BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470350
Length=1571
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03770.2 | Symbols: RING1B | RING 1B | chr1:944572-947483 FO... 2231 0.0
AT5G44280.2 | Symbols: ATRING1A, RING1A | RING 1A | chr5:178358... 532 3e-150
> AT1G03770.2 | Symbols: RING1B | RING 1B | chr1:944572-947483
FORWARD LENGTH=1659
Length=1659
Score = 2231 bits (1208), Expect = 0.0
Identities = 1473/1594 (92%), Gaps = 45/1594 (3%)
Strand=Plus/Plus
Query 1 GTCCTCCTTTGTTCTCC-TTCTCTCTTTCCATCGGCACCGAAACGAAACAACAAAGGACG 59
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||
Sbjct 24 GTCCTCCTTTGTTCTCCTTTCTCTCTTTCCATCGGCACCGAACCGAAACAACAAAGAACG 83
Query 60 AGGAAATACAAGA-AAGCCCACAAGAGAGATACGTAGAGGGAGAGATAAAGGTCAAAGCT 118
||||||||||| | |||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 84 AGGAAATACAA-ATAAGCCCACAAGAGAGAGACGTAGATGGAGAGATAAAGGTCAAAGCT 142
Query 119 TTATTCTTGTTCCTCTCTCTTCCTAGAAGCAAAGATCACTGTTATCAAACAATCAACAAT 178
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 143 TTATTCTTTTTCCTCTCTCTTCCTAGAAGCAGAGATCACTGTTATCAAACAATCAACAAT 202
Query 179 GCCTTCTTTGAAGAACTTCTCCGCCGCCGAGGAAGAGGATGACCAACTGGGTCTGAACTC 238
|||||| ||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 203 GCCTTCCTTGAAGAGCTTCTCCGCCGCCGAGGAAGAAGATGACCAACTGGGTCGGAACTC 262
Query 239 AGAAGCTGCCAGATTCAATCCCGAAGATGTGGAGAAAGAAGAAGATCTGGATAAAATGGA 298
|||||||| ||||||||||| |||| |||||||||||||||||||| || ||||||||
Sbjct 263 AGAAGCTGAAAGATTCAATCCTGAAGCTGTGGAGAAAGAAGAAGATCCAGACAAAATGGA 322
Query 299 TGAGAAGGACGAAAGTGGTGATGAGGAAGACGACGTGAAACGTGACCAAGTAGAAGCAGA 358
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 323 TGAGAAGGACGAAAGTGGAGATGAGGAAGACGACGTGAAACGTGACCAAGTAGAAGCAGA 382
Query 359 GGATGAGGAAGCGTTAGGAGAAGAAG-A-----AGATTCTAAGGAAAGAAGTCAAGCTTC 412
|||||||||||||||||||||||||| | |||||||||||||||||||||| ||||
Sbjct 383 GGATGAGGAAGCGTTAGGAGAAGAAGAAGTTTCAGATTCTAAGGAAAGAAGTCAATCTTC 442
Query 413 TTCAGAAGGAGAGCAATCAGAATCAGAATAT-TTGTATGTTGATCTAGCGGATATCCGTA 471
||||| ||||||| |||||||||||||||| | || ||||||||||||||||||| |||
Sbjct 443 TTCAGCAGGAGAGTTATCAGAATCAGAATATATGGT-TGTTGATCTAGCGGATATCTGTA 501
Query 472 GGGACGTGCAATGCTCCATATGTTTAGGGATTATAAGGAAAACAAGGACTGTGATGGAAT 531
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 AGGACGTGCAATGCTCGATATGTTTAGGGATTATAAGGAAAACAAGGACTGTGATGGAAT 561
Query 532 GTCTCCACCGGTTTTGCAGAGAGTGCATTGATAAGTCAATGAGATTGGGGAACAATGAGT 591
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 GTCTCCACCGGTTTTGCCGAGAGTGCATTGATAAGTCAATGAGATTGGGGAACAATGAGT 621
Query 592 GTCCTACTTGCAGGAAACATTGTGCAAGCCGACGTTCTTTAAGAGACGACCCAAACTTTG 651
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 GTCCTACTTGCAGAAAACATTGTGCAAGCCGACGTTCTTTAAGAGACGACCCAAACTTTG 681
Query 652 ATGCCTTAATAGCAACTTTATTCGAAAATATTGATCAATTTGAGGAGGAGGAAATGGCTT 711
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||| || ||
Sbjct 682 ATGCCTTAATAGCAGCTTTATTCAAAAATATTGATAAATTTGAGGAGGAGGAATTGAATT 741
Query 712 TTCGTCAAGATGACGAGGCTCGTAATAAGCAGATTCAAGCATCTATAGCTCAAGTATCGC 771
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 TTCGTCAAGATGATGAAGCTCGTAATAAGCAGATTCAAGCATCTATAGCTCAAGTATCGC 801
Query 772 AACGACAATCTGAGGCCCTTGCAAAAAGAAAGTCTTTTGGTAAAGACGCAGCGGTCTTAT 831
||||||||||| ||||||||| ||||||||||||| ||||||||| | ||||| ||||||
Sbjct 802 AACGACAATCTAAGGCCCTTGTAAAAAGAAAGTCTGTTGGTAAAGGCACAGCGATCTTAT 861
Query 832 CAAGATCACGTCGTAGTGGTAGTGGCTCCAGAAGAAGAAGGAACTGCAGAAACATGGAAC 891
| |||||||| ||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct 862 CGAGATCACGACGTAGTGGTGGCGGCTCCAGAAGAAGAAGGAACTGCAGAAACATTGAAC 921
Query 892 AGGATACATCAGAAGCCCATGATGATGATGATCAAAACAAAAGAGGCAAAGATTCTTCTT 951
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 AGGATACATCAGAAGCCAATGATGATGATGATCAAAACAAAAGAGGCAAAGATTCTTCTT 981
Query 952 CAGATGAGCCTTGTGCCGAAATCCTTCTGAGGAAACGAAAAAAGCGCTCTA-CAACTCAG 1010
||||||||||||||| | |||| ||||||||||||| || | ||||||||
Sbjct 982 CAGATGAGCCTTGTG---A---------GAGGCAACGAAAAAAGCGTTC-AGCAACTCAG 1028
Query 1011 CCTTCTTCTTCAAATGCAAACAACAACGATAACTGTGCAGGTAATGGCACAGAGCAGACG 1070
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1029 CCTTCTTCTTCAAATGCAAACAACAACGATAACTGCGCAGGTAATGGCACAGAGCAGACG 1088
Query 1071 CATCAGAGGGACAGCAGAGGAATATCACCTGTGCTTATGTGGAACTCAGAAATACTTGCA 1130
||||||||||||||||||| |||||||||||||||| |||||||||| ||| || |||||
Sbjct 1089 CATCAGAGGGACAGCAGAGTAATATCACCTGTGCTTGTGTGGAACTCGGAACTAATTGCA 1148
Query 1131 TGGGGAAGAGGCGGTACAAGGAGTAACACAAGGCAAGGAAATAATAACCAAGGAGCTATT 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 TGGGGAAGAGGCGGTACAAGGAGTAACACAAGGCAAGGAAATAATAACCAAGGAGCTATT 1208
Query 1191 AGTAAGAGGAATGCTCGCTTGAATAGACTTGTGGAATATCTCGGGAGCTTAGAGGGTAAT 1250
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1209 AGTAAGAGAAATGCTCGCTTGAAAAGACTTGTGGAATATCTCGGGAGCTTAGAGGGTAAT 1268
Query 1251 AGTGTCGAGTTGGATATTCATCTTAAGCTTATCTCGCTGGATACAGAAGGTTTACTAAAC 1310
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1269 AGTGTCGAGTTGGATATTCATCTTAAGCTTGTCTCGCTGGATACAGAAGGTTTACTAAAC 1328
Query 1311 TTACTTGAGCCATATCTTTGTTGCCGGCCCACTTTGCTAGTAAAACAACTCCGCGAA-T- 1368
|||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
Sbjct 1329 TTACATGAGCCATATCTTTGTTTCCGGCCCACTTTGCTAGTTAAACAACTCCGCGAAGTG 1388
Query 1369 A-T-----------GT--G-G-CACGCCAGATGAAATTGAAGGCTGAAGAGGTTGAATTG 1412
| | || | | ||||||| | |||||||||||||||||||||||||||
Sbjct 1389 AGTTCTCTCCCTCTGTATGTGGCACGCCATTTAAAATTGAAGGCTGAAGAGGTTGAATTG 1448
Query 1413 TTTGTGTCTAAAGATGGGGATAGGGTAATTGGGAATAAGACCTCAACAGAGAAGATGCAA 1472
|| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1449 TTGGTGTCTAAAGATGGGGATACGGTCATTGGGAATAAGACCTCAACAGAGAAGATGCAA 1508
Query 1473 AGTCTGCAAGATGATGAAACCTTGTCAAAGCTAAAAGTTGATTGCATTTCGAGCCATGGA 1532
|| |||||||||||||| ||| || ||||||||||||||||||||||||||||| |||||
Sbjct 1509 AGCCTGCAAGATGATGAGACCGTGGCAAAGCTAAAAGTTGATTGCATTTCGAGCAATGGA 1568
Query 1533 TATATGATTGTAGCGTTCCG-AGACAAGCGAATC 1565
||||||||||||| || ||| ||| |||| ||||
Sbjct 1569 TATATGATTGTAGTGTACCGGAGA-AAGCAAATC 1601
> AT5G44280.2 | Symbols: ATRING1A, RING1A | RING 1A | chr5:17835849-17839254
REVERSE LENGTH=1984
Length=1984
Score = 532 bits (288), Expect = 3e-150
Identities = 706/894 (79%), Gaps = 84/894 (9%)
Strand=Plus/Plus
Query 581 GAACAATGAGTGTCCTACTTGCAGGAAACATTGTGCAAGCCGACGTTCTTTAAGAGACGA 640
||| || || |||||| |||||||||| |||||||||||||| |||||| ||||||||||
Sbjct 653 GAATAACGAATGTCCTGCTTGCAGGAAGCATTGTGCAAGCCGGCGTTCTCTAAGAGACGA 712
Query 641 -CCCAAACTTTGATGC-CTTAATAGCAACTTTATTCGA-AAATATTGATCAATT-TGAGG 696
|| ||| |||||||| ||| || || ||||||| | |||||||||| | || |||||
Sbjct 713 TCCGAAA-TTTGATGCTCTT-ATTGCTGCTTTATT-TACAAATATTGAT-AGTTATGAGG 768
Query 697 AGGAGGAAATGGCTTTTCGTC-AAGATGACGA-GGCTCGTAATAAGCAGATTCAAGCATC 754
| |||||| ||||||||| | ||||||| | |||||||||||||||||||||||||||
Sbjct 769 AAGAGGAACTGGCTTTTC-ACGAAGATGA-AATGGCTCGTAATAAGCAGATTCAAGCATC 826
Query 755 TATAGCTCA-AGTATCGCAACGACAATCTGAGGCCCTTGCAAAAAGAA-AGTCTTTTGGT 812
||||||||| | |||||||||||||||||||||| |||| |||||| | ||| |||||
Sbjct 827 TATAGCTCAGA-TATCGCAACGACAATCTGAGGCTCTTGTGAAAAGACGA-TCTCTTGGT 884
Query 813 AAAGACGCAGCGGTCTTA-TCAAGATCAC-GTCGTAGTGGTAGTGGCTCCAGAAGAAGAA 870
||||| ||||| |||||| | | |||||| | |||| || ||||||||||||||| |||
Sbjct 885 AAAGAGGCAGCAGTCTTAATGA-GATCACCG-CGTATTGCTAGTGGCTCCAGAAGGAGAC 942
Query 871 GGAACTGCAGAAACATGGAACAGGATA-C--ATCAGAAGCCCATGA---TGATGAT---G 921
||||| |||||||||||||||| | | | ||||||||| ||||| ||||||| |
Sbjct 943 GGAACAGCAGAAACATGGAACAACAAAACGCATCAGAAGCTCATGAAGATGATGATAATG 1002
Query 922 ATCA-AA-A-CAA-A-AG-A-G-G-CAAAGATTCTTCTTCAGATGAGCCTTGTGCCGAAA 972
|| | || | ||| | || | | | ||||||||| ||||||||||||| | || | |||
Sbjct 1003 ATGATAATAACAACAGAGGAAGAGACAAAGATTCGTCTTCAGATGAGCGTGGTACAGAAG 1062
Query 973 TCCTTCTGAGGAAACGAA-AAAAGCGCTCTACAA--C-T-CAGC-C-------TTCTTCT 1019
||| | || |||||| | |||| || ||||||| | | || | | |||||||
Sbjct 1063 TCCGGCAGAAGAAACGTAGAAAA-CGGTCTACAAGTCGTTCAACACAACACCCTTCTTCT 1121
Query 1020 TCAAATGCAAACAACAACGAT---AACTGTGCAGGTAATGGCACAGAGCAGACGCATCAG 1076
||| ||||||||| ||| || |||||||||| ||| | |||||| || | || ||
Sbjct 1122 TCAGGTGCAAACAAAAACAATGGTAACTGTGCAGATAACGACACAGA--AGT-GTAT-AG 1177
Query 1077 AGGGACAGCAGAGGAATATCACCTGTGCTTATGTGGAA-CTCAGAAATACTTGCATGGGG 1135
|| ||| || ||| ||||| || | |||| ||||||| | | || ||||| || |||||
Sbjct 1178 AG--ACACCAAAGGCATATCTCCCGGGCTTGTGTGGAATCCC-GAGATACTGGCTTGGGG 1234
Query 1136 AAGAGGCGGTACAAGGAGTAACACAAGGCAAGGAAATAATAAC--CAAGGAGCTATTAGT 1193
||||||||| |||||||||||||||||||| || ||||||| | | |||| || ||||
Sbjct 1235 AAGAGGCGGGACAAGGAGTAACACAAGGCATGGGAATAATA-CTTCT-GGAGGTAGTAGT 1292
Query 1194 AAGAG-G-AA----TGCTCGCT-TGAATAGACTTGTGGAATATCT-CGG-G-AGCTTAGA 1243
||||| | || ||| || | |||| | |||||| |||||||| || | ||| ||||
Sbjct 1293 AAGAGTGTAAGGAATGCCCG-TGTGAACAAACTTGTTGAATATCTACGCAGCAGCGTAGA 1351
Query 1244 GGG-TAATAGTGTCGAGTTGGATATTCATCTTAAGCTTATCTCGCTGGATACAGAAGGTT 1302
|| | |||||| ||||||||||||||| | |||||| |||||||||||||| || ||
Sbjct 1352 TGGATC-TAGTGTTGAGTTGGATATTCATGTCAAGCTTGTCTCGCTGGATACAAAATGTA 1410
Query 1303 TACTAAACTTACTTGAGCCATATCTTTGTTGCCGGCCCACTTTGCTAGTAAAACAACTCC 1362
||| | |||||| |||||||||| |||||||| ||||||||||| |||||||| ||||
Sbjct 1411 TACCAGACTTACCACAGCCATATCTCTGTTGCCGACCCACTTTGCTTGTAAAACAGCTCC 1470
Query 1363 GCGAATAT-GTGGCACGCCAGATGAAATT-GAAGGCTGAAGAGGTTGAATTGTT 1414
| |||| | || |||| ||||| | ||| |||| |||||||||||||||||||
Sbjct 1471 GTGAAT-TCGTTGCACTTCAGAT-ACATTTGAAGACTGAAGAGGTTGAATTGTT 1522
Score = 67.6 bits (36), Expect = 3e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 501 ATTATAAGGAAAACAAGGACTGTGATGGAATGTCTCCAC 539
||||||| |||||||||||||||||||||||||||||||
Sbjct 595 ATTATAAAGAAAACAAGGACTGTGATGGAATGTCTCCAC 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77559842025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5