BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470335
Length=1342
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03630.1 | Symbols: POR C, PORC | protochlorophyllide oxidor... 2126 0.0
> AT1G03630.1 | Symbols: POR C, PORC | protochlorophyllide oxidoreductase
C | chr1:907642-909376 FORWARD LENGTH=1394
Length=1394
Score = 2126 bits (1151), Expect = 0.0
Identities = 1269/1327 (96%), Gaps = 4/1327 (0%)
Strand=Plus/Plus
Query 1 TCGGCGAAACTCGAAGACACTGTGACACTCTAGCACCTTCAGTTCCGTACAACAATGGCG 60
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TCGGGGAAAATCGAAGACACTGTGACACTCTAGCACCTTCAGTTCCGTACAACAATGGCT 63
Query 61 CTCCAAGCGGCCTATTCTCTTCTTCCTTCAACCATTTCAATCCAAAAAGAGGGCAAATTC 120
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 64 CTCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGGGCAAATTC 123
Query 121 AATGCTTCTCTAAAGGAGACGACTTTAACTGGTTCTTCATTTTCCAACCATCTTAGAGCC 180
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 124 AATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTTTCAAACCATCTTAGAGCT 183
Query 181 GACAAGATCTCCACACTGTTAACCATCAAGGAACAGAGAAGACA-AAAGCCGCGACTTTC 239
|| ||||| ||||| ||||| ||||||||||||||||||||||| ||| |||||| ||||
Sbjct 184 GAAAAGATATCCACCCTGTTGACCATCAAGGAACAGAGAAGACAGAAA-CCGCGATTTTC 242
Query 240 TACCAGTATTCGTGCACAGACAGTTACAGCCACGCCGCCGGCAAGCGAGGCATCCCCGGA 299
||| ||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||
Sbjct 243 CACCGGTATTCGTGCACAGACAGTTACAGCCACGCCGCCGGCAAACGAAGCATCGCCGGA 302
Query 300 GCAAAAGAAGACTGAGAGAAAAGGCACTGCAGTTATCACTGGAGCTTCGTCTGGTTTAGG 359
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 303 GCAAAAGAAGACTGAGAGAAAAGGCACTGCAGTGATCACTGGAGCTTCGTCTGGTTTAGG 362
Query 360 TTTAGCTACGGCCAAAGCTTTAGCAGACACAGGGAAATGGCATGTGATCATGGCTTGTAG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 363 TTTAGCTACGGCCAAAGCTTTAGCAGACACAGGGAAATGGCATGTGATCATGGCTTGCAG 422
Query 420 GAACTTTCTCAAGGCCGAGAAAGCAGCGAGATCTGTAGGAATGTCTAAGGAAGATTACAC 479
||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 423 GAACTTTCTCAAGGCCGAGAAGGCAGCGAGATCTGTTGGAATGTCCAAGGAAGATTACAC 482
Query 480 TGTGATGCATCTTGATCTTGCTTCGCTTGAAAGCGTGAAGCAGTTCGTTGAAAATTTCCG 539
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 483 AGTGATGCATCTTGATCTTGCTTCGCTTGAAAGCGTGAAGCAATTCGTTGAAAATTTCCG 542
Query 540 GAGAACAGAACAACCCCTCGATGTTCTTGTCTGCAATGCTGCGGTTTACCAACCAACTGC 599
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 543 GAGAACAGAACAACCACTCGATGTTCTTGTCTGCAATGCCGCGGTTTACCAACCAACTGC 602
Query 600 TAAAGAACCATCTTTTACAGCTGAAGGCTTTGAGCTAAGCGTTGGAACCAACCATCTCGG 659
|||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 603 TAAAGAGCCTTCTTTTACAGCTGAAGGCTTTGAGATAAGCGTTGGAACCAACCATCTCGG 662
Query 660 TCACTTTCTTCTTTCAAGATTGCTTCTTGATGACCTGAAAAAATCGGATTATCCATCAAA 719
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 663 TCACTTTCTTCTCTCAAGATTGCTTCTTGATGACCTGAAAAAATCTGATTATCCATCAAA 722
Query 720 ACGTATGATCATCGTAGGATCTATAACAGGAAACACAAATACTTTGGCTGGAAATGTACC 779
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 723 ACGTATGATCATCGTAGGATCTATAACAGGAAACACAAATACTTTGGCTGGGAATGTACC 782
Query 780 GCCAAAGGCAAACCTTGGTGACCTAAGAGGCTTAGCATCAGGATTGAATGGGCAAAACAG 839
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 783 GCCAAAGGCAAACCTTGGAGACCTAAGAGGCTTAGCGTCAGGATTGAATGGGCAAAACAG 842
Query 840 TTCAATGATAGATGGAGGAGAGTTTGATGGAGCAAAGGCTTACAAAGACAGCAAAGTCTG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 843 TTCAATGATAGATGGAGGAGAGTTTGATGGAGCAAAGGCTTACAAAGACAGCAAAGTATG 902
Query 900 CAATATGTTGACAATGCAGGAGCTTCACAGACGTTACCACGAGGAAACCGGAGTCACGTT 959
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 903 CAATATGCTGACAATGCAGGAGCTTCACAGACGTTACCACGAGGAAACAGGAGTCACGTT 962
Query 960 TGCCTCTCTTTACCCTGGTTGCATTGCTACAACAGGGTTGTTCAGAGAACACATACCGTT 1019
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 963 TGCTTCTCTTTACCCTGGTTGCATCGCTACAACAGGGTTGTTCAGAGAACACATACCGCT 1022
Query 1020 GTTTCGGCTTCTTTTTCCGCCTTTTCAAAAGTATATCACCAAAGGTTATGTATCTGAAGA 1079
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1023 GTTTCGGCTTCTTTTTCCGCCTTTTCAAAAGTATATCACCAAAGGTTACGTATCTGAAGA 1082
Query 1080 GGAAGCTGGGAAAAGACTAGCACAGGTTGTGAGTGACCCTAGTCTTGGAAAGTCAGGAGT 1139
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1083 GGAAGCTGGCAAAAGACTAGCACAGGTTGTGAGTGACCCTAGTCTTGGGAAGTCAGGAGT 1142
Query 1140 GTATTGGAGCTGGAACAATAACTCGTCTTCGTTTGAGAATCAGCTCTCTAAAGAAGCAAG 1199
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1143 GTATTGGAGTTGGAACAATAACTCGTCTTCGTTTGAGAATCAGCTTTCTAAAGAAGCAAG 1202
Query 1200 TGATGCAGAGAAGGCAAAGAAACTGTGGGAGGTTAGCGAGAAGCTTGTTGGTTTGGCTTG 1259
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1203 TGATGCGGAGAAGGCAAAGAAACTGTGGGAGGTTAGCGAGAAGCTTGTTGGTTTGGCATG 1262
Query 1260 AAATTAAGATTTTTGATATTCAAATTCATATAGGTTACTATGTTTCT-TGACATGTACCA 1318
|| | |||||||||||||| ||||||||||||| ||||||||||| | |||||||||| |
Sbjct 1263 AACTCAAGATTTTTGATATGCAAATTCATATAGATTACTATGTTT-TGTGACATGTACAA 1321
Query 1319 TAACTAT 1325
||| |||
Sbjct 1322 TAAGTAT 1328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66063917220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5