BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg470341

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G03700.1 | Symbols:  | Uncharacterised protein family (UPF04...   822    0.0  


> AT1G03700.1 | Symbols:  | Uncharacterised protein family (UPF0497) 
| chr1:920950-921901 FORWARD LENGTH=640
Length=640

 Score =  822 bits (445),  Expect = 0.0
 Identities = 489/511 (96%), Gaps = 0/511 (0%)
 Strand=Plus/Plus

Query  43   AAACTAAACTGATGGTGAAGTTAACGCAGAGATTGGGTGGGTTGGTGCTGCGATTTGCGG  102
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  78   AAACTAAACTGATGGTGAAGTTAACGCAGAGATTGGGTGGGTTGGTACTGCGATTTGCGG  137

Query  103  CATTTTGTGCCGCATTAGGAGCGGTTATCACAATGATCACCAGCCGTGAAAGATCTTCCT  162
            ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  138  CATTTTGTGCCGCGTTAGGAGCGGTTATCGCAATGATCACCAGCCGTGAAAGATCTTCCT  197

Query  163  TCTTTGTCATCTCCCTAGTAGCTAAGTATAGCGATTTGGCTGCGTTTAAGTACTTCGTGA  222
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct  198  TCTTTGTCATCTCCCTAGTGGCTAAGTATAGCGATTTGGCTGCGTTTAAGTACTTTGTGA  257

Query  223  TCGCAAATGCGATTGTGACTGTTTATAGCTTTCTCGTTCTGTTTCTTCCAAAGGAGAGTT  282
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  258  TCGCAAATGCGATTGTGACCGTTTATAGCTTTCTCGTTCTGTTTCTTCCAAAGGAGAGTT  317

Query  283  TATTGTGGAAGTTCGTCGTTGTGTTGGACTTGATGGTGACAATGCTGCTGACGTCAAGCT  342
            |||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct  318  TATTATGGAAGTTCGTAGTTGTGTTGGACCTGATGGTGACAATGCTGCTGACGTCAAGCT  377

Query  343  TATCAGCGGTGGTGGCAGTGGCACAAGTGGGAAAAAGAGGAAACGCAAACGCAGGATGGT  402
            |||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  378  TATCAGCGGCAGTGGCAGTGGCCCAAGTGGGAAAAAGAGGAAACGCAAACGCAGGATGGT  437

Query  403  TGCCAATTTGCGGCCAAGTACCAAGATTTTGTGATCAGATAACCGGAGCTTTAATCGCCG  462
            ||||||| ||||| ||||| || |||||||| |||||||||||||||||| |||||||||
Sbjct  438  TGCCAATATGCGGTCAAGTTCCGAGATTTTGCGATCAGATAACCGGAGCTCTAATCGCCG  497

Query  463  GTTTAGTTGCATTGGTTCTCTACAtttttttGCTCATCTTCTCTATCCACCATGTTGTCG  522
            ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
Sbjct  498  GTTTAGTTGCATTGGTTCTCTACGTTTTCTTGCTCATCTTCTCTATCCACCATGTTGTTG  557

Query  523  ATCCTTTTCTTCTTCGAAAATCGTGAATCAA  553
            |||||||||||||||||||||| ||||||||
Sbjct  558  ATCCTTTTCTTCTTCGAAAATCATGAATCAA  588



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26523629616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5