BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470349
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03760.1 | Symbols: | Prefoldin chaperone subunit family pr... 1668 0.0
> AT1G03760.1 | Symbols: | Prefoldin chaperone subunit family
protein | chr1:941062-943377 REVERSE LENGTH=1382
Length=1382
Score = 1668 bits (903), Expect = 0.0
Identities = 1248/1404 (89%), Gaps = 66/1404 (5%)
Strand=Plus/Plus
Query 2 GTCGTCGTCGTTGTGCTTAAACCCTTACCGGAATGGAGCCGCCGGCGAAAGGAACAGTGA 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 26 GTCGTCGTCGTTGTGCTTAAACCCTTACCGGAATGGAGCCGCCGGCGAAAGGAACGGTGA 85
Query 62 CGCCGTTAGCGTCGTTGTTCTCAGAGGAGGAGGCACGGAAAGCAGCAAGCTACGTGGAGG 121
|||||||| | | | || ||||||||||| | || ||||||||||| ||| ||||||
Sbjct 86 CGCCGTTA--G--GAT-TT-TCAGAGGAGGATGTTCGAAAAGCAGCAAGTTACATGGAGG 139
Query 122 AGAAAATCGGAGAGAAGCGAGTAGAGATGAATCGTCTTCAACAGTTCGTCGATGAAAACG 181
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 140 AGAAAATCGGAGAGAAGCGAGTAGAGATGAATCGTCTTCAACAGTACGTCGACGAAAACG 199
Query 182 ACAATCTCATCAATCTCGTCAAGAAGCTTCCCGATCAGTTTCATCACAACGTTATGGTTC 241
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 200 ATAATCTCATCAATCTCGTCAAGAAGCTTCCCGATCAGCTTCATCACAACGTTATGGTTC 259
Query 242 CATTCGGTAAAATGGCTTTTTTCCCAGGTCGATTGATCCATACCAACGAGTGTTTGGTGT 301
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 260 CATTCGGTAAAATGGCTTTTTTCCCAGGTCGATTGATTCACACCAACGAGTGTTTGGTGT 319
Query 302 TGTTGGGGGAGAATTACTATACTGATAGATCATCGAAACAAACTGTTGATTTCTTGAAGA 361
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 320 TGTTGGGAGAGAATTACTATACTGATAGATCATCGAAACAAACTGTTGATTTCCTGAAGA 379
Query 362 GAAGAGACAAGACTTTACAGTCTCAAATTCATTCTCTTAAAGCTGAGATTGAAGATTTTC 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 380 GAAGAGACAAGACTTTACAGTCTCAAATTCATTCTCTTAAAGCTGAGATTGAAGATCTTC 439
Query 422 AAACGGAGGCTTCATTCTTCACCACAACTGCTTCTGAAGCAGCGGAAGGACTTGTTGAGA 481
|||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||
Sbjct 440 AAACGGAGGCTTCATTCTTCACTACAACTGCTTCTGAAGTAGCGGATGGACTTGTTGAGA 499
Query 482 TAAGAGAAGAGTATGTAGAAGAAGATTCATCTGCAACTGTGGT--T-CAGTCAAGTGAAA 538
|||||||||||||||||||||||||||| |||||| |||| || | || ||||||||||
Sbjct 500 TAAGAGAAGAGTATGTAGAAGAAGATTCTTCTGCACCTGTTGTGATACATTCAAGTGAAA 559
Query 539 AAGAGCCTTCTAATATTTCTGGAGGAGAGGCTGAAGAAG---AACTTGAAGACGATGACT 595
||||||||| |||| |||||| ||||||| ||||||||| ||||||||||||||||||
Sbjct 560 AAGAGCCTTGTAATCTTTCTGAAGGAGAGACTGAAGAAGGTGAACTTGAAGACGATGACT 619
Query 596 TTGCAAGAATCATGTCCAGGTTGAATGAACTTGAAATGGAAGAAGAACAGGAGGGTGAAG 655
|||||||||||||| |||||||||||||||||||||| || ||||||| |||||||||||
Sbjct 620 TTGCAAGAATCATGGCCAGGTTGAATGAACTTGAAATAGAGGAAGAACTGGAGGGTGAAG 679
Query 656 ATGGGGGC-GATAGAGGTGAAGAACATTATTCTCCAATAGAAATTTTGGAGGAGAGCCAG 714
|||||| | |||||||||||| | | ||||| || |||||| | |||| ||| ||||
Sbjct 680 ATGGGGATAG-TAGAGGTGAAGATCCTGATTCTTCAGTAGAAAGTGTGGAACAGATCCAG 738
Query 715 CATGATTTGGTGAAAGGAATTAGAGGTGAGACAGACCGTGGTAGGATTGAATATGGGAAA 774
||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||
Sbjct 739 CATGATTTGGTGAAAGGAAGTAGAGGTGAGACAGACCGTGGTAGGGTTGAATACGGGAAA 798
Query 775 CAGGAAACTATCATATCTGTTCCTATGAAAACTTCACGC-CATAGCTCTTCCATTCGCGA 833
|| ||||||| |||||||||||||| ||| |||| || ||||||||||| | | |||
Sbjct 799 CAAGAAACTACCATATCTGTTCCTAACAAAGCTTC-CGGTCATAGCTCTTC-A--C-CGA 853
Query 834 ACCGAGGGTTTCAGAGCCAAGAGTCAAAGCCAAAGTTATTCAAGTGTTACCAGAGACACA 893
| || | ||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 854 ---G-GG-TCTCAGAGCCAAGGGTCGAAGCCAAAATTATTCAAGTGTTACCAGAGACACA 908
Query 894 CCCACACAAAGATCTAGATGATCCGCTGAA-CTGTATTGGACCAATGTCACAATATCTCC 952
||||||||||||||||||||||||||||| | |||| |||||||| ||||||||||
Sbjct 909 TCCACACAAAGATCTAGATGATCCGCTGAATC-GTATCCGACCAATGGCACAATATCTTT 967
Query 953 CCAAAGGAGATCAATCTCATAGCGGAACTGCC-CAGCAAAACGCTGGAACATGGAGAGAC 1011
|||||| || |||||| | | ||||||| || ||||||||||||| |||||||| ||||
Sbjct 968 CCAAAGAAGGTCAATCACGTGGCGGAACC-CCTCAGCAAAACGCTGAAACATGGAAAGAC 1026
Query 1012 TTTCAGGCGACCGCTGCTATTTCCACAGCAAAGGCAAAAACCAATGTTTTAGGACCACAA 1071
|||| | | | | | || | ||||||||||||||||||||||||||
Sbjct 1027 TTTC-G---A--------A---C----G-AATG-CAAAAACCAATGTTTTAGGACCACAA 1065
Query 1072 AATATTGAG--A-A-AC-CC-GAGCCCGAGTTTGATTCTACCAAGGCTTTTACTGGATCA 1125
|| |||||| | | | || |||||||||||||||||||||||||||||||||||||||
Sbjct 1066 AAGATTGAGCCACAGAAGCCAGAGCCCGAGTTTGATTCTACCAAGGCTTTTACTGGATCA 1125
Query 1126 ATCGTAGAGCATGCCCATATTCAAGAGACCAGCACACACAGCCATACGCAGTCTTCTGCG 1185
|||||||||||||||||||||| |||||||||| |||||||||| |||||||||||| ||
Sbjct 1126 ATCGTAGAGCATGCCCATATTCTAGAGACCAGCGCACACAGCCAAACGCAGTCTTCTACG 1185
Query 1186 TCTCAACCGTCTAAACCAGTGTCAAGATTCAAGGCGCAGAGAAGGTAGCCAGTCAGTTCA 1245
||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| ||
Sbjct 1186 TCTCAACCGTCTAAACCAGTGTCGAGATTCAGGGCGAAGAGAAGGTAGCCAGTCAGCTCT 1245
Query 1246 GTGTACAATTTTTTGTTGAGTTGCCTTTAAGATATGTAAGAACTAAGAAGTAAGAACACA 1305
||||||||||||||||||||||||||||| |||||||||||| | ||||||||||
Sbjct 1246 GTGTACAATTTTTTGTTGAGTTGCCTTTATGATATGTAAGAA----G---TAAGAACACA 1298
Query 1306 TGCAAATGTGTGCATC-TTGTAAGCTTACT--ATATACAGTTAATTAACAAAATCTAAAT 1362
|||||||||| ||| | ||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1299 TGCAAATGTGCGCAACCTTGTAAGCTTACTCTATATACAGTTAATTAACAAAATCTACAT 1358
Query 1363 CAAGAAATCTGATATTGTTACTTG 1386
|| |||||||| |||||||||||
Sbjct 1359 AAAAAAATCTGACATTGTTACTTG 1382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68272741200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5