BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470333
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03610.1 | Symbols: | Protein of unknown function (DUF789) ... 2398 0.0
AT4G03420.1 | Symbols: | Protein of unknown function (DUF789) ... 837 0.0
> AT1G03610.1 | Symbols: | Protein of unknown function (DUF789)
| chr1:900887-903003 FORWARD LENGTH=1675
Length=1675
Score = 2398 bits (1298), Expect = 0.0
Identities = 1553/1664 (93%), Gaps = 65/1664 (4%)
Strand=Plus/Plus
Query 1 CCCTCATTTTATGGCTTTACCTTTTATTCTTTTACCTTCTCTTGATTGATCTGACTTGAA 60
||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||| ||
Sbjct 16 CCCTCATTTTATGGCTTTACCTTTTATTCATTTACCTTGTCTCGATTGATCTGACTTCAA 75
Query 61 GATTAGAAATCTCGACGCGTGGCTTCAATTTTTTCTTAGAGAATCACA-TT--------- 110
|||||||||||||||||||||||||| ||||||||| ||||||||||| ||
Sbjct 76 GATTAGAAATCTCGACGCGTGGCTTCCATTTTTTCTCAGAGAATCACATTTAAAAAAAAA 135
Query 111 -------AAAACAATATTCGATCTTTGC-T--TACTCATTGT-CTGTCTTCTCGATTGTA 159
||||||||||||||||||||| | |||||||||| | |||||||||| | |
Sbjct 136 AAACAGAAAAACAATATTCGATCTTTGCTTACTACTCATTGTGC-GTCTTCTCGA-T-T- 191
Query 160 ATCGTTTTCTCCATACAtttttttCTTGAAAGAATCCA--------TC-------T-TTT 203
| || |||||||||| |||||||| || |||||||| || | |||
Sbjct 192 -T-GTAATCTCCATACAATTTTTTCTAGAGAGAATCCATCTCTCTCTCTTTTTTTTCTTT 249
Query 204 GGTTTTGCTTGTCCCTTAAATTCAGCCT-C--CATACATAACGTCAAAGCTCAGATATCT 260
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 250 GGTTTTGCTTGTCCCTTAAATTCAGCCTCCTTCATACATAACGTCAAAGCTCAGATATCT 309
Query 261 GAATAACTCGCTTGCGTGCCTCT-T-TCTCTAAAAGCCCATCTC-TT-T-CT--T-CTCC 312
||||||||||||||||||||||| | |||||||||||||||||| || | || | ||||
Sbjct 310 GAATAACTCGCTTGCGTGCCTCTCTCTCTCTAAAAGCCCATCTCTTTCTCCTCCTCCTCC 369
Query 313 TCCATTGAAGAAG-AA---ACCTTCATAATATTT-CTCAATTACGATCATGGTGAATGGT 367
||||||||||||| || |||||| |||||||| ||||||||||||||||||||||| |
Sbjct 370 TCCATTGAAGAAGAAACCTACCTTCGTAATATTTCCTCAATTACGATCATGGTGAATGTT 429
Query 368 AAAGGGTCAACaaaaaaaTCGAATCTTGATCGATTCCTTCATTGCATAACACCCTTAGTG 427
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 AAAGGGTCAACCAAAAAATCGAATCTTGATCGATTCCTTCATTGCATAACACCCTTAGTG 489
Query 428 CCACCCCAATCTCTCCCCAAGGCGGAGATTAGAACCCTAAATCGATTGTGGCATCCATGG 487
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 490 CCACCCCAATCTCTCCCCAAGACGGAGATTAGAACCCTAAATCGATTGTGGCATCCATGG 549
Query 488 GAGAGAGAAAAGGTTGAGTTTTTCAGGTTGAGTGATTTGTGGGATTGTTATGATGAATGG 547
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GAGAGACAAAAGGTTGAGTTTTTCAGGTTGAGTGATTTGTGGGATTGTTATGATGAATGG 609
Query 548 AGCGCTTATGGAGCTAGCGTCCCTATTCATATTACCAATGGAGAATCTCTTGTTCAATAC 607
|||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||
Sbjct 610 AGCGCTTATGGAGCTAGCGTTCCTATTCATGTTACCAACGGAGAATCTCTTGTTCAATAC 669
Query 608 TATGTTCCTTATCTCTCTGCCATCCAGATTTTCACCTCTCATTCCTCCTTGATCCGATTA 667
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 670 TATGTTCCTTATCTCTCTGCCATCCAGATTTTCACCTCTCATTCCTCCTTGATCCGCTTA 729
Query 668 AGGGAAGAGTCTGAAGATGGGGAATGTGAGGGTAGAGATCCGTTTAGCGATTCAGGTAGC 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 AGGGAAGAGTCTGAAGATGGGGAATGTGAGGGTAGAGATCCGTTTAGCGATTCAGGTAGC 789
Query 728 GATGAGAGTGTCTCTGAGGAAGGACTTGAGAACAACACGCTCTTGCATCCAAATGATCGT 787
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 790 GATGAGAGTGTCTCTGAGGAAGGACTTGAGAACAACACGCTCTTGCATCCAAGTGATCGT 849
Query 788 TTGGGTTATCTTTATCTCCAATACTTTGAGAGATCAGCTCCTTATACCAGAGTTCCTCTG 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 TTGGGTTATCTTTATCTCCAATACTTTGAGAGATCAGCTCCTTATACCAGAGTTCCTCTG 909
Query 848 ATGGATAAGATCAATGAATTGGCTCAAAGATACCCGGGATTGATGTCGTTGAGAAGCGTT 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 ATGGATAAGATCAATGAATTGGCTCAAAGATACCCGGGATTGATGTCGTTGAGAAGCGTT 969
Query 908 GATCTTTCTCCAGCAAGTTGGATGTCAGTAGCGTGGTACCCGATTTACCATATACCAATG 967
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 970 GATCTTTCTCCAGCTAGTTGGATGTCAGTAGCATGGTACCCGATTTACCATATACCAATG 1029
Query 968 GGAAGAACCATTAAAGACTTATCCACTTGTTTCCTCACTTATCACACTCTTTCCTCTTCT 1027
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1030 GGAAGAACCATTAAAGACTTATCCACGTGTTTCCTCACTTATCACACTCTTTCCTCTTCT 1089
Query 1028 TTCCAAGATATGGAACCAGAAGAAAATGGTGGGGACAAGGAGAGGGTGCGGAGGGAAGGG 1087
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1090 TTTCAAGATATGGAACCGGAAGAAAATGGTGGGGACAAGGAGAGAGTGCGGAGGGAAGGG 1149
Query 1088 GAAGATATAACTCTGCTCCCATTCGGGATGGCTACTTACAAGATGCAAGGTGATGTTTGG 1147
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1150 GAAGATATAACTCTGCTCCCATTTGGGATGGCTACTTACAAGATGCAAGGCGATGTTTGG 1209
Query 1148 CTTTCGCAGGACCACGATGATCAAGAGAGATTGGCTTCGCTTTATAGTGTCGCGGATTCT 1207
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1210 CTTTCGCAGGACCACGATGATCAAGAGAGATTGGCTTCGCTTTACAGTGTTGCGGATTCT 1269
Query 1208 TGGCTAAAACAGCTTAGGGTCCAACATCATGACTTCAACTACTTCTGCAGTATGTCAATG 1267
||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1270 TGGCTTAAACAGCTCAGGGTCCAACATCATGACTTCAACTACTTCTGCAATATGTCAATG 1329
Query 1268 ACTCATCGTGGCTAAAACTCGGTTCGATGGCACCATGATGTTTGCTTGTTTCCTCATATA 1327
|||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1330 ACTCATCGTGGCTAAACCTCGGTTGGATGACACCATGATGTTTGCTTGTTTCCTCATATA 1389
Query 1328 TAGTCTAATTCTTGCTTTGTTCTGGAACCGCTTGCGTTTTGTAAAACGCAATCGAGCGAT 1387
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1390 TAGTCTAATTCTTGCTTTGTTCTGGAACCGCTTGCGTTTTGTAAAACGCAATGGAGCGAT 1449
Query 1388 TCGCTTTGCAGTGTTTTGGTTAGAATAGCGTTTGGAGTCTTCTAACCTTTGAGAG--TAT 1445
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1450 TCGCTTTGCAGTGTTTTGGTTAGAATAGCGTTTTGAGTCTTCTAACCTTTGAGAGAGTAT 1509
Query 1446 ATGTCGTATATAGAGTTT-GTTGCTTGTTGAAACAGAGTA-A-TTGATGTTGCTTGTTAA 1502
|||||||||||||||||| ||||||||||||||||||||| | ||| |||||||||||||
Sbjct 1510 ATGTCGTATATAGAGTTTTGTTGCTTGTTGAAACAGAGTACAATTGTTGTTGCTTGTTAA 1569
Query 1503 AAACAGAGTGATTGTTTCTTATAAGTTGAAACATGGTGGAGAGAGAACTTGAGTGTGCCT 1562
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1570 AAACAGAGTGATTGTTTCTTATAAGTTGAAACATGGTGGAGAGAGAACTTTATTGTGCCA 1629
Query 1563 -CGGTACCGTTACTGAAATAGTAATGTAACGAACTAGTCTTGTT 1605
| ||||||||||||||||||||||||||||||||| || ||||
Sbjct 1630 ACAGTACCGTTACTGAAATAGTAATGTAACGAACTAATCATGTT 1673
> AT4G03420.1 | Symbols: | Protein of unknown function (DUF789)
| chr4:1511839-1514030 FORWARD LENGTH=1756
Length=1756
Score = 837 bits (453), Expect = 0.0
Identities = 779/929 (84%), Gaps = 52/929 (6%)
Strand=Plus/Plus
Query 392 CTTGATC-GATTCCTTCATTGCATAACACCCT-TAGTGCCACCCCAATCTCTCCCCAAGG 449
||||| | ||||||||||||||| |||| ||| ||||||||||||||||||| ||||||
Sbjct 412 CTTGA-CAGATTCCTTCATTGCACAACA-CCTGTAGTGCCACCCCAATCTCTATCCAAGG 469
Query 450 CGGAGATTAGAACCCTAAAT-CGATTGTGGCATCCATGGGAGAGAGAAAAGGTTGAGTTT 508
|||||||||| | | ||| |||| |||||||||||||||||| ||||||||||||||
Sbjct 470 CGGAGATTAGGAGTTTGAATAGGATT-TGGCATCCATGGGAGAGACAAAAGGTTGAGTTT 528
Query 509 TTCAGGTTGAGTGATTTGTGGGATTGTTATGATGAATGGAGCGCTTATGGAGCTAGCGTC 568
||||| ||||||||| | ||||||||||||||||||||||| |||||||||||| | ||
Sbjct 529 TTCAGATTGAGTGATCTATGGGATTGTTATGATGAATGGAGTGCTTATGGAGCTGGTGTT 588
Query 569 CCTATTCATAT-TACCAATGGAGAATCTCTTGTTCAATACTATGTTCCTTATCTCTCTGC 627
|| |||| | | | | ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 589 CCAATTCGTCTCT-CTAATGGAGAATCTCTTGTTCAATATTATGTTCCCTATCTCTCTGC 647
Query 628 CATCCAGATTTTCACCTCTCATTCCTCCTTGATCCGATTAAGGGAAGAGTCTGAAGATGG 687
|| |||||||||||||||| ||| ||||||||||| |||||||| || |||||||||||
Sbjct 648 TATTCAGATTTTCACCTCTCGTTCTTCCTTGATCCGCTTAAGGGATGATTCTGAAGATGG 707
Query 688 GGAATG-TGAG----G-GTAGAGATCCGTTTAGCGATTCAG-GT---AGCGAT-GA---- 732
|||| | ||| | ||| ||| | | ||| || | || || || ||| |
Sbjct 708 GGAAAGCAGAGATTCGTTTAGTGATTCATATAGTGA-TGAGAGTGAAAGTGATAAACTTT 766
Query 733 -GAG-TGT-C-TCTGAGGAAGGACTTGAGAACA--ACACGCTCTTGCATCCAAATGATCG 786
||| ||| | ||||| ||||||||| ||||| || | ||||||||||| ||||||||
Sbjct 767 CGAGATGTGCTTCTGATGAAGGACTT--GAACATGACGCTCTCTTGCATCCTAATGATCG 824
Query 787 TTTGGGTTATCTTTATCTCCAATACTTTGAGAGATCAGCTCCTTATAC-CAGAGTTCCTC 845
||||| ||||||||||| ||||||||||||||||||||||||||| | | |||||||||
Sbjct 825 GTTGGGATATCTTTATCTGCAATACTTTGAGAGATCAGCTCCTTATGCTC-GAGTTCCTC 883
Query 846 TGATGGATAAGATCAATGAATTGGCTCAAAGATACCCGGGATTGATGTCGTTGAGAAGCG 905
| ||||||||||||||||||||||||||||| ||||||||| | ||||||||| ||||||
Sbjct 884 TCATGGATAAGATCAATGAATTGGCTCAAAGGTACCCGGGACTAATGTCGTTGCGAAGCG 943
Query 906 TTGATCTTTCTCCAGCAAGTTGGATGTCAGTAGCGTGGTACCCGATTTACCATATACCAA 965
| |||||||| || |||||||||||| | |||||||||||||| ||||||||||| ||||
Sbjct 944 TAGATCTTTCCCCGGCAAGTTGGATGGCGGTAGCGTGGTACCCTATTTACCATATTCCAA 1003
Query 966 TGGGAAGAACCATTAAAGACTTATCCACTTGTTTCCTCACTTATCACACTCTTTCCTCTT 1025
||||||| ||||| ||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 1004 TGGGAAGGACCATCAAAGATTTGTCCACTTGTTTCCTCACTTATCACACTCTTTCATCTT 1063
Query 1026 CTTTCCAAGATATGGAACCAGAAGAAAATGGTGGGGACAAGGAGAGGGTGCGGAGGGAAG 1085
|||||||||||||||| |||||||||||||| ||||| ||||||||| | |||| |||||
Sbjct 1064 CTTTCCAAGATATGGAGCCAGAAGAAAATGGCGGGGAAAAGGAGAGGATCCGGAAGGAAG 1123
Query 1086 GGGAAGATATAACTCTGCTCCCATTCGGGATGGCTACTTACAAGATGCAAGGTGATGTTT 1145
| |||| | ||||| |||| || || ||| | || ||||| ||||||||||| ||||||
Sbjct 1124 GAGAAGGTGTAACTTTGCTTCCTTTTGGGTTAGCCACTTATAAGATGCAAGGCAATGTTT 1183
Query 1146 GGCTTTCGCAGGACCA-CGA--T---GATCAAGAGAGA-TTGGCTT-CGCTT-TATAGTG 1196
|||| ||| | ||| | | | | ||||||||| || || ||| ||||| || ||||
Sbjct 1184 GGCTCTCGGAAGACGATCAAGGTCAAGATCAAGAGCGAGTT--CTTTCGCTTCTA-AGTG 1240
Query 1197 TCGCGGATTCTTGGCTAAAACAGCTTAGGGTCCAACATCATGACTTCAACTACTTCTGCA 1256
| ||||||||||||||||||||||| || |||||||| ||||||||||||||||||| ||
Sbjct 1241 TTGCGGATTCTTGGCTAAAACAGCTAAGAGTCCAACACCATGACTTCAACTACTTCT-CA 1299
Query 1257 GTATGTCAATGACTCATCGTGGCTAAAAC 1285
| | |||| |||| ||||||| ||||
Sbjct 1300 --A-G--AATGGCTCACCGTGGCTGAAAC 1323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79266660555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5