BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470338
Length=794
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03680.1 | Symbols: ATHM1, TRX-M1, ATM1, THM1 | thioredoxin ... 987 0.0
> AT1G03680.1 | Symbols: ATHM1, TRX-M1, ATM1, THM1 | thioredoxin
M-type 1 | chr1:916819-918064 REVERSE LENGTH=910
Length=910
Score = 987 bits (534), Expect = 0.0
Identities = 704/782 (90%), Gaps = 27/782 (3%)
Strand=Plus/Plus
Query 23 ATCTTCTTC-TTCTGGATATTATTACATTTGGGACTCAAGAAG-AATCGAATCT-T-GAT 78
||||||||| || |||||||||||||||||||||||||||||| |||||||||| | | |
Sbjct 98 ATCTTCTTCGTT-TGGATATTATTACATTTGGGACTCAAGAAGAAATCGAATCTATCG-T 155
Query 79 -TGCT-t--ctct-ctctctctctatctctatctctctctACACAACAATGGCTGCTTTC 133
|| | | | | || ||||||||||||| |||||| |||||||||||||||||||| |
Sbjct 156 GTG-TGTAGAT-TGCT-TCTCTCTATCTCT-TCTCTCGCTACACAACAATGGCTGCTTAC 211
Query 134 ACTTGTACTTCCCGTCCGCCGATTTCAATCCGGTCAGAGATGAGAATCGCTTCCTCGCCG 193
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 212 ACGTGTACTTCCCGTCCGCCGATTTCTATCCGGTCAGAGATGAGAATCGCTTCCTCGCCG 271
Query 194 ACGTGTTCCTTCTCTACTCGACAGATGTTCTCTGTGTTACCTGAATCCTGCGGATTGAGG 253
||| |||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 272 ACGGGTTCCTTCTCTACTCGACAGATGTTCTCTGTGTTGCCGGAATCGAGCGGATTGAGG 331
Query 254 ACTCGCGTTTCTCTCTCTTCGGTTTCGAAGAATTCTAGGGTTTCCCGATTACGACGAGGC 313
|||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 332 ACTCGCGTTTCTCTATCTTCACTCTCGAAGAATTCTAGGGTTTCCCGATTACGACGAGGC 391
Query 314 GTTATCTGCGAAGCCCAGGAAACTGCAACAGGAATTCCAGTGGTCAACGATTCAACATGG 373
|||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 392 GTTATCTGTGAAGCTCAGGACACTGCTACAGGAATTCCAGTGGTCAACGATTCAACATGG 451
Query 374 GAGTCTCTAGTTCTCAAGGCTGATGAGCCTGTGTTTGTCGACTTTTGGGCTCCATGGTGT 433
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 452 GACTCTCTAGTTCTCAAGGCTGATGAGCCTGTGTTTGTCGACTTTTGGGCACCATGGTGT 511
Query 434 GGACCTTGCAAAATGATTGATCCCATTGTCAACGAATTGGCACAACAGTATGCAGGGAAG 493
||||| |||||||||||||||||||||||||||||| | || ||| |||| || || ||
Sbjct 512 GGACCCTGCAAAATGATTGATCCCATTGTCAACGAACTCGCGCAAAAGTACGCCGGCCAG 571
Query 494 TTCAAGTTCTACAAACTTAACACTGATGATTCTCCTTCAACCCCTAGCCAGTATGGTGTT 553
||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||
Sbjct 572 TTCAAGTTCTACAAACTTAACACTGATGAGTCTCCTGCAACCCCTGGCCAGTATGGTGTT 631
Query 554 AGAAGCATCCCAACTATCATGATCTTTGTCAAGGGTGAGAAGAAGGATACAATCATCGGT 613
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 632 AGAAGCATCCCAACTATCATGATCTTTGTCAATGGTGAGAAGAAGGATACAATCATCGGT 691
Query 614 GCAGTGTCTAAATCCATTTTAGCAACCAGCATCGACAAATTCTTGTAATCAAGT-CTATT 672
|| || |||||| || |||||||||||||||| ||||||||||||||| || | ||| |
Sbjct 692 GCTGTCTCTAAAGACACTTTAGCAACCAGCATCAACAAATTCTTGTAATGAACTACTAGT 751
Query 673 AAAGGTCTCTCTTTTCTCTGTATCTCTCAAGTCTGAACCTTTTACCTATCTACTCCCCCA 732
| || ||||||||||||||||||||| | ||| ||||||||||||||||||| |
Sbjct 752 CACTGT-TCTCTTTTCTCTGTATCTCTCGACTCTCTACCTTTTACCTATCTACTC----A 806
Query 733 CTCATCACTGTTCATCTAGACTTGTATGATAATATATGATGTCTCAGATTTTCAGAAATT 792
||| | ||||||||||||||||||||||||||| |||||||||| ||||||||| ||
Sbjct 807 -TCA-C--TGTTCATCTAGACTTGTATGATAATAT--GATGTCTCAGGTTTTCAGAATTT 860
Query 793 GA 794
||
Sbjct 861 GA 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38630059043
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5