BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470321
Length=1651
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 2459 0.0
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein... 289 7e-77
> AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:860788-864075 REVERSE LENGTH=1694
Length=1694
Score = 2459 bits (1331), Expect = 0.0
Identities = 1558/1664 (94%), Gaps = 30/1664 (2%)
Strand=Plus/Plus
Query 6 gagagagagaAACAATGGCGGAGGAGACGATGGAGAACGAAGAGAGGGTGAAGCTGTTCG 65
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 43 GAGAGAAAGAAATAATGGCGGAGGAGACGATGGAGAACGAAGAGAGGGTGAAGCTGTTCG 102
Query 66 TCGGACAAGTTCCGAAGCATATGACGGAGATTCAGCTCCTCACATTGTTTAGCGAATTCT 125
||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||
Sbjct 103 TCGGACAAGTTCCGAAGCACATGACGGAGATTCAGCTCCTCACATTGTTTCGAGAATTCT 162
Query 126 CCATCGTCGATGAAGTCAACATCATTAAGGAGAAGACTACACGAGTTCCCCGAGGATGTT 185
|||||||| ||||||||||||||||||| |||||||| ||||||| ||| ||||||||||
Sbjct 163 CCATCGTCAATGAAGTCAACATCATTAAAGAGAAGACAACACGAGCTCCTCGAGGATGTT 222
Query 186 GTTTTCTGACATGTCCTTCAAGGGAAGAAGCTGACAAGGTGATCAATGGTTTTCATAACA 245
||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||
Sbjct 223 GTTTTCTGACATGTCCTACAAGGGAAGATGCTGACAAGGTGATCAATAGTTTTCATAACA 282
Query 246 AGAAGACATTGCCTGGGGCATCTAGTCCGTTACAAGTTAAGTATGCAGATGGCGAGAGGG 305
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 283 AGAAGACATTGCCTGGGGCATCTAGTCCGTTGCAAGTTAAGTATGCAGATGGCGAGTTGG 342
Query 306 AAAGGCTAGATGTTCTTGACTGTTCTTGCAATCCAGAGCACAAACTTTTCGTCGGTATGC 365
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 343 AAAGACTAGATGTTCTTGACTGTTCGTGCAATCCAGAGCACAAACTTTTCGTCGGTATGC 402
Query 366 TTCCAAAGAATGTCTCTGAGACTGAAGTCCAATCCTTATTCTCCGAATACGGAACCATTA 425
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 403 TTCCAAAGAATGTCTCTGAAACTGAAGTCCAGTCCTTATTCTCTGAATACGGAACCATTA 462
Query 426 AGGATCTACAGATTCTAAGAGGGTCTCTACAAACTAGCAAGGGCTGTCTGTTTCTAAAGT 485
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 463 AGGATCTACAGATTCTAAGAGGGTCTCTACAAACTAGCAAAGGCTGTCTGTTTCTAAAGT 522
Query 486 ATGAGTCTAAAGAACAAGCAGTCACAGCTATGGAAGCCCTCAACGGAAGACATATAATGG 545
| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 523 ACGAGTCTAAAGAACAAGCGGTCGCAGCTATGGAAGCCCTCAACGGAAGACATATAATGG 582
Query 546 AGGGAGCAAATGTTCCTTTGATTGTCAAATGGGCAGACACAGAAAGGGAAAGACAAGCCC 605
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
Sbjct 583 AGGGAGCAAATGTTCCTTTGATTGTTAAATGGGCAGACACAGAAAAGGAAAGACAAGCTC 642
Query 606 GAAGACTTCAAAAAGTTCAATCTCATGTCTCCAGACCCGATCCGCAAAACCCCTCCATGT 665
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 643 GAAGACTTCTAAAAGTTCAATCTCATGTCTCCAGACTCGATCCGCAAAACCCCTCCATGT 702
Query 666 TTGGGGCATTACCTATGGGTTATGTTCCTCCCTATAATGGATATGGCTATCATGTACCTG 725
|||| |||||||||||| ||||||||||||| || |||||||||||||||||||| ||||
Sbjct 703 TTGGAGCATTACCTATGAGTTATGTTCCTCCTTACAATGGATATGGCTATCATGTGCCTG 762
Query 726 GAACCTATGGGTACATGCTACCACCTATCCAGACTCAACCTGCATTTCACAATGTGATTT 785
|||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 763 GAACTTATGGCTACATGCTACCACCTATCCAGACTCAACATGCATTTCACAATGTGATTT 822
Query 786 CACCGAACCAAGGTAACGGAAGAGCATTGCTGGGAACCGCTTTGACCGAGTCTGTCCCAC 845
|||| |||||||||||||| || ||||||| ||||||||||||||| |||||||||||||
Sbjct 823 CACCTAACCAAGGTAACGGCAGGGCATTGCAGGGAACCGCTTTGACAGAGTCTGTCCCAC 882
Query 846 CACGTTTAGCCGCCCGTAGAAACTTCCCAACGGCTCTTGGAAATTACGGTTACCATGGTC 905
||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 CACGTTTGGCCCCCCGCAGAAACTTCCCAACGGCTCTTGGAAATTACGGTTACCATGGTC 942
Query 906 TTCAATATCCTATGGCATTTCCTAGAGGGATGATACCTCCTCGCCCCCCTCTAACCACAG 965
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 943 TTCAATATCCTATGGCATTTCCTAGAGGGATGATACCTCCTCGCCTTCCTCTAACCACAG 1002
Query 966 TTTCACCTGGAATTTCTAACAACGGCACATCGATACCTTCCTTGCTTCAAACAGAAGGAC 1025
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1003 TTTCACCTGGAATTTCTAATAACGGCACATCGATACCTTCCTCGCTTCAAACAGAAGGAC 1062
Query 1026 CAGCAGGTGCGAATCTATTTATTTATAACATACCACGAGAATTCGGGGATCAAGAACTCG 1085
|||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||
Sbjct 1063 CAGCAGGTGCGAATCTATTTATTTATAACATACCTCGGGAATTCGAGGATCAAGAACTCG 1122
Query 1086 CAGCTGCGTTTCAACCTTTTGGTAAGGTTCTAAGCGCCAAGGTGTTTGTAGACAAGGCCA 1145
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 CGGCTACGTTTCAACCTTTTGGTAAGGTTCTAAGCGCCAAGGTGTTTGTAGACAAGGCCA 1182
Query 1146 CTGGTATAAGCAAATGTTTCGGATTCATTAGTTATGACTCACAAGCAGCTGCTCAGAACG 1205
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1183 CTGGTATAAGCAAATGTTTCGGATTCATTAGTTATGACTCACAGGCAGCTGCTCAGAACG 1242
Query 1206 CTATTAATACAATGAACGGTTGCCAATTAAGCGGTAAGAAATTGAAAGTCCAGCTTAAGA 1265
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 CTATTAACACAATGAACGGTTGCCAATTAAGCGGTAAGAAATTGAAAGTCCAGCTTAAGA 1302
Query 1266 GAGACAACGGTCAACA--A-CAACA------GAGTAACAAACC-GTTATTTAACGGTTTA 1315
|||||||||||||||| | ||||| |||||| ||||| ||||||||||||||||
Sbjct 1303 GAGACAACGGTCAACAGCAGCAACAACAACAGAGTAA-AAACCCGTTATTTAACGGTTTA 1361
Query 1316 TTAAACTCGTAAAAACCACTGACATCTCTTCATCATTAAGAGTTCGC-G--CGGTTAACG 1372
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1362 TTAAACTCGTAAAAACCACTGACATCTCTTCATCATTAAGAGTTCGCTGTGCGGTTAACG 1421
Query 1373 GCAACTCCGGTTTAGACATTAAGATGGATCTTGATGGAACTGGAGAACAAAAAAT-GTTG 1431
|||| ||||||| ||||| |||||||||||||||||||||||||||||||||| | | ||
Sbjct 1422 GCAAATCCGGTTGAGACACTAAGATGGATCTTGATGGAACTGGAGAACAAAAAGTTGATG 1481
Query 1432 GCCGTTATTAACTAACATTTGCCAAGTCTGATCATGTCATGTGGGTCGTCAGAAATTCTC 1491
||||| ||||||||||||||||||||||||||||||| | || || ||||||||||
Sbjct 1482 GCCGTAATTAACTAACATTTGCCAAGTCTGATCATGT---G-GG-TC---AGAAATTCTC 1533
Query 1492 AATCACTCAGAAAAGCTGTATCTTCCTGCAAAAGGGATTCTCCTCCACTCACTCTTCTTC 1551
||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||
Sbjct 1534 AATCACTCAGAAAAGCTGTATCTTCATGCAAAAGG-ATTCTCTTCCACTCACTCTTCTTC 1592
Query 1552 TATTTTTCT-TTT-CTAAAATTTGCGTCACTACA--ATTTTTGTCTGTCATTCAAAAGTT 1607
||||||||| ||| ||||| |||| ||| | | || ||||| ||||| |||||||
Sbjct 1593 TATTTTTCTCTTTTCTAAACTTTG--TCAATTTGTGACTTATGTCTATCATTGAAAAGTT 1650
Query 1608 CATGTATAAATGTTATGATTATTAACCATTCTAAATTCATTTAT 1651
|||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1651 CATGTATAAATGTTATGATTATTAACCATTATAATTTCATTTAT 1694
> AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-defense
related 1 | chr4:1376306-1379420 REVERSE LENGTH=1777
Length=1777
Score = 289 bits (156), Expect = 7e-77
Identities = 226/261 (87%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 1011 TTCAAACAGAAGGACCAGCAGGTGCGAATCTATTTATTTATAACATACCACGAGAATTCG 1070
||||||| ||||| |||| |||||| ||||| ||||| ||||||||||| || || ||||
Sbjct 1167 TTCAAACCGAAGGTCCAGAAGGTGCAAATCTGTTTATCTATAACATACCTCGGGAGTTCG 1226
Query 1071 GGGATCAAGAACTCGCAGCTGCGTTTCAACCTTTTGGTAAGGTTCTAAGCGCCAAGGTGT 1130
|||||||||||||||| ||||| |||||| |||| |||| ||||| || |||||||| |
Sbjct 1227 GGGATCAAGAACTCGCGGCTGCATTTCAATCTTTCGGTATTGTTCTGAGTGCCAAGGTTT 1286
Query 1131 TTGTAGACAAGGCCACTGGTATAAGCAAATGTTTCGGATTCATTAGTTATGACTCACAAG 1190
|||||||||| ||||||||| |||||||||||||||| || |||| |||||||||||||
Sbjct 1287 TTGTAGACAAAGCCACTGGTGTAAGCAAATGTTTCGGTTTTGTTAGCTATGACTCACAAG 1346
Query 1191 CAGCTGCTCAGAACGCTATTAATACAATGAACGGTTGCCAATTAAGCGGTAAGAAATTGA 1250
| || || |||||||||||| | | ||||| ||| |||| ||| |||||||||||||||
Sbjct 1347 CCGCGGCGCAGAACGCTATTGACATGATGAATGGTCGCCATTTAGGCGGTAAGAAATTGA 1406
Query 1251 AAGTCCAGCTTAAGAGAGACA 1271
|||||||||||||||||||||
Sbjct 1407 AAGTCCAGCTTAAGAGAGACA 1427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81575885625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5