BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470345
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03730.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1439 0.0
AT4G03600.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 398 7e-110
> AT1G03730.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G03600.1);
Has 50 Blast hits to 50 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:930828-931895
REVERSE LENGTH=1068
Length=1068
Score = 1439 bits (779), Expect = 0.0
Identities = 962/1042 (92%), Gaps = 46/1042 (4%)
Strand=Plus/Plus
Query 1 AGTTCACGCAGTTTCCATGTATAATTCATTTGTTCCTAATTTCCATGTCTGGTCTCTTTT 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 29 AGTTCACGCAGTTTCCATGTAT-ATTCATTTGTTCCTAATTTCCATGTCTGGTCTCTTTT 87
Query 61 -GGAGAAATCAATAAATAAAACGACATTTAAGCGCGTGTTA-TCCACTACAAGCCTCAAA 118
|| |||||||||||||||||||| | ||||||||||| || ||||||||||||||| ||
Sbjct 88 GGGGGAAATCAATAAATAAAACGAAACTTAAGCGCGTG-TACTCCACTACAAGCCTCTAA 146
Query 119 ACTAACGAGTGCA-CAACACGCGCTTTTACATGAGAGTGGGACTCACGTGAACTAATCTA 177
|| |||||||| | |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 147 ACCAACGAGTG-ATTAACACGCGCTTTAACATGAGAGTGGGACTCACGTGAACTAATCTA 205
Query 178 -TTTCCCCAAATCTGAAGACTTTC-C--TTTTGttt-t--t-t-t-t-tt-tGC-tc-tc 223
||||||||||||||||||||||| | |||| ||| | | | | | || | | || ||
Sbjct 206 TTTTCCCCAAATCTGAAGACTTTCACTTTTTTTTTTGTGCTCTCTCTCTTCTTCTTCTTC 265
Query 224 ttcttcttcttcttc-AG--CTTC-GGACAAATTTCATATCACGGAGATTTCAATTTCCC 279
||||||||||||||| || |||| | |||||| ||| |||||||||||||||||||||
Sbjct 266 TTCTTCTTCTTCTTCTAGTTCTTCAGCACAAATCTCAAATCACGGAGATTTCAATTTCCA 325
Query 280 ACAC-AAGaaa-aaaaTAA-CCCTCAATCAAAAATCTCAATCAGATCTCTGATGATGGAT 336
|||| |||||| |||| || |||||||| |||||||||||||||||| | ||||||||||
Sbjct 326 ACACAAAGAAAGAAAA-AATCCCTCAATAAAAAATCTCAATCAGATCGCCGATGATGGAT 384
Query 337 CCAACAGGATCACCAAGAACATCGAATGGCTCTTCTTTATCTCCTCCAAGATCGTACCTT 396
||||||||||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 385 CCAACAGGATCGCCAAGAACATCGAATGG-----C----TCTCCTCCAAGATCGTACCTT 435
Query 397 ATCTTTATGCGAATCATGAGCAAGAGACGGACATGGGTTTGTCTCTTTGTAGCTGTCTAC 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 ATCTTTATGCGAATCATGAGCAAGAGACGGACATGGGTTTGTCTCTTTGTAGCTGTCTAC 495
Query 457 GCGATTCTCTTGGCTTCCTCATGGAACTTTCTCACATCTGTACTCAGCTGGTACAAGCTC 516
||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 496 GCGATTCTCCTGGCTTCCTCATGGAACTTTCTCACATCTGTGCTTAGCTGGTACAAGCTC 555
Query 517 CAGTACACGTCATCGCCGTCTCCGTCGAGATTACCGGCGGTTTACGCGTCTGTGGTGTTA 576
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 556 CAGTACACGTCATCGCCGTCTCCGTCAAGATTACCGGCGGTTTACGCGTCTGTGGTGTTA 615
Query 577 GGAGCTGTGTTTGGAGCCATGTCGATGGTTGCGGCGGCTGCGGTTGCGGTCCCGGCGGTT 636
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 616 GGAGCTGTGTTTGGAGCCATGTCGATGGTTGCGGCGGCTGCGGTTGCGGTTCCGGCGGTT 675
Query 637 ATGGTGATTTGGATATCGGTGGTTGTGTTGCTTGCGTTTTTTGGGAAATCGAGAAGGGTA 696
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 ATGGTGATCTGGATATCGGTGGTTGTGTTGCTTGCGTTTTTTGGGAAATCGAGAAGGGTA 735
Query 697 TTGGTTGTTGAAGCTCGTAAGATTACAAGAGAAGTGTTTGGATTTGTGTTTAAGGTTCTT 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 TTGGTTGTTGAAGCTCGTAAGATTACAAGAGAAGTGTTTGGATTTGTGTTTAAGGTTCTT 795
Query 757 TTGAAAGAAGGCAATGCTGTTGCTGCGGTTTGTGCTGTTTTGGGCTATTTCATTCTTATT 816
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 796 TTGAAAGAAGGCAATGCTGTTGCTGCGGTTTGTGCTGTTTTGGGTTATTTCATTCTTATT 855
Query 817 AGAAAGgattttgattcgatttagggtttttgattttgggatatttccttct-tcttctt 875
||||||||||||||||||||||||||||||||||||||||| |||| ||||| | || ||
Sbjct 856 AGAAAGGATTTTGATTCGATTTAGGGTTTTTGATTTTGGGAAATTTTCTTCTCTTTTTTT 915
Query 876 -tt-tt---ggattagg-ggctttttctttctttcC-GGAAATTTGACGATCATATTGAA 928
|| || |||||||| || ||||||||||||||| ||||||||||| || ||||||||
Sbjct 916 ATTATTATTGGATTAGGTGGGTTTTTCTTTCTTTCCTGGAAATTTGACTATTATATTGAA 975
Query 929 GAAACTCTTTTCTTGTTGCTTCTTGTTTAACTTATTGCTAATGTAGCAATGTATATGTAC 988
||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 976 GAAACTCTTGTCTT-TTGCTTCTTGTTTAACTTGTTGCTAATGTAGCAATGTATATGTAC 1034
Query 989 AATTTATAAACGGAGATGTTCT 1010
| ||||||||||||||||||||
Sbjct 1035 ATTTTATAAACGGAGATGTTCT 1056
> AT4G03600.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G03730.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:1603702-1604508 REVERSE LENGTH=807
Length=807
Score = 398 bits (215), Expect = 7e-110
Identities = 410/501 (82%), Gaps = 26/501 (5%)
Strand=Plus/Plus
Query 380 CTCCAAGATCGTACCTTATCTTTATGC-GAATCATGAGCAAGAGACGGACATGGGTTTGT 438
||||||||||||| | |||||| || | ||||||||| || ||||||||||||||||||
Sbjct 220 CTCCAAGATCGTATCATATCTTCAT-CACAATCATGAGTAAAAGACGGACATGGGTTTGT 278
Query 439 CTCTTTGTAGCTGTCTACGCGATTCTCTTGGCTTCCTCATGGAACTTTCTCACATCTGTA 498
||||| | ||||||||||| |||||| | |||| ||||||||| | || | ||| ||
Sbjct 279 CTCTTCATCGCTGTCTACGCAATTCTCGTATCTTCTTCATGGAACCTCCTGAGATCAGTT 338
Query 499 CTCAGCTGGTACAAGCTCCAGTACACGTCATC----GCCG-----TCTCCGTCGAGATTA 549
|| | |||||||||||| || ||||||||||| | | ||||| || ||||||
Sbjct 339 CTTAACTGGTACAAGCTTCAATACACGTCATCAAATTCAGATTATTCTCCTTCAAGATTA 398
Query 550 CCGGCGGTTTACGCGTCTGTGGTGTTAGGAGCTG-TGTTTGGAGCCATGTCGATGGTTGC 608
|||||||| |||||||| |||||| | || || | |||||||||| ||||||||||| ||
Sbjct 399 CCGGCGGTATACGCGTCGGTGGTGCTCGGTGC-GATGTTTGGAGCTATGTCGATGGTGGC 457
Query 609 GGCGGCTG-CGGTTGCGGTCCCGGCGGTTATGGTGATTTGGATATCGGTGGTTGTGTTGC 667
|| || |||| ||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 458 TGC-TATGACGGTGGCGGTTCCGGCGGTGATGGTGATTTGGATATCGGTGGTGGTGTTGC 516
Query 668 TTGCGTTTTTTGGGAAATCGAGAAGGGTATTGGTTGTTGAAGCTCGTAAGATTACAAGAG 727
|||| || ||||||||||| ||||| || || || ||||||| | |||||||| ||||
Sbjct 517 TTGCCTTCTTTGGGAAATCAAGAAGAGTTTTAGTGGTTGAAGGAAGGAAGATTACGAGAG 576
Query 728 AAG-TGTTTGGATTTGTGTTTAAGGTTCTTTTGAAAGAAGGCAATGCTGTTGCTGCGGTT 786
||| || | ||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 577 AAGTTG-TCGGATTTGTGTTTAAGGTTCTTTTGAAAGAAGGCAATGTTGTTGCTGCTTTT 635
Query 787 TGTGCTGTTTTGGGCT-ATTT-CATTCTTATTAGAA-AGgattttgattcgat-ttaggg 842
||||||||||| | || |||| | | |||||||||| || ||||||| || || ||| ||
Sbjct 636 TGTGCTGTTTTAG-CTTATTTTC-TGCTTATTAGAAGAG-ATTTTGACTC-ATATTAAGG 691
Query 843 tttttgattttgggat-attt 862
|| |||||||| ||| ||||
Sbjct 692 TTCTTGATTTTTAGATTATTT 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49480634795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5