BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470313
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03350.1 | Symbols: | BSD domain-containing protein | chr1:... 1635 0.0
> AT1G03350.1 | Symbols: | BSD domain-containing protein | chr1:822638-824393
REVERSE LENGTH=1756
Length=1756
Score = 1635 bits (885), Expect = 0.0
Identities = 1071/1156 (93%), Gaps = 32/1156 (3%)
Strand=Plus/Plus
Query 1 ATGAATTTCTTCAAATCCGTCTTCTCCGACGACCTAGATCCTTCAGGAACCGAATCCGAA 60
|||||||||||||||||||||||| | || |||||||||||| ||| |||||||||||||
Sbjct 148 ATGAATTTCTTCAAATCCGTCTTCACGGAAGACCTAGATCCTCCAGAAACCGAATCCGAA 207
Query 61 TCCGATTCACCGAAACACAGCG-A-AG-A-G--CA---AGA-C-----CATCCAGAGCAA 105
|||||||||||||||||||||| | || | | || ||| | ||||||||||||
Sbjct 208 TCCGATTCACCGAAACACAGCGAAGAGCATGAACATCCAGAGCAAGAACATCCAGAGCAA 267
Query 106 TCTGACCCTAACGACGACGGTGGATGGAGCTTCGGTGGTCTGATGAAAACTATAGCCACC 165
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 268 TCTGAATCTAACGACGACGGTGGATGGAGCTTCGGTGGTCTGATGAAAACTCTAGCCACC 327
Query 166 AGATCCGAATCCGTGATTGAAACCTACCGACGAGATCTCGAAGAATTTGGTACTGGTTTG 225
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 328 AGATCCGAATCCGTGATTGAAACCTACCGACGAGATCTCGAAGAATTTGGCACAGGTTTG 387
Query 226 AAGAAGGAGATCGAAGTGGCTCAGGGATCGCTTGGTACTGTGGGACACGCGATTGATGAG 285
||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 388 AAGAAAGAGATCGAGGTGGCTCAGGGATCGCTTGGTACGGTGGGACATGCGATTGATGAG 447
Query 286 CTTGGGAACACGGTGCTAAAAGGTACGGCTGAGATCATTGCTCAAGGTAAGGAAGCGATT 345
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 448 CTTGGGAACACGGTGCTAAAAGGTACGGCTGAGATTATTGCTCAAGGTAAGGAAGCGATT 507
Query 346 TTAGCTGCTGGTAATGAATCTGATTCTTCTGATAATAATAGTAGTCAGAGTTTTGGTCGT 405
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 508 TTAGCCGCTGGTAATGAATCTGATTCTTCTGATAACAATAGTAGTCAGAGTTTTGGTCGT 567
Query 406 CGTGATAGCTTCAGTTCGAAACCCTATAGTCGCTTCGATGCTCAGATTCGTGCTGTTCAA 465
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 568 CGTGATAGCTTCAGTTCGAAACCATATAGTCGTTTCGATGCTCAGATTCGTGCTGTTCAA 627
Query 466 GGCGATCTCAACACTTACTGTGAAGAGCCTGAGGATTCTGATGATTACCAAAAGTGGGAA 525
|| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 628 GGAGATCTCAACACTTACTGTGAAGAGCCTGAGGATTCAGATGATTACAAAAAGTGGGAA 687
Query 526 TCTGGGGTTTCTCTGGATGAAAAAGCTGAGGAGATGGAGAAATTGTTGGAGGAGAATGGT 585
|||| | |||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 688 TCTGCGTTTTCTCTGGATGGAAAAGCTGAGGAGATGGAGAAATTGTTGGAGGAAAATGGT 747
Query 586 GATATGAAAGGAGTGTATAAAAGGGTTGTTCCGAGTATGGTTGATCATGAGACTTTCTGG 645
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 748 GATATGAAAGGAGTGTATAAAAGGGTCGTTCCGAGTATGGTTGATCACGAGACCTTCTGG 807
Query 646 TTTAGGTATTTCTACAAGGTTCATAAGCTCAAGCAAGCTGAGGATTTAAGGGCTAATCTT 705
|||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 808 TTTAGGTATTTCTATAGGGTTAACAAGCTCAAGCAAGCTGAGGATTTAAGGGCTAATCTT 867
Query 706 GTGAAACGAGCCATCTCTCTGGATGATGAAGAAGAATTGAGCTGGGATATTGATGATGAA 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 GTGAAACGAGCCATCTCTCTGGATGATGAAGAAGAATTGAGCTGGGATATTGATGATGAA 927
Query 766 GAGGAGAGCAGCGAGAAAGTTGTTGAAGCTACCAAAGAAGTTTCAAGATTGAAACTTGAA 825
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 928 GAGGAGAGCAGCGAGAAAGTTGTTGAAGCTACCAAAGATGTTTCAAGGTTGAAACTTGAA 987
Query 826 GGGAATGATGGTATGGGTAGTGGAGATGTGAGCGAAACTGTGAAAGATGAAGTGAAAAGT 885
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||
Sbjct 988 GGGAATGATGGTATGGGTGGTGGAGATGTGAGTGAAACTGTGAAAGATGAAGTGGAAAGT 1047
Query 886 ACAGATTCAGTGGCTAAAGTGAGCACACAAGAGGAAGTGAAAAGTGCAGATTCAGTGACT 945
||| |||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 1048 ACATATTCAGTGGCTAAAGTGAGCACGCAAGATGAAGTGACAAGTGCAGATTCAGTGACT 1107
Query 946 GAAGTGAGCAATGTTGGTTTGAAGACAGATACAGATTCTGAGGGAAAGAAGGA-ATCCGA 1004
||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | | ||
Sbjct 1108 GAAGTGAGCAATGTTGGTTTGAAGACAGATAAAGATTCTGAGGAAAAGAAGGAGA-CTGA 1166
Query 1005 T-GAGAAGGAAGTTCCAGAAGCAAAACCAGTTGTTGATGCTGCATC-TCCTGCGTCTGAT 1062
| | || |||||||||||||| |||| || ||||||||||||| || |||||||||||||
Sbjct 1167 TAGTGA-GGAAGTTCCAGAAGAAAAATCATTTGTTGATGCTGC-TCCTCCTGCGTCTGAT 1224
Query 1063 GAGGCTCCAACCCAAGATT-TGGTCAAACCCAA-ATCTGACGAAGCTGCTCCA-TCCCAA 1119
|||||||||| |||||||| || ||||||| || |||||| || | |||||| ||| ||
Sbjct 1225 GAGGCTCCAATCCAAGATTCTG-TCAAACC-AACATCTGATGA-G--GCTCCAATCC-AA 1278
Query 1120 GACTCAG-CTAAACCA 1134
|| || | | ||||||
Sbjct 1279 GATTCTGTC-AAACCA 1293
Score = 529 bits (286), Expect = 3e-149
Identities = 404/455 (89%), Gaps = 31/455 (7%)
Strand=Plus/Plus
Query 1057 TCTGATGAGGCTCCAACCCAAGATT-TGGTCAAACCCAAATCTGACGAAGCTGCTCCATC 1115
|||||||||||||||| |||||||| | |||||||| |||||||| || |||||||||||
Sbjct 1258 TCTGATGAGGCTCCAATCCAAGATTCT-GTCAAACCAAAATCTGATGAGGCTGCTCCATC 1316
Query 1116 CCAAGACTCAGCTAAACCAGATGTGGCTGCTTCTTCATCAACTCAACAACCATCTGAAGA 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 CCAAGACTCAGCTAAACCAGATGTGGCTGCTTCTTCATCAACTCAACAACCATCTGAAGA 1376
Query 1176 GGATTTGGGATGGGATGAGATCGAGGATATGAGTAGCATCGATGGTAAGGAAACGAGTAG 1235
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1377 GGATTTGGGATGGGACGAGATCGAGGATATGAGTAGCATAGATGGTAAGGAAACGAGTCG 1436
Query 1236 GTCTGGTGGTAGTCCAAACAGAGCTGAGCTGCGTAAGCGTCTGAGTGCTGCAGAAGACGA 1295
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 1437 GTCTGGTGGTAGTCCAAACAGAGCTGAGCTGCGTAAACGTCTGAGTGCTGCAGAGGAAGA 1496
Query 1296 TGAAGATTTAAGTTGGGACATTGAAGATGAAGAAGAAGAAGAATCATCATCATCCAAAGC 1355
|||||||||||||||||||||||| || || || ||||||||||||||||||||||||||
Sbjct 1497 TGAAGATTTAAGTTGGGACATTGATGAAGATGACGAAGAAGAATCATCATCATCCAAAGC 1556
Query 1356 TTAATGTTTAGTTTTAAAGTGGTGTGCTT-C---CTTTT---A--C-TT------GTTTC 1399
|||||||| |||||||||||||||||||| | ||||| | | || ||||
Sbjct 1557 TTAATGTT-AGTTTTAAAGTGGTGTGCTTTCTTACTTTTGCCAATCCTTTTACTTGTTTT 1615
Query 1400 TATAAGTTTCT--C-C---------ATTCTTCAGTTGTTTTTCTCTTCAACGTTTCTATT 1447
|| |||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 1616 TACAAGTTTCTGGCGCTTTGCCCCCATTCTTCAGTTGTTTTTCTCTTCAACGTTTCTATT 1675
Query 1448 TCACATTGATATGAAAATATGTTTCTACATTTTAC 1482
| |||||||| ||||||||||||| || |||||||
Sbjct 1676 TTACATTGATTTGAAAATATGTTTTTAAATTTTAC 1710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73091993520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5