 577 CTGGTGATGGTTTGGGGTGTCTACAGGTCTGATTCTTCGTGTTTTTTGCCTCTGGATTTC 636
Query 467 GAAAACTCTTCCCAAGACTCACAAACCCACACAACAGAAACTCCATTTGTGAAAAGCTCC 526
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 637 GAAAACTCTTCCCAAGACTCACAAACCCACACAACAGAAACTACATTTGTGAAAAGCTCC 696
Query 527 TTCTCTGAGTTAATGCTAGGGCTCGAATTTGATGGGAAAGAATCTCCTTTCTACCTATCA 586
|| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 697 TTGTCTGAGTTAATGCTAGGGCTAGAATTTGATGGGAAAGAATCTCCTTTCTACTTATCA 756
Query 587 TTTCACCTGAAGTTAGTGTCAGGAAGAGATCCGGACGGTCAAGAAATGCTGACACACAGA 646
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 757 TTTCACCTGAAGTTAGTGTCAGGTAGAGATCCGGACGGTCAAGAAATGCTGACTCACAGG 816
Query 647 GACACTGACTTCTGTATCCCGGTTGGTTTTACTGCTGGTCATCCATTGCCGTTAGGCCTT 706
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 817 GACACTGACTTCTGTATCCCGGTTGGTTTTACTGCTGGTCATCCATTGCCGCTAGGCCTT 876
Query 707 TCTTCTGGGCCAGATGATGACTCTTGGAATTTTGCCTTCTTTTCAAGAAACTCAACGAAC 766
||||| |||||||||||||| |||||||||||| | ||||||||||||| ||||||||||
Sbjct 877 TCTTCCGGGCCAGATGATGATTCTTGGAATTTTTCGTTCTTTTCAAGAAGCTCAACGAAC 936
Query 767 GTGGTTTTATGCTTGTATGATGATACCACAACCGATAAACCTGCTTTAGAGCTTGATCTT 826
||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||
Sbjct 937 GTGGTTTTATGCTTGTATGATGATAGCACAACAGATAAACCTGCTTTAGAACTTGATCTT 996
Query 827 GATCCTTATGTCAACCGAACAGGTGATGTTTGGCATGCTTCAATTGACAATACATGGGAT 886
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 997 GATCCTTATGTCAACCGAACAGGTGATGTTTGGCATGCTTCAGTTGACAATACATGGGAT 1056
Query 887 TTTGTGAGATATGGCTACCGTTGCAAGGAGACGGCTCACTCGGAAGAAGACGTCGATGTT 946
|||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||
Sbjct 1057 TTTGTGAGATATGGCTACCGTTGCAAGGAGACAGCTCACTCTAAAGAAGATGTCGATGTT 1116
Query 947 GAAGCTGAGCCAATTGTTTTGGATCCATATGCCACAGTCATTGGTAAATCTGTCTCTCAG 1006
|||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1117 GAAGGTGAGCCAATTGTCTTGGATCCATATGCCACAGTCGTTGGTAAATCTGTCTCTCAG 1176
Query 1007 AAATTTCTTGGAAGTTTACT-TAAGAACCCTTCTTTTGATTGGGGAGAAGATGTGTCTCC 1065
|||| ||||||||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 1177 AAATATCTTGGAAGTTTA-TCTAAGAGTCCTTCTTTTGATTGGGGAGAAGATGTGTCTCC 1235
Query 1066 GAATATACCTCTGGAGAAACTTATTGTTTACCGGTTGAATGTGAAGGGTTTTACACAACA 1125
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1236 GAACATACCTCTGGAGAAACTTCTTGTTTACCGGTTGAATGTGAAGGGTTTTACACAACA 1295
Query 1126 CAAATCCAGCAAGTTGCCTAGTAACGTAGCAGGGACTTTTTCTGGTGTAGATGAGAAAGT 1185
|| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1296 CAGATCCAGCAAGTTGCCTAGTAACGTAGCAGGGACATTTTCTGGTGTAGCTGAGAAAGT 1355
Query 1186 TAGCCATCTGAAAACCCTTGGAGTCAACGGTGTTCTCTTGGAGCCAATATTTTCGTTCTC 1245
||||||| |||||||||||||| ||||| |||||| |||||||||||||| || |||||
Sbjct 1356 TAGCCATTTGAAAACCCTTGGAACCAACGCTGTTCTTTTGGAGCCAATATTCTCATTCTC 1415
Query 1246 CGAGCAAAAAGGTCCTTATTTTCCATTTCATTTCTTTTCACCAATGGACATATATGGACC 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 CGAGCAAAAAGGTCCTTATTTTCCATTTCATTTCTTTTCACCAATGGACATATATGGACC 1475
Query 1306 TTCCAATAGCCTTGAATCCGCGGTTAACTCAATGAAAGAGATGGTGAAGAAATTGCACAG 1365
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1476 TTCCAATAGCCTTGAATCCGCAGTTAACTCAATGAAAGTGATGGTGAAGAAATTGCACAG 1535
Query 1366 TCAGGGAATAGAGGTACTTTTGGAAGTAGTTTTTACACATACCACTGATTCTGGAGCTCT 1425
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1536 TGAGGGAATAGAGGTACTTTTGGAAGTAGTTTTTACACATACTGCTGATTCTGGAGCTCT 1595
Query 1426 TCATGGAATTGATGACAGTTGCTATTATTACAAGGGAAGGGCCAATGATCTAGATTATAA 1485
|| ||||||||||||||||| |||||| ||||||||||| |||||||||||||||| |||
Sbjct 1596 TCGTGGAATTGATGACAGTTCCTATTACTACAAGGGAAGAGCCAATGATCTAGATTCTAA 1655
Query 1486 AAGTTACTTGAACTGTAACTATCCTGTTGTTCAGCAGTTGATTTTGGAGAGCTTGCGTTA 1545
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1656 AAGTTACTTGAACTGTAACTATCCTGTTGTTCAGCAGTTGGTATTGGAGAGCTTGCGTTA 1715
Query 1546 TTGGGTTACCGAGTTTCATGTAGATGGTTTTTGTTTCATAAATGCTTCGTCTCTCTTGAG 1605
|||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 1716 TTGGGTAACCGAGTTTCATGTAGATGGATTTTGTTTTATAAATGCTTCATCTCTCTTGAG 1775
Query 1606 AGGCGTTCACGGTGAACAGCTCTCTCGTCCTCCCTTGGTTGAAGCAATAACTTTCGATCC 1665
||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||
Sbjct 1776 AGGCGTTCACGGTGAACAGCTCTCTCGTCCTCCTTTGGTTGAAGCAATAGCTTTTGATCC 1835
Query 1666 ACTTCTTGCGGAAACCAAACTAATTGCTGATTGTTGGGATCCACTTGAAATGATGCCAAA 1725
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1836 ACTTCTTGCGGAGACCAAACTAATAGCTGATTGCTGGGATCCACTTGAAATGATGCCAAA 1895
Query 1726 AGAAGTACGGTTCCCGCATTGGAAGCGATGGGCAGAACTCAACACAAGATATTGTCGAAA 1785
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1896 AGAAGTACGGTTCCCACATTGGAAGCGATGGGCAGAACTCAACACAAGATATTGTCGAAA 1955
Query 1786 TGTACGAAATTTTCTGAGGGGAAGAGGCGTTCTAAGCGATCTGGCTACAAGAATTTGTGG 1845
|||| |||||||| | ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1956 TGTAAGAAATTTTTTAAGGGGAAGAGGCGTTCTTAGTGATCTGGCTACAAGAATTTGTGG 2015
Query 1846 AAGTGGTGACATATTTACCGATGGAAGAGGTCCTGCTTTCTCCTTTAACTACATTTCAAG 1905
|||||||||| |||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 2016 AAGTGGTGACGTATTTACCGATGGAAGAGGTCCGGCCTTCTCCTTCAACTACATTTCAAG 2075
Query 1906 AAACTCAGGACTCTCTCTTGTTGACTTAGTCAGTTTCAGTAACCCTGAGATAGCTTCAGA 1965
||||||||||||||| ||||||||| |||||||||||||| ||||||| ||||||||||
Sbjct 2076 AAACTCAGGACTCTCGCTTGTTGACATAGTCAGTTTCAGTGGCCCTGAGCTAGCTTCAGA 2135
Query 1966 GCTAAGTTGGAATTGTGGGGAAGAAGGAGCAACGAATAAATCAGCTGTTCTTCAAAGAAG 2025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2136 GCTAAGTTGGAATTGTGGGGAAGAAGGAGCAACGAATAAATCAGCTGTTCTTCAAAGAAG 2195
Query 2026 GCTAAAACAAATCCGCAACTTCTTGTTTATACAGTACATATCACTCGGAATTCCAGTGCT 2085
|||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||
Sbjct 2196 GCTAAAACAAATCCGCAATTTCTTGTTTATACAGTACATATCACTTGGAGTTCCAGTGCT 2255
Query 2086 TAACATGGGAGATGAATGTGGAATCTCGACAAAGGGCTCGCCTTTGTTGGAATCACGGAA 2145
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2256 TAATATGGGAGATGAATGTGGAATCTCGACAAGGGGCTCGCCTTTGTTGGAATCACGGAA 2315
Query 2146 ACCTTTTGATTGGAACTTGCTAGCTTCGGCTTTCGGCACACAGATCACGCAATTCATCTC 2205
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2316 ACCTTTTGATTGGAACTTGCTAGCTTCGGCTTTCGGTACACAGATCACGCAATTTATCTC 2375
Query 2206 CTTCATGACTTCAGTAAGAGAAAGAAGAAGCGATGTGTTTCAGAGGAGAAACTTTTTGAA 2265
|||||||||||||||||||| ||||||||| ||||||||||| |||||| ||||||||||
Sbjct 2376 CTTCATGACTTCAGTAAGAGCAAGAAGAAGTGATGTGTTTCAAAGGAGAGACTTTTTGAA 2435
Query 2266 ACCTGAAAATATTGTTTGGTATGCAAATGACCAAACAACTCCAAAGTGGGAAGATCCTAC 2325
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2436 ACCTGAAAATATTGTTTGGTATGCAAATGACCAAACAACTCCAAAGTGGGAAGATCCTGC 2495
Query 2326 TTCTAAGTTTTTGGCATTGGAGATCAAATCAGAGTCAGAGGAAGAGGAAACTGCATCACT 2385
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 2496 TTCTAAGTTTTTGGCATTGGAGATCAAATCAGAGTCAGAGGAAGAGGAAACTGCGTCATT 2555
Query 2386 GGTTGAGCCAACTGAGCCAAAGAGCAATGATCTGTTCATCGGATTCAATGCAAGTGATCA 2445
|| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2556 GGCTGAGCCAAATGAGCCAAAGAGCAATGATCTGTTCATCGGATTCAATGCGAGTGATCA 2615
Query 2446 TCCGGAGAGTGTAATCTTACCTTCACTTCCCGATGGAAGCAAATGGAGACGATTGGTCGA 2505
||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2616 TCCTGAGAGTGTAGTCTTACCTTCACTTCCCGATGGAAGCAAATGGAGAAGATTGGTCGA 2675
Query 2506 CACAGCTCTTCCTTTCCCGGGGTTTTTCTCTGTCGAAGGAGAGACCGTTGTTGTAGCAGA 2565
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 2676 CACAGCTCTTCCTTTCCCGGGGTTTTTCTCTGTCGAAGGAGAAACCGTTGT---AGCAGA 2732
Query 2566 AGAACAGCTACAGCAACTGATTGTGTATGAGATGAAGCCGTACAGTTGTACCCTTTTTGA 2625
||||| | | ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2733 AGAACCGTTGCAGCAACTGGTTGTGTATGAGATGAAGCCGTACAGTTGTACCCTTTTTGA 2792
Query 2626 AACCATCAGTTCTACTGCTTAGAACTCAAGTTATGATCTTTGTATATGTTATTGTGTTGT 2685
|||||||| | |||| ||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 2793 AACCATCAATACTACCGCTTAGAACTCAAGTTATGATCTTTGTATATGTTACTGTTTTGT 2852
Query 2686 CATATTTCCAATAAGAATAT-T-CAATTAAATCAATGACTTCCACAATATCTGATATAGC 2743
| ||||||| ||||||||| | || |||||||||||| ||||||||||||| |||||
Sbjct 2853 TACATTTCCAGTAAGAATATATTCAGTTAAATCAATGATTTCCACAATATCTTATATATA 2912
Query 2744 -A-A-CATCACTTGTGCCTTTTGCTTGT 2768
| | |||||||| |||||||||||||
Sbjct 2913 TATAACATCACTTAAGCCTTTTGCTTGT 2940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137507590763
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5