BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470310
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03320.1 | Symbols: | unknown protein; Has 1038 Blast hits ... 664 0.0
> AT1G03320.1 | Symbols: | unknown protein; Has 1038 Blast hits
to 683 proteins in 112 species: Archae - 4; Bacteria - 14;
Metazoa - 318; Fungi - 117; Plants - 86; Viruses - 8; Other
Eukaryotes - 491 (source: NCBI BLink). | chr1:817027-817767
FORWARD LENGTH=663
Length=663
Score = 664 bits (359), Expect = 0.0
Identities = 572/666 (86%), Gaps = 49/666 (7%)
Strand=Plus/Plus
Query 1 ATGAACGACGGTTGCTGCTCAAAGTGTCAGGTTAAAGCAATaaagaagaagaactcgaag 60
|||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1 ATGAACGATGGTTGCTGCTCAAAGTGTCAGGTTAAAGCAACGAAGAAGAAGAAATCGAAG 60
Query 61 aaaaccgaagaagagtctcg-tgaagaggatgtgaaagaaaaacagaaagTTTCAGAGAG 119
|||| |||||| ||| || | |||||||||||||||| ||||||||||||||||| |||
Sbjct 61 AAAAACGAAGATGAGCCT-GATGAAGAGGATGTGAAACAAAAACAGAAAGTTTCAAAGAA 119
Query 120 TGAGAATCCGAAAAAAGATTCCAATGAGGAAAAAGGATCACATGAAAAAACAGATCAGAA 179
|||||||||||||||||||||||||| ||| ||||| || ||||| ||||
Sbjct 120 TGAGAATCCGAAAAAAGATTCCAATGGGGAGAAAGG-----AT-------CAGATGAGAA 167
Query 180 GGATAAGAAGAAGAAGAGCATCCTCACATGG---CAACACTCAAGTACAAAGAAAGAGAA 236
|||||||||||| |||| | |||||| |||| ||| ||||||||||||||||||||||
Sbjct 168 GGATAAGAAGAATAAGAACGTCCTCAGATGGCCACAAGACTCAAGTACAAAGAAAGAGAA 227
Query 237 GGATGTTGGTAAAAA---G---A---AGG--ACT--TGG--------T---AAGTGAGAA 272
|| || ||||||||| | | ||| | | ||| | ||| |||||
Sbjct 228 GGGTGATGGTAAAAACTTGTCAAGCGAGGAAAATGGTGGTAAAAACTTGCCAAGCGAGAA 287
Query 273 AAATGATGTTAA--C-CCGCCG---TGTTACACCGCTAAATCGATGATCTACCATGGTGG 326
||||| ||| || | |||||| |||||||||||| || ||||||| |||||||||||
Sbjct 288 AAATGGTGTGAACCCGCCGCCGCCTTGTTACACCGCTCAACCGATGATGTACCATGGTGG 347
Query 327 ACCCAATCCTTTAAACCGGTGGCCCATATCCGCAGCCCCTAGAAGCCATTATCCCCCATT 386
|| |||||||||| ||||||||||||||||||||||| | ||||||||||||||||| ||
Sbjct 348 ACACAATCCTTTACACCGGTGGCCCATATCCGCAGCCTCGAGAAGCCATTATCCCCCGTT 407
Query 387 TTCGATGGGAGCGATGTATGGACCATATGGTGGTTGTGGACCTTGTGGTGGTCCAATTTA 446
||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 408 TTCGATGGGGGCAATGCATGGACCATATGGTGGTTGTGGACCTTGTGGTGGTCCAATTGA 467
Query 447 TCCATACCAATCCATGCCTCGAGCCACAATGTTCAATGGTGTTCACATTTCACCATATCC 506
|||||||||||||||||||||| ||| ||||||| |||||||||||||||||| ||||||
Sbjct 468 TCCATACCAATCCATGCCTCGACCCAGAATGTTCGATGGTGTTCACATTTCACAATATCC 527
Query 507 GCCTATGGCTGCAGCATATCC-TCCTATGGCTGCAGCTGGTCCTTTTCCCTATTGGCAAA 565
||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 528 GCCTATGGCTGCAGCATATCCGTA-TATGGCTGCAGCTGGTCCTTTCCCCTATTGGCAAA 586
Query 566 CCAGACCGTACATGGATACAAATCCTATGAAGCGTTACACTAGCTATGCAGACAATTACT 625
||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||
Sbjct 587 CCAGACCGTACATGGATGCAAATCCTATGAAGCGTTACACTACCTATGCAGAAAATTACT 646
Query 626 CCTATT 631
||||||
Sbjct 647 CCTATT 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30994468699
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5