BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470353
Length=1571
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03790.1 | Symbols: SOM | Zinc finger C-x8-C-x5-C-x3-H type ... 2416 0.0
> AT1G03790.1 | Symbols: SOM | Zinc finger C-x8-C-x5-C-x3-H type
family protein | chr1:954525-956097 FORWARD LENGTH=1573
Length=1573
Score = 2416 bits (1308), Expect = 0.0
Identities = 1494/1581 (94%), Gaps = 23/1581 (1%)
Strand=Plus/Plus
Query 1 ACACACATCTCTCAAAACCAAAACACAT-ACAAGC-aaaaaaaCAAGTT--ATA-TAT-T 54
||||| ||| |||||||||||||||||| |||| | ||||||||||||| ||| ||| |
Sbjct 1 ACACAAATCCCTCAAAACCAAAACACATCACAAACAAAAAAAACAAGTTAGATATTATAT 60
Query 55 -ATCATGGATGTCGTTTGTACGGAACATCATATGAGGAAACCAACGGTGGAGATTCCTCC 113
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 61 CATCATGGATGTCGTTTGTACGGAACATCAAATGAGGAAGCCAACGGTGGAGATTCCTCC 120
Query 114 GAGAAAGCTTCTTTTATCTTCCAAGAGTTTTTCTTCTGATTCTTCTTCCCCTCGTTCGCC 173
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 121 GAGAAAGCTTCTTTTATCTTCCAAGAGTTTTCCTTCTGATTCTTCTTCCCCTCGCTCGCC 180
Query 174 GCGTAAACATAACTGGAACAAAAGCAACAAGATCACATCTGAACATGAAGAAGACAACTT 233
||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 GCGTAAACATAACTGGAACAAAAGCAACAAGATTACATCTGAACATGAAGAAG------- 233
Query 234 CAACAACGAAGACAACAACAAG-GAGATTAAAGAGTACTGTTATGACTCCGACTCTGATG 292
||||||||||||||||| || |||| |||||||||||||||||| || ||||||||||
Sbjct 234 --ACAACGAAGACAACAAC-AGAGAGAATAAAGAGTACTGTTATGATTCTGACTCTGATG 290
Query 293 ATCCTTACGCAAGTGATCATTTCCGGATGTTCGAATTCAAGATCCGTCGTTGCACTCGTA 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 ATCCTTACGCAAGTGATCATTTCCGGATGTTCGAATTCAAGATCCGTCGTTGCACTCGTA 350
Query 353 GCCGAAGCCACGATTGGACTGATTGTCCTTTTGCTCATCCCGGTGAAAAAGCTCGCCGTC 412
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 351 GCCGAAGCCACGATTGGACTGATTGTCCTTTTGCTCATCCCGGTGAGAAAGCTCGCCGTC 410
Query 413 GTGATCCTCGTCGCTTTCAATACTCCGGTGAGGTTTGTCCCGAGTTTCGTCGTGGTGGTG 472
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GTGACCCTCGTCGCTTTCAATACTCCGGTGAGGTTTGTCCCGAGTTTCGTCGTGGTGGTG 470
Query 473 ATTGTAGCCGTGGAGATGATTGTGAGTTTGCTCATGGAGTCTTTGAGTGTTGGCTCCATC 532
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 471 ATTGTAGCCGTGGAGATGATTGTGAGTTTGCTCATGGAGTCTTCGAGTGTTGGCTCCATC 530
Query 533 CTATTCGTTACCGTACTGAAGCTTGTAAAGATGGTAAGCACTGTAAAAGGAAAGTCTGTT 592
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 531 CTATTCGTTACCGTACTGAAGCTTGTAAAGACGGTAAACACTGTAAAAGGAAAGTCTGTT 590
Query 593 TCTTTGCTCATTCGCCACGTCAGCTTAGGGTTCTTCCTCCGGAAAACGTTTCCGGCGGCT 652
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct 591 TCTTTGCTCATTCGCCACGTCAGCTTAGGGTTCTTCCTCCGGAGAACGTTTCCGGTGTCT 650
Query 653 CAGCGTCGCCGTCTCCTGCCGCGAAGAATCCGTGTTGTTTGTTTTGTAGCAGCTCTCCCA 712
|||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 651 CAGCGTCGCCTTCTCCTGCGGCGAAGAATCCATGTTGCTTGTTTTGTAGCAGCTCTCCCA 710
Query 713 CGAGCACTCTTTTGGGTAATTTGTCTCATCTTTCTCGATCTCCGTCTCTGTCTCCACCTG 772
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 CGAGCACTCTTTTGGGTAATTTGTCTCATCTTTCTCGATCTCCGTCTCTGTCTCCACCTA 770
Query 773 TGTCTCCGGCTCATAAAGCCGCTGCTTTTTCACGGTTGAGGAACCGCGCCGCATCTGCCG 832
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 771 TGTCTCCGGCTAATAAAGCCGCTGCTTTTTCACGGTTGAGGAACCGCGCCGCTTCTGCCG 830
Query 833 TTTCTGCCGCTGCAGCCGCTGGTTCAGTTAACTATAAAGACGTTTTGAGCGAGCTGGTGA 892
|||| ||||||||||||||||||||| | |||||||||||||||||||||||||| ||||
Sbjct 831 TTTCCGCCGCTGCAGCCGCTGGTTCAATGAACTATAAAGACGTTTTGAGCGAGCTTGTGA 890
Query 893 ATTCGTTGGATTCCATGAGCTTAGCGGAAGCGCTGCAGGCGAGTTCTTCGTCACCGGTTA 952
|||| ||||||||||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 891 ATTCTTTGGATTCCATGAGCTTAGCGGAAGCGCTGCAGGCGAGTTCCTCGTCGCCCGTTA 950
Query 953 CAACTCCGGTTTCCGCTGCAGCTGCCGCGTTTGCCTCGTCCTGCGGTTTGAGCAATCAGC 1012
||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||
Sbjct 951 CAACTCCGGTTTCCGCTGCGGCTGCCGCGTTTGCGTCGTCCTGCGGTCTGAGCAATCAGC 1010
Query 1013 GTCTCCATCTCCAA-AACTTACAACCAAGTAGTCCTTTGCAATTTGCTCTTTCGCCTTCC 1071
||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1011 GTCTCCATCTCCAGCAACA-ACAACCAAGTAGCCCTTTGCAATTTGCTCTTTCGCCTTCC 1069
Query 1072 ACTCCAAGCTACCTAACTAACTCACCTCAGGCGAACTTCTTTAGCGATGATTTCACTCCT 1131
|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1070 ACTCCAAGTTACCTAACTAACTCACCTCAGGCGAACTTCTTCAGTGATGATTTCACTCCT 1129
Query 1132 CGCCGAAGACAGATGAACGATTTCACGGCGATGGCAGCGGTTAGGGAGAAGACTAGCATT 1191
||||| ||||||||||||||||||||||||||| | || ||||||||||| |||| ||||
Sbjct 1130 CGCCGGAGACAGATGAACGATTTCACGGCGATGACGGCCGTTAGGGAGAATACTAACATT 1189
Query 1192 GAGGATGGTTCTTGTGGTGACCCTGATCTTGGATGGGTCAATGATCTCCTGACTTGATGG 1251
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||
Sbjct 1190 GAGGATGGTTCTTGTGGTGACCCTGATCTAGGATGGGTCAATGATCTCTTGACTTGAGGG 1249
Query 1252 ATTGACGGTGGAGAGAAGACGGGAGGGAGATCTGACTTTGAGAATGTAAATTTCGGGGGA 1311
|||||||||||||| | ||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 1250 ATTGACGGTGGAGATTCGCCGGGAGG-AGATCTGACTT-GAGAATGTAAATTTCGGTGGA 1307
Query 1312 GGAGTTTTAATCACATTCATGAATCATGGGAGAATAGTCGGTTCGTAACGGTTTGGTCAA 1371
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1308 AGAATTTTAATCACATTCATGAATCATGGGAGAATAATCGGTTCGTAACGGTTTGGTCAA 1367
Query 1372 TGCATGGAGAGATTGTT-GTTCAAATTTGTTTTGAAGAtttttttttttAGCTAATTCAG 1430
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1368 TGCATGGAGAGATTGTTTGTTCAAATTTATTTTGAAGATTTTTTTTTTTAGCTAATTCAG 1427
Query 1431 AAGTGTCTTGTGTATTGTCGTTTATTTTTTAGAATTTTCTCTGTCTGATGGGATTTTTAC 1490
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1428 AAGTGTCTTGTGTATTGTCGTTTATTTTTTAGAATTTTCTTTTTCTGATGGGATTTTTAC 1487
Query 1491 CAAATAATATGTTGAACTTGTAATATCTTGTGGACTCGGATTGTGCAATGTTTCACCAAT 1550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 CAAATAATATGTTGAACTTGTAATATCTTGTGGACTCGGATTGTGCAATGTTTCACCAAT 1547
Query 1551 TCTATAAATATTTTTCCCTTT 1571
|||||| ||||||||||||||
Sbjct 1548 TCTATAGATATTTTTCCCTTT 1568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77559842025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5