BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470314
Length=1142
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03360.1 | Symbols: ATRRP4, RRP4 | ribosomal RNA processing ... 1725 0.0
> AT1G03360.1 | Symbols: ATRRP4, RRP4 | ribosomal RNA processing
4 | chr1:824537-826358 FORWARD LENGTH=1264
Length=1264
Score = 1725 bits (934), Expect = 0.0
Identities = 1047/1101 (95%), Gaps = 10/1101 (1%)
Strand=Plus/Plus
Query 32 TTTTGCATCGCCATTGTTGTGTTGCTGGAGCTAGATAGAGAGGAAGAGAGAGA----CTG 87
||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||
Sbjct 55 TTTTGCATCGCCATTGTTGTGTTGCTGGAGCTAAATAGAGAGAAAGAGAGAGAGTGTCTG 114
Query 88 TGATGGTGATGAGAAAGCTACAGTTACCGTTGAGCCAGACGCAGAAGGTTAGGTTTGAGA 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 TGATGGTGATGAGAAAGCTACAGTTACCGTTGAGCCAGACGCAGAAGGTTAGGTTTGAGA 174
Query 148 GAGCAATCGAGCGGCTTCAGTCACTTTCGTCGACGGCAAACTCTGACGCTTCTGTTATCG 207
||||||||||||||||||| ||||| |||||| |||| ||||||||||||||||||||||
Sbjct 175 GAGCAATCGAGCGGCTTCAATCACTGTCGTCGTCGGCTAACTCTGACGCTTCTGTTATCG 234
Query 208 TCACCGACTCTATCCCCGTCAACCACGATGATGCCTTCCTCAAAGGACACGGAACTTCCG 267
||||||||||||| ||||||||||| || |||||||||||||| ||||| ||||||||||
Sbjct 235 TCACCGACTCTATTCCCGTCAACCATGACGATGCCTTCCTCAAGGGACATGGAACTTCCG 294
Query 268 AGGTCGATGGTGAGTTACTGGCCACGGTCTGTGGAGTAGTGGAGCGTGTTGATAAGCTTG 327
|||||||||||||||| || || |||||||||||||||||||||||||| ||||||||||
Sbjct 295 AGGTCGATGGTGAGTTGCTCGCGACGGTCTGTGGAGTAGTGGAGCGTGTGGATAAGCTTG 354
Query 328 TCTATGTACGCACCTTGCGAGCCAGGTACAAGCCTGAGGTTGGTGATATTGTTGTAGGCC 387
||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 355 TCTATGTACGCACCTTGCGAGCCAGGTACAAGCCTGAAGTTGGGGATATTGTGGTAGGCC 414
Query 388 GTGTCATTGAGGTTGCTCAAAAACGTTGGAGAGTGGAGCTCAACTTTACTCAGGATGGAG 447
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 415 GTGTCATTGAGGTTGCTCAAAAACGTTGGAGAGTGGAGCTCAACTTCAATCAGGATGGAG 474
Query 448 TACTGATGCTTTCTTCCATGAACATGCCTGATGGTATTCAGAGGCGAAGAACCTCTGTGG 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TACTGATGCTTTCTTCCATGAACATGCCTGATGGTATTCAGAGGCGAAGAACCTCTGTGG 534
Query 508 ATGAACTCAATATGCGGAATATCTTTGTAGAGCACGACGTCGTTTGTGCTGAAGTACGCA 567
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 535 ATGAACTCAATATGCGGAATATCTTTGTAGAGCATGATGTCGTATGTGCTGAAGTACGCA 594
Query 568 ACTTTCAGCATGATGGTAGCTTGCAGTTACAAGCCAGAAGCCAGAAGTATGGCAAGCTTG 627
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 595 ACTTTCAGCATGATGGTAGCTTGCAGTTACAAGCCAGAAGTCAGAAGTATGGCAAGCTCG 654
Query 628 AGAAGGGACAGCTTCTGAAGGTCGATCCTTACTTGGTTAAGAGAAGCAAACATCACTTTC 687
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AGAAGGGACAACTTCTGAAGGTCGATCCTTACTTGGTTAAGAGAAGCAAACATCACTTTC 714
Query 688 ATTACGTAGAAAGTCTTGGGATTGATTTGATTATTGGCTGCAATGGTTTCATATGGGTTG 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 ATTACGTAGAAAGTCTTGGGATTGATTTGATTATTGGCTGCAATGGTTTCATATGGGTTG 774
Query 748 GAGAACATGTCGAAGTGAGAGATCCTATGGCGATAGATGATCAGAAAGATGAGGAGATGA 807
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 775 GAGAACATGTCGAAGTGAGAGATCCTATGGCAATAGATGATCAGAAAGATGAGGAAATGA 834
Query 808 TCTCATCCTCCTCCGCAGGAAAAGAGCAAAACCATAATCCACTCGAGACTCGACAAACCA 867
|||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 835 TCTCATCCTCCTCCACAGGAAAAGAGCAAAGCCATATTCCACTCGAGACTCGACAAACCA 894
Query 868 TATGCAGAATCGGGAATGCGATACGCGTGTTGTCTAATCTAGGCTTCACCGTGACTCTAG 927
||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 895 TATGCAGAATCGGGAATGCGATACGTGTCTTGTCTAATCTAGGCTTCACCGTGACACTAG 954
Query 928 AAGTAATCATAGAGACTGTTAACCTCAGTAACTCAAAGAATATTGACATACACGACATGC 987
|||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 955 AAGTAATCATGGAGACTGTTAACCTCAGTAACTCAAAGAATATTGACATACATGATATGC 1014
Query 988 TTGGATCAGAGTTTCACGTTGTGGTAGCAGAGAATGAAGCTGAAAGAAGACGCACGAAGA 1047
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1015 TTGGATCAGAGTTTCACGTTGTGGTAGCAGAGAATGAAGCTGAAAGAAGACGTACAAAGA 1074
Query 1048 GGAAAAAGTGAAACC-ATCCCGTTTTTGTCACCGAT-TCAACAGAGACTTGTAACGTGTA 1105
||||||||||||| | | ||| |||||||||| ||| | | |||||||||||||||||||
Sbjct 1075 GGAAAAAGTGAAAACTACCCC-TTTTTGTCACTGATGT-ATCAGAGACTTGTAACGTGTA 1132
Query 1106 TTAGATCATGTGGG-CTTGTT 1125
||||||||| | || ||||||
Sbjct 1133 TTAGATCAT-TCGGTCTTGTT 1152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56023808220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5