BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470319
Length=2506
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03445.1 | Symbols: BSU1 | Serine/threonine protein phosphat... 3563 0.0
> AT1G03445.1 | Symbols: BSU1 | Serine/threonine protein phosphatase
family protein | chr1:854410-859701 REVERSE LENGTH=2727
Length=2727
Score = 3563 bits (1929), Expect = 0.0
Identities = 2316/2498 (93%), Gaps = 45/2498 (2%)
Strand=Plus/Plus
Query 1 AAATTTTAGGCTATAAAATGGAGACGAGGGCGATGGGATTTCACCACCTTTCTCCACCAC 60
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 30 AAATTTTAGGCTATAAAATGGAGACGAAGGCGATTGGATTTCACCACCTTTCTCCACCAC 89
Query 61 -AAA-A---TCTTATGGCTTCTCAATCGTATTCGTATCATCAATATCCATCTCCTTCTTA 115
||| | | |||||||| || ||| | || | | ||||||||||||||||||| ||
Sbjct 90 AAAATATTGTGTTATGGCTCCT-GATC--AATC-T-T-ATCAATATCCATCTCCTTCGTA 143
Query 116 TGAATCGATACAGACCTTTTACGATACCGATGAGGGTTGGCCGGGACCTAGATGCGGCCA 175
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 144 TGAATCGATACAGACCTTTTACGATACCGATGAGGATTGGCCGGGTCCTAGATGCGGCCA 203
Query 176 TACTCTCACGGGGGTTTTCGTCAACAATTCCCATCAGCTTATCCTCTTCGGCGGCAGTAG 235
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 TACTCTCACGGCGGTTTTCGTCAACAATTCCCATCAGCTTATCCTCTTCGGCGGCAGTAC 263
Query 236 TACTGCCGTCACCACCCATGACTCCTCCTTACCCGAGATCAGTTTAGAAGGCGTCACCAA 295
|||||||||| ||| |||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 264 TACTGCCGTCGCCAACCATAACTCCTCCTTACCCGAGATCAGTTTAGATGGCGTCACCAA 323
Query 296 TTCGGTGCATTCTTTTGATGTTTTGACCAGGAAGTGGACACGGCTTAATCCGGA-TGGTG 354
|||||| ||||||||||||||||||||||||||||||||| |||||||||| || |||||
Sbjct 324 TTCGGTCCATTCTTTTGATGTTTTGACCAGGAAGTGGACAAGGCTTAATCC-GATTGGTG 382
Query 355 ACGTTCCGTCTCCCAGGGCTTGTCATGCTGCCGCTTTATATGGCACCTTGCTCCTTATTC 414
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 383 ACGTTCCGTCTCCCAGGGCTTGTCATGCTGCCGCTTTATATGGCACCTTGATCCTTATTC 442
Query 415 AGGGTGGGATTGGTCCATCGGGGCCTTCTGATGGAGATGTCTACATGCTTGACATTACTA 474
||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 443 AGGGTGGGATTGGTCCATCCGGACCTTCTGATGGAGATGTCTACATGCTTGACATGACTA 502
Query 475 ATAACAAGTGGCTTAAGTTGCTGGTTGGAGGGGAGGCTCCAAGCCCTCGCTATGGCCATG 534
||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 503 ATAACAAGTGGATTAAGTTTCTGGTTGGAGGGGAGACTCCAAGCCCTCGCTATGGCCATG 562
Query 535 TTATGGATATAGCTGCTCAGAGGTGGCTTGTCATATTCAGCGGGAATAATGGAAATGAAA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 TTATGGATATAGCTGCTCAGAGGTGGCTTGTCATATTCAGCGGGAATAATGGAAATGAAA 622
Query 595 TTCTTGCTGATACATGGGCACTGGACACGCGTGGATCATTTACGTGGGACAGATTGAACC 654
|||| | ||||||||||||| |||||||||||||| ||||| | ||||||||||||||||
Sbjct 623 TTCTGGATGATACATGGGCATTGGACACGCGTGGACCATTTTCATGGGACAGATTGAACC 682
Query 655 CATCTGGCAATCAGCCAAGTGGGAGAATGTATGCTTCTGGTACTTCTCGAGAAGATGGTA 714
| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 683 CGTCTGGCAATCAGCCAAGTGGGAGAATGTATGCTTCAGGTAGTTCTCGAGAAGATGGTA 742
Query 715 tttttttGCTCTGCGGTGGAATAGATCACTCAGGAGTGACACTGGGAGATACCTACGGGC 774
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 743 TTTTTTTGCTCTGCGGTGGAATAGATCACTCAGGAGTGACACTGGGAGATACTTACGGGC 802
Query 775 TGAAAATGGATAGCGTTAGTCAGTGTGCTTGGACTCCTGTTCCTGGTGTAGCTCCTTCCC 834
||||||||||||||| || | ||| ||||||||||||||| | ||||||||||||||
Sbjct 803 TGAAAATGGATAGCGATA---A-TGT--TTGGACTCCTGTTCCAGCTGTAGCTCCTTCCC 856
Query 835 CGAGATATCAACATACTGCGGTTTTTGGGGGTCCAAAAATGCATGTCATTGGGGGTGTAC 894
||||||||||||||||||||||||| || ||| ||||| ||||||||||||||||| |||
Sbjct 857 CGAGATATCAACATACTGCGGTTTTCGGAGGTTCAAAACTGCATGTCATTGGGGGTATAC 916
Query 895 TGAATAGGGCTCGCCTAATCTATGGTGAAGCTGTTGCTGCTGTGCTTGATACTGAGACTG 954
|||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||
Sbjct 917 TGAATAGGGCTCGCCTAATCGATGGTGAAGCAGTTGTTGCTGTGCTTGATACTGAGACTG 976
Query 955 GTGAATGGTTAGATGCCGAT-AGACCAGAGACCTCTATGAGTGGCGC-ATATAGACAAAA 1012
|||||||| ||||| || || | ||||||||||||| ||| ||||| | ||||||||||
Sbjct 977 GTGAATGGGTAGATACCAATCA-ACCAGAGACCTCTGCGAGCGGCGCCA-ATAGACAAAA 1034
Query 1013 TCAATATCAACTTATGCGACGTTATCACCATGCTGCTGCATCATTTGGTACCCACATGTA 1072
||||||||||||||||||||||| |||||||||||||||||| ||||| | |||| | ||
Sbjct 1035 TCAATATCAACTTATGCGACGTTGTCACCATGCTGCTGCATCGTTTGGCAGCCACCTATA 1094
Query 1073 TGTGCATGGCGGGATTAGAGATGATGTATTGCTTGACGATTTGCTAGTGGCTGAAACATC 1132
||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 1095 TGTGCATGGCGGGATTAGAGAAGATGTATTGCTCGACGATTTGCTAGTTGCTGAAACATC 1154
Query 1133 CCAGTCTTCAAGTCCTGAACTAGAAGAAGATAATCCTGAAAATTATATGTTGCTCGACGA 1192
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1155 CCAGTCTTCAAGTCCTGAACCAGAAGAAGATAATCCTGATAATTATATGTTGCTCGACGA 1214
Query 1193 TTTTCTAATGGATGAAATACCTAAGCCTTTAGGTTCTGAACCAGAAGCTCCATCCTTTAT 1252
| ||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1215 CTATCTAATGGATGAA---CCTAAGCCTTTAAGTTCTGAACCAGAAGCTTCATCCTTTAT 1271
Query 1253 AAGGAGGAGCTCAAGTGAAAGTGCGATGGAGAGATTGGCAGAGGCATATAACTTACCAAC 1312
|| ||||||| ||||||||| ||||||||| ||||||||||||||| |||||||||||||
Sbjct 1272 AATGAGGAGCACAAGTGAAATTGCGATGGATAGATTGGCAGAGGCACATAACTTACCAAC 1331
Query 1313 TATAGAAAATGCTTTTTATGATAGTGAAATTGAAGGATATGTTCCACTTCAGCATGGAGC 1372
||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 1332 TATCGAAAATGCTTTTTATGATAGTGCTATTGAAGGATACGTTCCACTTCAACATGGAGC 1391
Query 1373 TGAGTCGGATGGAAATAGAGGTGGCTTGGTGAGAACT--AA--TT----C--T--ACTCA 1420
|||| ||| ||||||| |||||||||||||||||||| || || | | |||||
Sbjct 1392 TGAGACGGTTGGAAATCGAGGTGGCTTGGTGAGAACTGCAAGCTTGGATCAATCTACTCA 1451
Query 1421 AGACTTGCATAAAAAGGTCATTTCGACTCTGTTGAGACCTAAAACCTGGATGCCTCCTGC 1480
|||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1452 AGACTTGCATAAGAAGGTCATTTCGACACTGTTGAGACCTAAAACCTGGACGCCTCCTGC 1511
Query 1481 CAACAGAGATTTTTTCTTGAGTTATTTAGAAGTCAAGTATTTGTGCGATGAGGTGGAGAA 1540
||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||
Sbjct 1512 CAACAGAGATTTTTTCTTGAGTTATTTAGAAGTTAAGCATTTGTGCGATGAGGTAGAGAA 1571
Query 1541 AATATTTAAGCATGAACCAACACTTCTTCAGCTCAAAGTTCCTATCAAAGTCTTCGGCGA 1600
|||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1572 AATATTTATGAATGAACCAACACTTCTTCAGCTCAAAGTTCCAATCAAAGTCTTCGGCGA 1631
Query 1601 TATCCATGGACAATACGGGGATTTGATGCGTTTATTTCATGAATATGGATATCCTTCAGT 1660
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1632 TATCCATGGACAATACGGGGATTTGATGCGTTTATTTCATGAATATGGACATCCTTCAGT 1691
Query 1661 GGAAGGAGATATCACGCATATAGACTATTTGTTTTTGGGAGATTATGTTGACCGAGGACG 1720
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1692 GGAAGGAGATATCACCCATATAGACTATTTGTTTTTGGGAGATTATGTTGACCGTGGACA 1751
Query 1721 ACACAGCTTGGAGACCATCATGTTGCTGTTTGCTTTGAAGATTGAATATCCGAAGAACAT 1780
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1752 ACACAGCTTGGAGATCATCATGTTGCTGTTTGCTTTGAAGATAGAATATCCGAAGAACAT 1811
Query 1781 CCACTTGATTCGTGGAAATCATGAGTCTCTTGCAATGAATAGAATTTATGGTTTTCTTAA 1840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1812 CCACTTGATTCGTGGAAATCATGAGTCTCTTGCAATGAATAGAATTTATGGTTTTCTTAC 1871
Query 1841 AGAATGCAAAGAAAGAATGGGTGATTCCGATGGGTTTGAAGCATGGTTAAAGATTAATCA 1900
||||||| ||||||||||||| || ||| ||||||| |||||||||||||||||||||||
Sbjct 1872 AGAATGCGAAGAAAGAATGGGCGAGTCCTATGGGTTCGAAGCATGGTTAAAGATTAATCA 1931
Query 1901 AGTTTTTGATCATCTTCCGCTTGCTGCACTTCTCGAAAAGAGAGTTTTGTGCGTACACGG 1960
|||||||||| |||||||||||||||||||||| ||||||| ||||||||| || || ||
Sbjct 1932 AGTTTTTGATTATCTTCCGCTTGCTGCACTTCTAGAAAAGAAAGTTTTGTGTGTCCATGG 1991
Query 1961 CGGAATTGGGAGGGCAGATACCG-TCGAACAAATTGAAAAGATCAAAAGGCCGGTGTTCC 2019
||||||||||||||||| ||| | ||||| |||||||||| ||| ||||||||| ||||
Sbjct 1992 CGGAATTGGGAGGGCAGTTAC-GATCGAAGAAATTGAAAATATCGAAAGGCCGGCATTCC 2050
Query 2020 CGGATACTACTGAATCAATTGTCTTGAAAGACATCTTATGGTCAGATCCTACGAGGAATG 2079
|||||||| || ||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 2051 CGGATACTG--GA-TCAATGGTCTTGAAAGACATCTTATGGTCAGATCCTACGATGAATG 2107
Query 2080 ACACTGTTTTGGGTATAGTAGAAAATCCCAGAGGAGAAGGTGTTGTCTCATTCGGGCCGG 2139
|||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |
Sbjct 2108 ACACTGTTTTGGGTATAGTAGACAATGCCAGAGGAGAAGGTGTTGTCTCATTTGGGCCTG 2167
Query 2140 ATATAGTCAAGGCATTTCTAGAAAGGAATGGACTGGAGATGATACTAAGAGCACACGAGT 2199
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2168 ATATAGTCAAGGCATTTCTAGAAAGGAATGGTCTGGAGATGATACTAAGAGCACACGAGT 2227
Query 2200 GTGTTATTGACGGCTTTGAAAGATTCGCTCAAGGACGGCTTATAACAGTCTTTTCTGCTA 2259
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 2228 GTGTTATTGACGGCTTTGAAAGATTCGCTGACGGACGGCTTATAACAGTCTTTTCTGCTA 2287
Query 2260 CAAACTACTGTGGAT-TGGCCCAAAATGCGGGAGCAATATTGGTAATTGGTAGAGATATG 2318
|||| ||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 2288 CAAATTACTGTGGAACTG-CACAAAATGCGGGAGCAATATTGGTAATTGGTAGAGATATG 2346
Query 2319 GTCATTTATCCTAAGATGATTCATCCTAACCCTCCTCCCATCTCATCTTCAGAAGAAGAC 2378
|| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2347 GTAATTTATCCTAAGCTGATTCATCCTCACCCTCCTCCCATCTCATCTTCAGAAGAAGAC 2406
Query 2379 TCTCCAGACAAAGCAGGGATGCAGGAGCTGAACATCGAGAAACCGCCTACTCCAGCTCGA 2438
| | ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2407 TATACAGACAAAGCATGGATGCAGGAGCTGAACATCGAGATGCCGCCTACTCCAGCTCGA 2466
Query 2439 GGGGAGTCCAGTGAGTAAAGGCAGAGATTTGGCATAGA 2476
|||||||| ||||| |||||||||| |||||| |||||
Sbjct 2467 GGGGAGTCAAGTGAATAAAGGCAGATATTTGGTATAGA 2504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124363851697
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5