BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470323
Length=1099
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03470.1 | Symbols: | Kinase interacting (KIP1-like) family... 1291 0.0
> AT1G03470.1 | Symbols: | Kinase interacting (KIP1-like) family
protein | chr1:865915-867733 REVERSE LENGTH=1247
Length=1247
Score = 1291 bits (699), Expect = 0.0
Identities = 922/1024 (90%), Gaps = 37/1024 (4%)
Strand=Plus/Plus
Query 27 agaagaagaagaagagagaaACGGCGCCGtttatttattttttgtattttactgtttt-- 84
||||||||||||||| ||||||||||||||||||||| || | ||| || |||||
Sbjct 40 AGAAGAAGAAGAAGA-AGAAACGGCGCCGTTTATTTA--TTGTCTATCTT--GGTTTTCC 94
Query 85 gtg-ttttttG-AGTGGAGAAAGCTTTAAGAAGAGTGAAAGATGGTGATGGACTCATCAA 142
| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 ACGCACCGAGGTTGTGGAGAAAGCTTTAAGAAGAGTGAAAGATGGTGATGGACTCATCAA 154
Query 143 AATGGTGGTGGATTGGGAATCACAACACCACAAATTTCTCTCCTTGGCTTCATTCTACTC 202
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 155 AATGGTGGTGGATTGGAAATCACAACACTACTAATTTCTCTCCTTGGCTTCATTCTACTC 214
Query 203 TCTCTGAATTGGATGAAAAGACAAAAGAAATGCTGAGAGTGATTGATGAGGATGCTGATT 262
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 215 TCTCTGAATTGGATGAAAAGACAAAGGAAATGCTGAGAGTGATTGATGAGGATGCTGATT 274
Query 263 CTTTCGCCGCACGAGCTGAGATGTATTATAAGAAAAGGCCTGAGCTTATAGCTATGGTCG 322
|||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 275 CTTTTGCGGCACGAGCTGAGATGTATTACAAGAAAAGGCCCGAGCTTATAGCTATGGTGG 334
Query 323 AAGAGTTCTACCGTTCACATCGCTCCTTGGCCGAGAGGTACGACTTGTTGAGACCCTCTT 382
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 AAGAATTCTACCGTTCACATCGCTCCTTGGCCGAGAGGTACGACTTGTTGAGACCCTCTT 394
Query 383 CTGTGCACAAACATGGCTC--A----GAGAGTCATGGGAAATCATCAACTTGTGATGAGT 436
||||||| ||||||||||| | |||||||||| |||||||||||||||||||||||
Sbjct 395 CTGTGCATAAACATGGCTCAGACTCGGAGAGTCATGAGAAATCATCAACTTGTGATGAGT 454
Query 437 CTTCTTGGTCTGAGGCTTGTGAGACTCATGAAGAGTATGCGGAGTCTGAAATAGATAACG 496
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 455 CTTCTTGGTCTGAGGCTTGTGAGACTCATGAGGAGTATGCGGAGTCTGAAATAGATAACG 514
Query 497 GTGAAAGCAAATGGGTCGATGAAGGTGAAATCAATGGCATTGTCGAGGAAATGGAATCAT 556
||||||||||||||||||||||| ||||||| |||||||||| |||||||| ||| |||
Sbjct 515 GTGAAAGCAAATGGGTCGATGAAAGTGAAATTGATGGCATTGTTGAGGAAATAGAACCAT 574
Query 557 CGCAAGTCGAATACGGTGAAGCTAATGGAAATTATGAGATGATGAAGGA-AGAGCTAGAA 615
|| |||||| ||| |||||| ||||||||||| |||||||||||| || |||| ||||
Sbjct 575 CGGAAGTCGTTTACAGTGAAGGTAATGGAAATTCTGAGATGATGAA-GATAGAGATAGAG 633
Query 616 AGGCtgagagaggagaataaggtttacagtgaaatggtgagagaaaaagatgaagagaag 675
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 634 AGGCTGAGAGAGGAGAATAAGGTTTACAGTGAAATGGTGAGAGAGAAAGATGAAGAGAAG 693
Query 676 agagaagCTATAAGGCAAATGAGTGTAGCAATACAAATGCTTAAAGAAGAGAACTCAGAG 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 AGAGAAGCTATAAGGCAAATGAGTGTAGCAATACAAATGCTTAAAGAAGAGAACTCAGAG 753
Query 736 CTAAAGCAACGTGTTAC---TACTGTTGTTGCAAGGCGTAACAAGGTAGGTGGTGATTCT 792
|| ||| |||||||||| ||||||||||||||||||||| |||| |||||||||||||
Sbjct 754 CTTAAGAAACGTGTTACCAATACTGTTGTTGCAAGGCGTAATAAGGAAGGTGGTGATTCT 813
Query 793 CAGAGGAAGC--CA--T-T--------T--GAGTTTAAGAAGATTAATCTTCAAGGGTTT 837
|||||||||| || | | | ||||||||||||||||| ||| |||||||
Sbjct 814 CAGAGGAAGCAACAGATGTGGAAGCCATTTGAGTTTAAGAAGATTAAGCTTGAAGGGTTA 873
Query 838 TGGGGGAAAGTAGTAGGAAATTGGG-TCCTCCCAAACACAGATTCTGCTTCTAGAGAGCT 896
|||||||||| | || ||||||| || ||||||||||||||||| |||| | ||||||
Sbjct 874 TGGGGGAAAGGCTTTGGCAATTGGGCTC-TCCCAAACACAGATTCTACTTCCAAAGAGCT 932
Query 897 CATGACTCTTTAGAGAAAACAGAGAGGTCTGAGTGATCAAGAACAGAAACTGAGGAACTT 956
||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 933 CATGACTCTTTAGAGGAGACAGAGAGGTCCGAGTGATCAAGAACAGAAACTGAGGAACTT 992
Query 957 TCTCTAAACATCTTTGTACTCTGTGACAAGTAGGGTATACTCTCAAGTGGTTAGTGTAAG 1016
|||||||| ||||||||||||||||| | ||||||||||||||||| | ||||| |||||
Sbjct 993 TCTCTAAATATCTTTGTACTCTGTGATAGGTAGGGTATACTCTCAACTAGTTAGCGTAAG 1052
Query 1017 GTAT 1020
||||
Sbjct 1053 GTAT 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53865184785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5