BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470318
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03440.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 2333 0.0
AT4G03010.1 | Symbols: | RNI-like superfamily protein | chr4:1... 1059 0.0
> AT1G03440.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr1:852366-854032 FORWARD LENGTH=1667
Length=1667
Score = 2333 bits (1263), Expect = 0.0
Identities = 1531/1656 (92%), Gaps = 35/1656 (2%)
Strand=Plus/Plus
Query 1 GGTTTTTGGCTTCCTTCTCAAGCCATTTTGTTTA--CTCTTTCTCTTCTCTCGATAAA-C 57
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 14 GGTTTTTGGCTTCCTTCTCAAGCCATTTTGTTTACTCTCTTTCTCTTCTCTCGATAAACC 73
Query 58 ---C-TTTC-T--TTTT--TAATCG--T-TTGATAATCCGCCATTAAAGCTCTCACGGAA 105
| |||| | |||| |||||| | |||||||||| ||||||||||||||||||||
Sbjct 74 TTTCTTTTCTTCCTTTTGCTAATCGTTTATTGATAATCCTCCATTAAAGCTCTCACGGAA 133
Query 106 GCTCCCACGAGAACACCTTAC-TTCCACCACATAAACCAGAGACTTTCCCTCTCACGAGA 164
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 134 GCTCCCACGAGAACACCTT-CTTTCCACCACATAAACCAGAGACTTTCCCTCTCACGAGA 192
Query 165 AATCAGAAACCATTACCCATTTGCTCTGTGCTTTACAGGTTGTCTCTGTTCTTCTCT-TT 223
||||||||| || |||||||| ||| | |||||||| | ||||||||||||| || |
Sbjct 193 AATCAGAAAACAAAACCCATTT--TCTCTACTTTACAGCTCGTCTCTGTTCTTCCCTCTG 250
Query 224 TGTATATATATAGTCTCTGTTTCTTGAACCTGTAACAGCTAAGTCTgaagaagaagaaga 283
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 251 TGTATATATATAGTCTCTGTTTCTTGAACCTGTAACGGCTAAGTCTGAAGAAGAAGAAGA 310
Query 284 ag-a-a-gaTGATGAGCTTTACCACGTTGATATGGTGTTTGATGATCCTGCTTCGATTCG 340
|| | | ||||||||| ||||||| |||| | |||||||||||| |||||||||||||||
Sbjct 311 AGAAGATGATGATGAGATTTACCAAGTTGGTTTGGTGTTTGATGTTCCTGCTTCGATTCG 370
Query 341 GGTTCTTCACGGAGGCGATTCTGGACCCAGTTGATTTCTTGGCTCTGCAAGCGATTCGTA 400
| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 371 GCTTCTTCACGGAGGCGATTCTCGACCCAGTTGATTTCTTGGCTCTGCAAGCTATTCGTA 430
Query 401 AATCGCTCGATGATTTGCCAGGTTCCAAGTTCTTCGAGTCTTGGGATTTCACTTCTGATC 460
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 AATCCCTCGATGACTTGCCAGGTTCCAAGTTCTTCGAGTCTTGGGATTTCACTTCTGATC 490
Query 461 CTTGTGGCTTCGCTGGCGTCTACTGCGACGGAGAAAAAGTTATTTCTCTCAATCTCGGCG 520
| || ||||||||||||||||||||| ||||||| ||||| || ||||||||||||||||
Sbjct 491 CATGCGGCTTCGCTGGCGTCTACTGCAACGGAGATAAAGTAATCTCTCTCAATCTCGGCG 550
Query 521 ATCCCAGAGCCGGGTCACCCGGTTTATCGGGTCGGATCGACCCAGCTATAGGCAAACTCT 580
|||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 551 ATCCTAGAGCCGGTTCACCCGGTTTATCGGGTCGGATCGACCCAGCAATAGGCAAACTCT 610
Query 581 CTGCTCTCACGGAGCTCTCCATTGTCCCCGGCAGAATCATGGGTGCTTTGCCGGCAACAG 640
|||| ||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 611 CTGCACTCACTGAGCTCTCCATTGTCCCCGGCAGAATCATGGGTGCGTTACCGGCAACAA 670
Query 641 TCTCTCAGCTTAAAGACCTTAGATTTCTCGCAATCAGTCGGAATTTCATCTCCGGCGAGA 700
|||||||||| ||||||||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 671 TCTCTCAGCTAAAAGACCTTCGTTTTCTCGCAATCAGCCGGAATTTCATCTCCGGCGAGA 730
Query 701 TTCCGGCGAGTCTCGGTGAGGTTCGCGGACTTAGAACACTGGATTTGAGTTACAATCAGT 760
|||||||||||||||| |||||||| || || |||||||||||||| || || ||||| |
Sbjct 731 TTCCGGCGAGTCTCGGCGAGGTTCGTGGTCTCAGAACACTGGATTTAAGCTATAATCAAT 790
Query 761 TAACCGGAACTATCTCTCCGTCAATCGGATCCTTACCGGAGCTCTCCAATTTGATTCTCT 820
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 791 TAACCGGAACTATCTCTCCGTCAATCGGATCGTTACCGGAGCTCTCCAATTTGATTCTCT 850
Query 821 GCCACAATCACTTAACCGGATCAATCCCTCCGTTTCTATCACAAACCCTAACCCGAATCG 880
||||||| ||||||||||||||||| || |||||||| |||||||| |||||||||||||
Sbjct 851 GCCACAACCACTTAACCGGATCAATACCACCGTTTCTCTCACAAACTCTAACCCGAATCG 910
Query 881 ATCTCAAACGCAACAGCCTCACCGGCTCAATCTCTCCGGCGTCTCTCCCTCCGTCGCTAC 940
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 911 ATCTCAAACGCAACAGCCTCACCGGCTCAATCTCACCGGCGTCTCTCCCTCCGTCGCTTC 970
Query 941 AATACCTCTCACTCGCTTGGAACCAGTTAACCGGACCGGTAGACCATGTCTTACTCCGGT 1000
||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||
Sbjct 971 AATACCTCTCACTCGCTTGGAACCAGTTAACCGGATCGGTATACCATGTTTTACTCCGGT 1030
Query 1001 TAAACCAGCTTAACTACCTCGATCTCAGCTTAAACCGGTTCACCGGTACAATCCCCGGTC 1060
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1031 TGAACCAGCTTAACTACCTTGATCTCAGCTTAAACCGGTTCACCGGTACAATCCCCGCTC 1090
Query 1061 GAATCTTCGCCTTCCCGATCACAAACCTTCAATTACAACGCAATTTCTTCTACGGATTGA 1120
|| |||||||||||||||||||||| ||||| ||||||||||||||||||| ||| || |
Sbjct 1091 GAGTCTTCGCCTTCCCGATCACAAATCTTCAGTTACAACGCAATTTCTTCTTCGGTTTAA 1150
Query 1121 TTCAGCCGGCGAATCAAGTGACGATC-CCAACCGTCGATCTCAGCTACAATCGATTCTCC 1179
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1151 TTCAGCCGGCGAATCAAGTGACGATCTCC-ACCGTCGATCTCAGCTACAATCGATTCTCC 1209
Query 1180 GGTGGGATATCTCCGCTTCTCTCAAGCGTAGAGAATCTCTACTTAAACAGCAATCGCTTC 1239
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1210 GGTGGGATATCTCCGCTTCTCTCAAGCGTTGAGAATCTCTACTTAAACAGCAATCGTTTC 1269
Query 1240 ACCGGCGAAGTTCCGGCTAGTTTCGTGGAGAGGTTGTTATCGGCGAGTATACAGACGCTG 1299
||||| ||||| ||||| |||||||||||||||||||||||||||| |||||||| |||
Sbjct 1270 ACCGGTGAAGTCCCGGCGAGTTTCGTGGAGAGGTTGTTATCGGCGAACATACAGACTCTG 1329
Query 1300 TATCTGCAGCATAACTTCTTGACGGGAATACAGATAAGCCCGGCGGCGGAAATCCCGGTG 1359
||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1330 TATCTACAGCATAATTTCTTGACGGGAATACAGATTAGCCCGGCGGCGGAAATCCCGGTG 1389
Query 1360 AGCAGCTCGCTGTGTCTGCAGTATAACTGTATGGTGCCGCCGTTACAGACGCCGTGTCCG 1419
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1390 AGCAGCTCGCTGTGTCTGCAGTATAACTGTATGGTGCCGCCGTTACAAACCCCGTGTCCG 1449
Query 1420 CTTAAGGCCGGCCCACAAAAGACTAGGCCCACTACACAATGCAGCGAGTGGCGAGGGTAG 1479
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1450 CTAAAGGCCGGCCCACAAAAGACTAGGCCCACTACACAATGCACCGAGTGGCGAGGGTAG 1509
Query 1480 TTTGGTAAATGCCGTTTTCTTATATACT--TATGtttttctttttttttGGTTATAGTTT 1537
|||||||||| || ||||||||||| | ||||||||| ||||||| ||||| |||||
Sbjct 1510 TTTGGTAAATTACGCTTTCTTATATAATACTATGTTTTTATTTTTTT--GGTTAAAGTTT 1567
Query 1538 TTGAGGAACACAGGGTGTTTCAACGTGTTaaaaaaa--cttttaaaggaaaaaaaCGATT 1595
|||||||||| || ||||||| ||||||||||||| |||||||||||||||| |||||
Sbjct 1568 TTGAGGAACAGAG--TGTTTCATCGTGTTAAAAAAAAACTTTTAAAGGAAAAAA-CGATT 1624
Query 1596 CGTTTATTCGTTTGGTGAGAATGAAGATTAGAGTTT 1631
|||||||||||| |||||||||||||||||||||||
Sbjct 1625 CGTTTATTCGTT-GGTGAGAATGAAGATTAGAGTTT 1659
> AT4G03010.1 | Symbols: | RNI-like superfamily protein | chr4:1329952-1331139
FORWARD LENGTH=1188
Length=1188
Score = 1059 bits (573), Expect = 0.0
Identities = 980/1177 (83%), Gaps = 25/1177 (2%)
Strand=Plus/Plus
Query 314 GGTGTTTGATGATCCTGCTTCGATTCGGGTTCTTCACGGAGGCGATTC-TGGACCCAGTT 372
||| |||| || | || ||||||||||| || || ||| ||| || | | |||||||
Sbjct 24 GGT-TTTGCTGCTTCTTCTTCGATTCGGTTTAATCGTGGAATCGA-TCATCGTCCCAGTT 81
Query 373 GATTTCTTGGCTCTGCAAGCGATTCGTAAATCGCTCGATGATTTGCCAGGTTCCAAGTTC 432
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 82 GATTTCTTGGCTCTGCAAGCGATTCGTAAATCACTCGATGATTTGCCAGGTTCCAATTTC 141
Query 433 TTCGAGTCTTGGGATTTCACTTCTGATCCTTGTGGCTTCGCTGGCGTCTACTGCGACGGA 492
||||| || ||||||||||| |||||||||||| |||||| || || ||||| |||| |
Sbjct 142 TTCGATTCATGGGATTTCACCTCTGATCCTTGTAACTTCGCAGGAGTTTACTGTGACG-A 200
Query 493 -GAAAAAGTTATTTCTCTCAATCTCGGCGATCCCAGAGCCGGGTCACCCGGTTTATCGGG 551
|| ||||| | | || || ||||| ||||| |||||||| |||||||||||||| ||
Sbjct 201 TGATAAAGTAACCGCGCTTAACCTCGGTGATCCAAGAGCCGGTTCACCCGGTTTATCTGG 260
Query 552 TCGGATCGACCCAGCTATAGGCAAACTCTCTGCTCTCACGGAGCTCTCCATTGTCCCCGG 611
|||||| ||||| ||||| || |||||||||||| | ||||||||||| || ||||| ||
Sbjct 261 TCGGATTGACCCGGCTATTGGAAAACTCTCTGCTTTAACGGAGCTCTCTATCGTCCCGGG 320
Query 612 -CAGAATCATGGGTGCTTTGCCGGCA-ACAGTCTCTCAGCTTAAAGAC-CTTAGATTTCT 668
| || |||||||| | || ||| || ||| |||| ||| | ||||| ||| |||||||
Sbjct 321 TCGGA-TCATGGGTTCGTTACCG-CATACAATCTCACAG-TCAAAGAATCTTCGATTTCT 377
Query 669 CGCAATCAGTCGGAATTTCATCTCCGGCGAGATTCCGGCGAGTCTCGGTGAGGTTCGCGG 728
||||||||||||||||||||||||||| |||||||| |||||||| | ||| |||| ||
Sbjct 378 CGCAATCAGTCGGAATTTCATCTCCGGTGAGATTCCAGCGAGTCTAAGCGAGCTTCGGGG 437
Query 729 ACTTAGAACACTGGATTTGAGTTACAATCAGTTAACCGGAACTATCTCTCCGTCAATCGG 788
||| | ||| || |||||||| || |||||| ||||||| | ||| |||||||||||||
Sbjct 438 ACTCAAAACGCTTGATTTGAGCTATAATCAGCTAACCGGGTCGATCCCTCCGTCAATCGG 497
Query 789 ATCCTTACCGGAGCTCTCCAATTTGATTCTCTGCCACAATCACTT-AACCGGATCAATCC 847
||||||||||||||| |||||| ||||||| || ||||||||||| ||| |||||||| |
Sbjct 498 ATCCTTACCGGAGCTATCCAATCTGATTCTATGTCACAATCACTTGAAC-GGATCAATTC 556
Query 848 CTCCGTTTCTATCACAAACCCTAACCCGAATCGATCTCAAACGCAACAGCCTCACCGGC- 906
||| || || |||||| || ||||||||||||||||||| ||||||| ||||||||
Sbjct 557 CTCAATTCCTCTCACAATCCTTAACCCGAATCGATCTCAAGCGCAACAATCTCACCGGTA 616
Query 907 TCAATCTCTCCGGCGTCTCTCCCTCCGTCGCTACAATACCTCTCACTCGCTTGGAACCAG 966
| ||| |||| | ||||||| || |||||| ||||||| ||||| |||||||||||||||
Sbjct 617 T-AATTTCTCTGACGTCTCTTCCGCCGTCGTTACAATATCTCTCGCTCGCTTGGAACCAG 675
Query 967 TTAACCGGACCGGTAGACCATGTCTTACTCCGGTTAAACCAGCTTAACTACCTCGATCTC 1026
||||||| || ||| ||| || |||||| | ||||||||||| || ||||| ||||||
Sbjct 676 CTAACCGGTCCAGTATACCGGGTTTTACTCAGATTAAACCAGCTCAATTACCTTGATCTC 735
Query 1027 AGCTTAAACCGGTTCACCGGTACAATCCCCGGTC-GAATCTTCGCCTTCCCGATCACAAA 1085
||||||||||||||||||||| |||||||||||| || ||||| ||||||||||||| ||
Sbjct 736 AGCTTAAACCGGTTCACCGGTGCAATCCCCGGTCAGA-TCTTCACCTTCCCGATCACCAA 794
Query 1086 CCTTCAATTACAACGCAATTTCTTCTACGGATTGATTCAGCCGGCGAATCAAGTGACGAT 1145
||||||||||||||||||||||||||||| |||| || ||| ||||||| || || ||
Sbjct 795 TCTTCAATTACAACGCAATTTCTTCTACGGCGTGATCCAACCGCCGAATCAGGTAACAAT 854
Query 1146 CCCAACCGTCGATCTCAGCTACAATC-GATTCTCCGGTGGGATATCTCCGCTTCTCTC-A 1203
|||||||||||| | |||||||| | |||||||||| | | | |||||||||||||| |
Sbjct 855 ACCAACCGTCGATTTAAGCTACAA-CAGATTCTCCGGCGAGCTTTCTCCGCTTCTCTCCA 913
Query 1204 AGCGTAGAGAATCTCTACTTAAACAGCAATCGCTTCACCGG-CGAAGTTCCGGCTAGTTT 1262
| |||| |||| || || || |||| || || |||||||| | ||||||||| ||| ||
Sbjct 914 A-CGTACAGAACCTATATTTGAACAATAACCGGTTCACCGGTC-AAGTTCCGGTTAGCTT 971
Query 1263 CGTGGAGAGGTTGTTATCGGCGAGTATACAGACGCTGTATCTGCAGCATAACTTCTTGAC 1322
|||||| |||| || | ||| ||| || || ||||| || || || |||||||||||
Sbjct 972 CGTGGATCGGTTATTGGCATCGAATATTCAAACACTGTACCTCCAACACAACTTCTTGAC 1031
Query 1323 GGGAATACAGATAAGCCCGGCGGCGGAAATCCCGGTGAGCAGCTCGCTGTGTCTGCAGTA 1382
||||||||| || ||||||||||| || || |||||||||||||||||||||||||| ||
Sbjct 1032 GGGAATACAAATTAGCCCGGCGGCAGATATTCCGGTGAGCAGCTCGCTGTGTCTGCAATA 1091
Query 1383 TAACTGTATGGTGCCGCCGTTACAGACGCCGTGTCCGCTTAAGGCCGGCCCACA-AAAGA 1441
||||||||||||| ||| ||||||||||||||||| |||| ||||| || ||| |
Sbjct 1092 CAACTGTATGGTGCTACCGGTACAGACGCCGTGTCCGGTTAAAGCCGGTTTGCAGAAA-A 1150
Query 1442 CTAGGCCCACTACACAATGCAGCGAGTGGCGAGGGTA 1478
|||| ||||| || || ||||||||||||||||||||
Sbjct 1151 CTAGACCCACAACGCAGTGCAGCGAGTGGCGAGGGTA 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80622075270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5