BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470311
Length=650
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03330.1 | Symbols: | Small nuclear ribonucleoprotein famil... 854 0.0
> AT1G03330.1 | Symbols: | Small nuclear ribonucleoprotein family
protein | chr1:817983-819563 REVERSE LENGTH=726
Length=726
Score = 854 bits (462), Expect = 0.0
Identities = 605/669 (90%), Gaps = 29/669 (4%)
Strand=Plus/Plus
Query 1 CTGGTGACCAAAACACAC-ATGAGGTTTTAAATATTTACTTTTTGAGGCCCTTATTAGTT 59
|||||||||||||||||| |||| |||||||||||||| ||||||| | | ||
Sbjct 1 CTGGTGACCAAAACACACTTTGAGTTTTTAAATATTTACCCTTTGAGG--C-----ACTT 53
Query 60 ATTACTTGAATTAGCAAGAACAGACCCAATCTTTTGAATAATTACATAAGTAAAGCTTTT 119
||||||| ||||| |||||||| |||||||||||| ||||||||||||| || | ||||
Sbjct 54 ATTACTTAAATTACCAAGAACATACCCAATCTTTTCAATAATTACATAAATATACCTTTG 113
Query 120 GTTTGTTATA-T-TCAAAATTAGCCCCAAAGATCATTAGGG---------TC--TACTCG 166
|||| ||||| | || |||||| ||||||||||||||||| || ||||||
Sbjct 114 GTTTCTTATATTCTCGAAATTA-ACCCAAAGATCATTAGGGTACATACATTCTTTACTCG 172
Query 167 ACATAGAGAAGTTCTAAAGTCCTCAAATCCCGCAAATCTTTTTCAGCTTCTTTGTTGAAT 226
| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 173 AGAGAGAGAAGTTCTAAAGTCCTCAAATCCCGCAAAGCTTTTTCAGCTTCTTTGTTGAAT 232
Query 227 TGC--G-AGAGGAAGAAATCAGCAGAGaaa-aaaaaTGTTGTTCTTCTCTTACTTCAAGG 282
||| | ||||| |||||||||||| |||| ||||||||||||||| |||||||||||||
Sbjct 233 TGCGAGCAGAGGTAGAAATCAGCAG-GAAACAAAAATGTTGTTCTTTTCTTACTTCAAGG 291
Query 283 ATTTGGTTGGACAAGAAGTGACGGTTGAGCTGAAGAACGATTTAGCCATAAGAGGAACTC 342
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 292 ATTTGGTTGGACAAGAAGTGACGGTTGAGCTGAAGAATGATTTAGCCATAAGAGGAACTC 351
Query 343 TTCACTCCGTTGATCAGTATCTGAATATCAAGCTCGAGAACACTAGGGTTGTTGACCAGG 402
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 TTCACTCAGTTGATCAGTATCTGAATATCAAGCTCGAGAACACTAGGGTTGTTGACCAGG 411
Query 403 ACAAATACCCTCACATGCTTTCAGTGAGAAATTGTTTCATCAGAGGATCAGTGGTAAGGT 462
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 412 ACAAGTACCCTCACATGCTTTCAGTGAGAAACTGTTTCATCAGAGGATCTGTGGTAAGGT 471
Query 463 ACGTGCAGTTACCTAAAGATGGAGTCGATGTTGATTTGCTTCACGATGCCGCTAGGAGAG 522
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 472 ACGTGCAGTTACCTAAAGATGGAGTCGATGTTGATTTGCTTCACGACGCAGCTAGAAGAG 531
Query 523 AAGCTAGGGGTGGCTGATTCTGAAA-AGTCGTTGTATCTCCAAAACTTAAATACTTTTCA 581
||||||||||||||||||||||||| | || ||||||||||||||||| |||||||||||
Sbjct 532 AAGCTAGGGGTGGCTGATTCTGAAATA-TCTTTGTATCTCCAAAACTTGAATACTTTTCA 590
Query 582 TTTGGCGTAATGGCTTGATAATGAATATTTCCCTGATGTAGAGCCTATGTTATGGCCATG 641
|| ||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 591 TTCGGCGTAATGGCTTTATAATGAATATTTCCCTGATGTAGAGCCAATGGTATGGCCATG 650
Query 642 AATCTTGTT 650
|||||||||
Sbjct 651 AATCTTGTT 659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31396341875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5