BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470351
Length=2585
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03780.3 | Symbols: TPX2 | targeting protein for XKLP2 | chr... 3576 0.0
> AT1G03780.3 | Symbols: TPX2 | targeting protein for XKLP2 | chr1:947520-951827
REVERSE LENGTH=2539
Length=2539
Score = 3576 bits (1936), Expect = 0.0
Identities = 2277/2432 (94%), Gaps = 61/2432 (3%)
Strand=Plus/Plus
Query 1 TTCTGATTACAGACAGATACATTCTCTCTGAGaaaacaagaaaacaaaataataataaaa 60
||||| |||||||||||||||||| ||||||| || |||||||||||||||||||| |||
Sbjct 19 TTCTGGTTACAGACAGATACATTCCCTCTGAG-AACCAAGAAAACAAAATAATAAT-AAA 76
Query 61 aaaCCCTAATTCCCCGCT-C-C-TCTCTCTCTCACGCTCTCCTTGTTCTGTGATTTTGGT 117
|||||||||||||||||| | | ||||||||||||||||| | ||||||||||| ||
Sbjct 77 AAACCCTAATTCCCCGCTCCACTTCTCTCTCTCACGCTCT-C----TCTGTGATTTTAGT 131
Query 118 ATGGAAGCAACGGCGGGGGAATCAATTAGTACTCTTGTTACGACGATGGTTGATGAGACG 177
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 132 ATGGAAGCAACGGCGGAGGAATCAGTTAGTACTCTTGTTACGACGATGGTTGATGAGACG 191
Query 178 TATGAGTTCTTAGCGCCCCGATGGTTTGATTTCGTTAATGGAGAGACGGAAGATGAGTCT 237
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 192 TATGAGTTCTTAGCGCCTCGATGGTTTGATTTCGTTAATGGAGAGACTGAAGATGAGTCT 251
Query 238 CGCCGAGCAGAGCTCTGGTTTCAATCGGCCTTAAGCTGCGCTCCTTCTCCTTCGGTTCCT 297
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 CGCCGAGCAGAACTCTGGTTTCAATCGGCCTTAAGCTGCGCTCCTTCTCCTTCGGTTCCT 311
Query 298 AGAATCAAAGCAAGGAGATCATTCAAGGTAGAGGCCATGTGCAACTTCAATGAAGAC-GA 356
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||
Sbjct 312 AGAATCAAAGCAAGGAGATCGTTCAAGGTAGAGGCCATGTGCAACTTCAATGAAG-CTGA 370
Query 357 AGAAGAGATACCGCTCAAGGATAATGAGCCATTAGAACCAGTAGCTGCAATTGTTTCTTC 416
||||||| | ||||||||||||| ||||| ||||||||||||| | ||||||||||||
Sbjct 371 AGAAGAG--A-CGCTCAAGGATAAAGAGCCGTTAGAACCAGTAGTTCCAATTGTTTCTTT 427
Query 417 ACAATCGGAGCCTTCTGAGGCCAAGAAAGAAGAAGTTGCTCCTAT-TAAAGCCAGCACAA 475
||||||| |||||||| |||||||||||| ||||||||||||| | |||||| |||||
Sbjct 428 ACAATCGCAGCCTTCTCAGGCCAAGAAAGCAGAAGTTGCTCCT-TCTAAAGCAAGCACTG 486
Query 476 TTAAGCCGTCTCGCAACAGTTCCAAGGACGCAGAGGTCAACAACAAGACCGCAGATGCCA 535
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 487 TTAAGCCGTCTCGCATCAGTTCCAAGGACGCAGAGGTCAACAACAAGACCGTAGATGCCA 546
Query 536 GTAATGCGACGACTG-GTCGGATAGAAGACAAGGCGAACATTCCTCCTGCTTGCACACCC 594
| || ||||||||| | | ||||||||||||| ||||||| |||||||||||||||||
Sbjct 547 GCGATCCGACGACTGAG-CCAATAGAAGACAAGGAGAACATTGCTCCTGCTTGCACACCC 605
Query 595 AAACCACCAATGCAGTTTTCTCTAGGAGG-AAAGTCGGTGGACCCTAAGAAGCAGCAAAC 653
|||||||||||||||||||||||||| || |||||||||||| | |||||||||||||||
Sbjct 606 AAACCACCAATGCAGTTTTCTCTAGG-GGCAAAGTCGGTGGATCTTAAGAAGCAGCAAAC 664
Query 654 TGCTAGAAGGATAGCTAGTCTGCTGAAGAATCCTCCGTCTGCACTTAGGCCTAAAAACCA 713
|||||||| ||||||||||||||||||||| ||| ||| |||| |||||| |||| |
Sbjct 665 TGCTAGAAAGATAGCTAGTCTGCTGAAGAA---TCCATCTACACTAAGGCCT-AAAA--A 718
Query 714 GTCACAGTTGTCTCAAGCCAAAGGCAGTCATCAGAAAAGTGTGAAAAGGGAAACGAGTGT 773
| || ||||||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct 719 --C-CA---GTCTCAAGCCAAAGGCAGTCATCAGAAAAGTGTGAAAGGGGAAACGAATCT 772
Query 774 TAACAATATAGCTAGCACTACCAATCTGATTCAAGAAAATCAAGCCATAAAAAGGCAAAA 833
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 773 TAACAACATAGCTAGCACTACCAATCTGATTCAAGAAAATCAAGCCATCAAAAGGCAAAA 832
Query 834 GCTAGATGATGGAAAATCAAGACAGATTCTCAATCCAAAACCAACAACTCTGCTCCACAA 893
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 833 GCTAGATGATGGAAAATCAAGACAGATTCTCAATCCAAAACCAGCAACTCTGCTCCACAA 892
Query 894 GACAA-AACATGGTCTTGTTAACACTGGTTTCAACGTATGCCCTTCAGTCACTAAGCACA 952
||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 893 GACAAGAA-ATGGTCTTGTTAACACTGGTTTCAACTTATGCCCTTCAGTCACTAAGCACA 951
Query 953 TTCCGAAGGAGAACAGAAAGGTTTATGTCCGTGAGCAAACTGCACCTTTTGTTTCAACTG 1012
||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 952 CTCCGAAGGAAAACAGAAAGGTTTATGTTCGTGAGCAAATTGCACCTTTTGTTTCAACTG 1011
Query 1013 CTGAATTGATGAAGAAGTTCCAAACAAGCACCCGAGACCTGTCATTGCCTCACGGAAACA 1072
||||||||||||||||||||||||||||||| ||||||| | | | | | |
Sbjct 1012 CTGAATTGATGAAGAAGTTCCAAACAAGCACGCGAGACC--T-A-T---T--C-G----- 1056
Query 1073 CTTCTCTTCCACAGAATCGACCTAAGCTGACACTGACAAGGCCAAAGGAACCCGAATTTG 1132
| | ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1057 -------T-C-CAGAATCGACCTAAGCTGACACTGACAAGACCAAAGGAACCCGAATTTG 1107
Query 1133 TGACATCCCAACGAGCTCGTCCTTTGA-ATGTTAAGAGCAGTGCAGAACTTGAGGAAGAG 1191
|||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1108 TGACGTCCCAACGAGCTCGTCCTTTGAGA-GTTAAGAGCAGTGCAGAACTTGAGGAAGAG 1166
Query 1192 ATTTTGGCAAAGATTCCCAAGTTTAAAGCTCGACCTGTGAACAAGAAGATCTTGGCAGCT 1251
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1167 ATGTTGGCAAAGATTCCCAAGTTTAAAGCTCGACCTGTGAACAAGAAGATTTTGGCAGCT 1226
Query 1252 CCAGCTTTGCCTGCACCTCAAAGAAGTACACCACATCTACCAGAATTTCAGGAATTTCAT 1311
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1227 CCAGCTTTGCCTGCACCTCAAAGAAGTACACCACATCTGCCAGAATTTCAGGAATTTCAT 1286
Query 1312 CTTCAAACAATGGCAAGAGCTAACCAGCATGCAGAGACGTCTTCTATAGCTTCAACGGAA 1371
||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 1287 CTTCAAACAATGGCAAGGGCTAACCAGCATGCAGAGACATCTTCAATAGCTTCAACAGAA 1346
Query 1372 GTGTCTAAGCAGCATAATGATCGGAGGCCTCACCTTACTGAACCAAAGAGCCCTGTGCTC 1431
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 1347 GTGTCTAAGCAGCATAATGATCAGAAGCATCACCTTACTGAACCAAAGAGCCCTGTGCTC 1406
Query 1432 CAAACAATGCTACGAGCTCGTCCTACTAAAGCAAAAACTACTGCAGAACTTGAGCAAGAG 1491
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1407 CAAACAATGCTAAGAGCTCGTCCTACTATAGCAAAAACTACTGCAGAACTTGAGCAAGAG 1466
Query 1492 GAACTGGAGAAGGCACCAAAATTCAAAGCAAAACCTTTAAACAAAAAGATATTTGAAAGT 1551
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1467 GAACTGGAGAAGGCACCAAAGTTCAAAGCAAAACCTTTGAACAAAAAGATATTTGAAAGT 1526
Query 1552 AAAGGAGAAATGGGCATCTTTTGCAACACCAAGAAGCACATAACCATACCCCAAGAGTTT 1611
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1527 AAAGGAGAAATGGGTATCTTTTGCAACACCAAGAAGCACATAACGATACCTCAAGAGTTT 1586
Query 1612 CACTTTGCCACAGATGAGAGGATATCACGACCAGATTCTGTCTTAGATATATTCGACAAG 1671
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1587 CACTTTGCGACAGATGAGAGGATATCACGACCAGAATCTGTCTTAGATATATTCGACAAG 1646
Query 1672 CTCTCATTGAACTCCGAATCTTGCCATGAAAAGCCTCTACCAAGGAACACTGCTCCAAAC 1731
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1647 CTCTCACTGAACTCCGAATCTTGCCATGAAAAACCTCTACCAAGGAACACTGCTCCAAAC 1706
Query 1732 CCCTTCAATCTTAAGACAGAAGAACGAGGCGCTGAGAAAGAGAAGAGATTTTATATGGAG 1791
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1707 CCCTTCAATCTTAAGACAGAAGAAAGAGGCGCTGAGAAAGAGAAGAAATTTTATATGGAA 1766
Query 1792 CTCATACATAAAAAATTAGGAGATGAAAAGGCAAGAGTTCCAAAGGCAAACCCATATCCT 1851
||||| |||| ||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1767 CTCATGTATAAGAAATTAGGAGATGTAAAGGCAAGAGTTCCAAAGGCAAATCCATATCCT 1826
Query 1852 TACACGACGGACTATCCAGTGGTACCACCAAAACCAGAACCTAAGCAATGCACACAACCA 1911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1827 TACACGACGGACTATCCAGTGGTACCACCAAAACCAGAACCTAAGCAATGCACACAACCA 1886
Query 1912 GAACCGTTCCAGTTAGAGAGTCTAGTAAGGCACgaagaggaaatgcgaagagaattggaa 1971
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1887 GAACCGTTCCAGTTAGAGAGTCTAGTAAGGCACGAAGAGGAAATGCGAAGAGAAAGGGAA 1946
Query 1972 gagaggaggagagtggagagagaagaagcccagaagaggCTCTTCAAAGCACAACCAGTT 2031
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1947 GAGAGGAGGAGAATGGAGACAGAAGAAGCCCAGAAGAGGCTCTTCAAAGCACAACCAGTT 2006
Query 2032 AAAAAAGAGGACCCAATCCCTGTTCCAGAGAAAGTACGAATGCCCCTCACAGAAATTCAG 2091
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2007 ATAAAAGAGGACCCAATCCCTGTTCCAGAGAAAGTACGAATGCCCCTCACAGAAATTCAG 2066
Query 2092 GAGTTCAATCTTCATGTAGAGCATCGAGCTGTTGAGCGAGCAGATTTTGATCATAAAATT 2151
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2067 GAGTTCAATCTTCATGTAGAGCATCGAGCTGTTGAACGAGCAGATTTTGATCACAAAATC 2126
Query 2152 AAAGAGAAGGAGAATCAATACAAAAGATACCGTGAAGAGAGTGAAGCTGCAAAAATGGTG 2211
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2127 AAAGAGAAGGAGAACCAGTACAAAAGATACCGTGAAGAGAGTGAAGCTGCAAAAATGGTG 2186
Query 2212 GAGGAAGAGAGAGCTCTGAAGCAAATGAGAAAGACAATGGTTCCTCATGCCAGACCTGTG 2271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2187 GAGGAAGAGAGAGCTCTGAAGCAAATGAGAAAGACAATGGTTCCTCATGCCAGACCTGTG 2246
Query 2272 CCTAACTTCAACAAGCCCTTCTTACCTCAGAAGTCCAACAAGGGGACCACAAAAGCAAAA 2331
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2247 CCTAACTTCAACAAACCCTTCTTACCTCAGAAGTCCAACAAGGGGACCACAAAAGCAAAA 2306
Query 2332 TCACCCAATCTTAGAGTGATTAAAAGAACCGAGAGAAGAACCATGATGGCTCGACCAACT 2391
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2307 TCACCCAATCTTAGAGTGATTAAAAGAACCGAGAGAAGAACCATGATGGCTCGACCAACC 2366
Query 2392 GTCTCTGCAGCTACCAGCGCCTCTGCTGGACA 2423
||||||||||||| ||||||||||||| |||
Sbjct 2367 ATCTCTGCAGCTACTAGCGCCTCTGCTGTACA 2398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128327040194
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5