BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470330 Length=1025 Score E Sequences producing significant alignments: (Bits) Value AT1G03550.1 | Symbols: | Secretory carrier membrane protein (S... 1548 0.0 AT1G03545.1 | Symbols: | Potential natural antisense gene, loc... 209 4e-53 > AT1G03550.1 | Symbols: | Secretory carrier membrane protein (SCAMP) family protein | chr1:885623-887956 REVERSE LENGTH=1258 Length=1258 Score = 1548 bits (838), Expect = 0.0 Identities = 890/916 (97%), Gaps = 0/916 (0%) Strand=Plus/Plus Query 110 TTGAATAAGTTTCTTTATCTTAAAACAAACGATCTCAAAGAATGGCACGGCACGATCCTA 169 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 138 TTGAATAAGTTTCTTGATCTTAAAACAAACGATCTCAAAGAATGGCACGACACGATCCTA 197 Query 170 ATCCATTTGCTGATGAAGAGATCAATCCTTTTGCGAATAATACAAGTGTTCCTCCTGCGA 229 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 198 ATCCATTTGCTGATGAAGAGATCAATCCTTTTGCGAATCATACAAGTGTTCCTCCTGCGA 257 Query 230 GCAACTCTTATCTCAAGCCACTTCCACCGGAACCTTATGATCGTGGTGCAACCGTTGATA 289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 258 GCAACTCTTATCTCAAGCCACTTCCACCGGAACCTTATGATCGTGGTGCAACCGTTGATA 317 Query 290 TCCCTTTGGATTCTGGCAATGATCTTCGAGCTAAAGAGATGGAACTTCAGGCTAAGGAGA 349 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 318 TCCCTTTGGATTCTGGCAATGATCTTCGAGCTAAAGAGATGGAACTCCAGGCCAAGGAGA 377 Query 350 ACGAACTGAAGCGGAAAGAGCAGGAGCTTAAAAGAAGAGAGGATGCAATAGCGCGAACTG 409 ||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 378 ACGAATTGAAGCGGAAAGAGCAGGAGCTTAAAAGAAGAGAGGACGCAATAGCACGAACTG 437 Query 410 GAGTTGTCATCGAAGAGAAAAATTGGCCGGAGTTTTTCCCTATAATTCATCATGACATTC 469 |||||||||| |||||||| ||||||||||||||||| ||| |||||||||||||||||| Sbjct 438 GAGTTGTCATTGAAGAGAAGAATTGGCCGGAGTTTTTTCCTTTAATTCATCATGACATTC 497 Query 470 CAAATGAGATTCCAATTCATTTACAGAAGATCCAATACGTCGCATTCACCACATTGTTAG 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 498 CAAATGAGATTCCAATTCATTTACAGAAGATCCAATACGTCGCATTCACCACATTGTTAG 557 Query 530 GTTTAGTAGGATGTCTCTTGTGGAATATTGTGGCAGTAACTGTAGCTTGGATCAAAGGAG 589 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 558 GGTTAGTAGGATGTCTCTTGTGGAATATTGTGGCAGTAACTGTAGCTTGGATCAAAGGAG 617 Query 590 AAGGTCCCACTATATGGCTTCTTTCAATCATCTACTTCATTGCTGGGGTACCTGGAGCTT 649 |||||||||||||||||||||| ||||| || |||||| ||||||||||||||||||| | Sbjct 618 AAGGTCCCACTATATGGCTTCTCTCAATAATTTACTTCCTTGCTGGGGTACCTGGAGCGT 677 Query 650 ACGTCTTATGGTACCGTCCTCTTTACCGAGCTACCAGAACTGATAGTGCCCTGAAGTTCG 709 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 678 ACGTCTTATGGTACCGTCCTCTTTACCGAGCTACAAGAACTGATAGTGCCCTGAAGTTTG 737 Query 710 GAGCttttttctttttttACGTGTTTCACATCGCGTTCTGCGGCTTTGCTGCAGTTGCTC 769 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 738 GAGCTTTTTTCTTTTTTTACGTGTTCCACATCGCGTTCTGCGGCTTTGCTGCAGTTGCTC 797 Query 770 CACCAGTCATCTTCCAAGGAAAGTCTCTCACAGGTTTCTTGCCAGCACTTGAGCTTCTAA 829 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 798 CACCAGTCATCTTCCAAGGAAAGTCTCTCACAGGTTTCTTGCCAGCAATCGAGCTTCTAA 857 Query 830 CTACTAATGCTGCAGTCGGGATAATGTATTTCATTGGTGCTGGGTTTTTCTGCATCGAAA 889 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 858 CTACTAATGCTGCAGTCGGGATAATGTATTTCATTGGTGCTGGGTTCTTCTGCATCGAAA 917 Query 890 CACTTCTCAATATCTGGGTCATTCAGCAAGTATATGCATATTTCCGAGGGAGTGGCAAAG 949 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 918 CACTTCTCAATATCTGGGTCATTCAGCAAGTATATGCATACTTCCGAGGGAGTGGCAAAG 977 Query 950 CTGCAGAGATGAAGCGTGAAGCTACAAAATCGACCTTGATGCGTGCACTATGAAGAAAAC 1009 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 978 CTGCAGAGATGAAGCGTGAAGCTACAAAATCGACCTTGATGCGTGCACTATGAAGAAATC 1037 Query 1010 ACTCTTCACCAGAAAA 1025 |||||||||||||||| Sbjct 1038 ACTCTTCACCAGAAAA 1053 Score = 176 bits (95), Expect = 4e-43 Identities = 105/110 (95%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 1 TAAAATGCCTTCGATTTCTCCGGCGCCATTGATTTAGTTTTCTCTCTCTGACTACAAAGT 60 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 TAAAATGCCTTCGATTTCTCTGGCGCCATTGATTTAGTTTTCTCTCTCTGACTACAAAGT 60 Query 61 ACCCATTCGTTGAAACCATTTTCTTCCCATTTTCGATTTCTGTCATAATT 110 | ||||||||| |||||| |||||||||||||||||||||||||| |||| Sbjct 61 ATCCATTCGTTCAAACCAGTTTCTTCCCATTTTCGATTTCTGTCAAAATT 110 > AT1G03545.1 | Symbols: | Potential natural antisense gene, locus overlaps with AT1G03550 | chr1:885941-887906 FORWARD LENGTH=1223 Length=1223 Score = 209 bits (113), Expect = 4e-53 Identities = 135/145 (93%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 591 AGGTCCCACTATATGGCTTCTTTCAATCATCTACTTCATTGCTGGGGTACCTGGAGCTTA 650 ||||||||||||||||||||| ||||| || |||||| ||||||||||||||||||| || Sbjct 757 AGGTCCCACTATATGGCTTCTCTCAATAATTTACTTCCTTGCTGGGGTACCTGGAGCGTA 698 Query 651 CGTCTTATGGTACCGTCCTCTTTACCGAGCTAC---CAGAACTGATAGTGCCCTGAAGTT 707 ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 697 CGTCTTATGGTACCGTCCTCTTTACCGAGCT-CTTGCAGAACTGATAGTGCCCTGAAGTT 639 Query 708 CGGAGCttttttctttttttACGTG 732 |||||||||||||||||||||||| Sbjct 638 TGGAGCTTTTTTCTTTTTTTACGTG 614 Score = 209 bits (113), Expect = 4e-53 Identities = 121/125 (97%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 407 CTGGAGTTGTCATCGAAGAGAAAAATTGGCCGGAGTTTTTCCCTATAATTCATCATGACA 466 ||||||||||||| |||||||| ||||||||||||||||| ||| ||||||||||||||| Sbjct 1103 CTGGAGTTGTCATTGAAGAGAAGAATTGGCCGGAGTTTTTTCCTTTAATTCATCATGACA 1044 Query 467 TTCCAAATGAGATTCCAATTCATTTACAGAAGATCCAATACGTCGCATTCACCACATTGT 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1043 TTCCAAATGAGATTCCAATTCATTTACAGAAGATCCAATACGTCGCATTCACCACATTGT 984 Query 527 TAGGT 531 ||||| Sbjct 983 TAGGT 979 Score = 122 bits (66), Expect = 5e-27 Identities = 68/69 (99%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 732 GTTTCACATCGCGTTCTGCGGCTTTGCTGCAGTTGCTCCACCAGTCATCTTCCAAGGAAA 791 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 521 GTTCCACATCGCGTTCTGCGGCTTTGCTGCAGTTGCTCCACCAGTCATCTTCCAAGGAAA 462 Query 792 GTCTCTCAC 800 ||||||||| Sbjct 461 GTCTCTCAC 453 Score = 119 bits (64), Expect = 6e-26 Identities = 66/67 (99%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 849 GATAATGTATTTCATTGGTGCTGGGTTTTTCTGCATCGAAACACTTCTCAATATCTGGGT 908 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 161 GATAATGTATTTCATTGGTGCTGGGTTCTTCTGCATCGAAACACTTCTCAATATCTGGGT 102 Query 909 CATTCAG 915 ||||||| Sbjct 101 CATTCAG 95 Score = 119 bits (64), Expect = 6e-26 Identities = 66/67 (99%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 528 AGGTTTAGTAGGATGTCTCTTGTGGAATATTGTGGCAGTAACTGTAGCTTGGATCAAAGG 587 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 908 AGGGTTAGTAGGATGTCTCTTGTGGAATATTGTGGCAGTAACTGTAGCTTGGATCAAAGG 849 Query 588 AGAAGGT 594 ||||||| Sbjct 848 AGAAGGT 842 Score = 80.5 bits (43), Expect = 3e-14 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 801 AGGTTTCTTGCCAGCACTTGAGCTTCTAACTACTAATGCTGCAGTCGGG 849 |||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 304 AGGTTTCTTGCCAGCAATCGAGCTTCTAACTACTAATGCTGCAGTCGGG 256 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50234147000 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5