BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470357
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03840.1 | Symbols: MGP | C2H2 and C2HC zinc fingers superfa... 2158 0.0
AT3G45260.1 | Symbols: | C2H2-like zinc finger protein | chr3:... 351 8e-96
AT3G13810.2 | Symbols: IDD11 | indeterminate(ID)-domain 11 | ch... 311 1e-83
> AT1G03840.1 | Symbols: MGP | C2H2 and C2HC zinc fingers superfamily
protein | chr1:967503-970130 REVERSE LENGTH=1686
Length=1686
Score = 2158 bits (1168), Expect = 0.0
Identities = 1429/1548 (92%), Gaps = 45/1548 (3%)
Strand=Plus/Plus
Query 1 ATGACAACTGAAGATCAGACAATTTCAAGTAGTGGAGGATATGTCCAAAGCTCATCAACA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 ATGACAACTGAAGATCAGACAATTTCAAGTAGTGGAGGATATGTCCAAAGCTCATCAACA 132
Query 61 ACTGATCATGTTGATCATCATCATCATGA--A-CATGACTCCCTTAATCCTCCTCTTGTC 117
||||||||||||||||||||||||||||| | ||||| ||||| |||||||||||||||
Sbjct 133 ACTGATCATGTTGATCATCATCATCATGATCAACATGAATCCCTCAATCCTCCTCTTGTC 192
Query 118 AAGAAGAAGAGAAACCTCCCTGGAAATCCTGATCCAGAAGCCGAGGTCATAGCTCTATCC 177
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 193 AAGAAGAAGAGAAACCTCCCTGGAAATCCTGATCCAGAAGCTGAGGTCATAGCTCTATCT 252
Query 178 CCAAAGACACTTATGGCCACAAATCGATTCCTATGCGAGATATGTGGAAAAGGTTTTCAA 237
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 253 CCAAAGACACTTATGGCCACAAATCGTTTCCTCTGCGAGATATGTGGAAAAGGGTTTCAA 312
Query 238 AGAGACCAGAATCTACAGCTTCACCGTCGAGGACACAACCTCCCATGGAAGCTAAAGCAG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 AGAGACCAGAATCTACAGCTTCACCGTCGAGGACACAACCTCCCATGGAAGCTAAAGCAG 372
Query 298 AGGACAAGCAAAGAAGTAAGAAAACGAGTGTATGTATGTCCAGAGAAGAGTTGCGTCCAC 357
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 373 AGGACGAGCAAAGAAGTAAGGAAACGAGTGTATGTATGTCCAGAAAAGAGTTGCGTCCAC 432
Query 358 CACCATCCGACAAGGGCTCTCGGTGACCTTACCGGCATTAAGAAACATTTTTGTCGGAAA 417
||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 433 CACCATCCGACGAGGGCACTTGGTGATCTTACCGGCATTAAGAAACATTTTTGTCGGAAA 492
Query 418 CATGGCGAGAAAAAGTGGAAGTGTGAGAAATGCGCCAAGAGATATGCAGTCCAATCTGAT 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 CATGGCGAGAAAAAGTGGAAGTGTGAGAAATGCGCCAAGAGATATGCAGTCCAATCTGAC 552
Query 478 TGGAAGGCTCATTCCAAGACTTGTGGGACTAGAGAGTATAGATGCGACTGTGGTACAATT 537
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 553 TGGAAGGCTCATTCCAAGACTTGTGGGACTAGAGAATATAGATGCGACTGTGGTACAATT 612
Query 538 TTCTCCAGGAGAGACAGCTTCATTACACATAGAGCATTCTGTGACGCTTTAGCAGAAGAA 597
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 613 TTCTCCAGGAGAGACAGCTTCATTACACATAGAGCGTTCTGTGACGCTTTAGCAGAAGAA 672
Query 598 ACCGCTAGGCTAAACGCAGCCTCACATCTCAAAAGCCTTGCTGCAACCGCTGGTAGTAAT 657
||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||
Sbjct 673 ACCGCTAGGCTAAACGCAGCCTCGCATCTCAAAAGCTTTGCCGCAACCGCTGGTAGTAAT 732
Query 658 CTAAACTATCATTATCTCATGGGCACACTTATCCCATCACCATCA-TCACAACCACCACC 716
||||||||||||||||||||||| ||||||||||||||||||||| | || || ||||||
Sbjct 733 CTAAACTATCATTATCTCATGGGGACACTTATCCCATCACCATCACT-ACCACAACCACC 791
Query 717 GTCGTTTCCATTCGGACCACCGCAACCGCAACATCACCACCA--AC-ATTTCCCTATCCC 773
||||||||| |||||||||||||||||||||||||| ||||| || | ||||| ||| |
Sbjct 792 GTCGTTTCCGTTCGGACCACCGCAACCGCAACATCATCACCACCACCAATTCCCAATCAC 851
Query 774 AACCACCACCTTCGATCATCATCATCATCAAGACGTCATGAAACCTGCGTCTTCGCTCTC 833
||||| || |||||||||||| | |||||||||||||| |||||| |||||||
Sbjct 852 AACCAACAACTTCGATCATCA--A-------GACGTCATGAAACCAGCGTCTACGCTCTC 902
Query 834 TTTATGGAT-GGGAGGAAATATTAACCATCATCAGCAGGTGACCATCGAGGACCGTATCG 892
||||||| | ||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 903 TTTATGG-TCGGGAGGAAATATTAATCATCATCAGCAAGTGACCATCGAGGACCGTATGG 961
Query 893 CACCGCAGCCGCATTCGCCA-AACGAGGATTACAATTGGGTTTTCGGAAACGCGAATAAT 951
| |||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 962 CGCCGCAGCCGCATTCACCGCAA-GAGGATTACAATTGGGTTTTCGGAAACGCGAATAAT 1020
Query 952 CGCGGTGAGCTAATAACGACGAGCGATTCACTCATTACACATGACAATAATATTAATATC 1011
| ||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1021 CACGGCGAGTTAATAACGACGAGCGATTCACTCATTACTCATGACAATAATATTAATATC 1080
Query 1012 GTCCAGAGTAAGGAAAACACAAACGCGGCTACTTCTCTTTCCGTGCCTTCTCTTTTTAGC 1071
|||||||||||||||||| | |||| ||| ||||||||||||||||||||||||||||||
Sbjct 1081 GTCCAGAGTAAGGAAAACGCTAACGGGGCAACTTCTCTTTCCGTGCCTTCTCTTTTTAGC 1140
Query 1072 AGCGTCGACCAAATTACCCAAGACGCAAACGCGGCTTCTG---C------AAACATGTCA 1122
||||| |||||||||||||||||||||||||| ||||||| | ||| |||||
Sbjct 1141 AGCGTTGACCAAATTACCCAAGACGCAAACGCTGCTTCTGTGGCTGTTGCAAATATGTCG 1200
Query 1123 GCGACTGCGTTACTTCAAAAAGCGGCTCAGATGGGATCGACTTCTTCTACGTCACCGACG 1182
|||||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |||
Sbjct 1201 GCGACTGCGTTACTCCAAAAAGCTGCTCAGATGGGAGCGACTTCTTCTACGTCACCAACG 1260
Query 1183 ACGACAATCACCACCGACCAATCAGGGTATCTTCAGAGTTTTGCGTCGAAAATCTCCGAC 1242
||||| || || ||||||||||||| |||||||||||||||||| | || ||
Sbjct 1261 ACGACGATTACTACCGACCAATCAGCGTATCTTCAGAGTTTTGC----A---TC---GA- 1309
Query 1243 CAGAGTAATCAGATTGTAGAAGATGGTGGCAGCGACAAGTTCTTCGCTTTGTTTGGATCG 1302
|||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||
Sbjct 1310 -AGAGTAATCAGATTGTAGAAGATGGTGGCAGCGACAGGTTCTTTGCTTCGTTTGGATCG 1368
Query 1303 AACAGTGTCGAGTTAATGAGTAATAATAATAACGGTCTTCATGAGATCGGGAACCCTAGA 1362
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1369 AACAGTGTCGAGTTAATGAGTAATAATAATAACGGTCTTCACGAGATCGGGAACCCTAGA 1428
Query 1363 AACGGTGTTAGGGTCGTTTCGGGGATTGATGAATTACAGAATTACCCTTGGAAGCGTAGA 1422
||||| |||| ||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1429 AACGGCGTTACGGTCGTTTCGGGGATGGGTGAATTACAGAATTACCCTTGGAAGCGTAGA 1488
Query 1423 AGAGTTGAGATTGGGAACGCAGGAGGAGGAGGTGGGCAAACTCGGGATTTCCTAGGGGTT 1482
|||||||| |||||||| || ||||||||||| | |||||||||||||| || ||||||
Sbjct 1489 AGAGTTGATATTGGGAATGCGGGAGGAGGAGG-G--CAAACTCGGGATTTTCTTGGGGTT 1545
Query 1483 GGTGTTCAAACAGTGTGCCATTCTTCCTCTATCAATGGATGGATTTGA 1530
||||| |||||| | |||||||||||||||||||||||||||||||||
Sbjct 1546 GGTGTACAAACAATATGCCATTCTTCCTCTATCAATGGATGGATTTGA 1593
> AT3G45260.1 | Symbols: | C2H2-like zinc finger protein | chr3:16596381-16598698
REVERSE LENGTH=1885
Length=1885
Score = 351 bits (190), Expect = 8e-96
Identities = 395/492 (80%), Gaps = 21/492 (4%)
Strand=Plus/Plus
Query 117 CAAGAAGAAGAGAAACCTCCCTGGAAATCCTGATCCAGAAGCCGAGGTCATAGCTCTATC 176
||||| ||||||||| ||||| |||||||| |||||||| || || ||||| ||||||||
Sbjct 262 CAAGAGGAAGAGAAATCTCCCGGGAAATCCAGATCCAGATGCAGAAGTCATCGCTCTATC 321
Query 177 CCCAAAGACACTTATGGCCACAAATCGATTCCTATGCGAGATATGTG-GA-AAAGGTTTT 234
||||| | || ||| | || ||||||||| | |||||| | | || | ||||| |||
Sbjct 322 ACCAAACTCCCTCATGACAACTAATCGATTCATCTGCGAGGT-T-TGCAACAAAGGATTT 379
Query 235 CAA-AGAGACCAGAATCTACAGCTTCACCGTCGAGGACACAACCTCCCATGGAAGCTAAA 293
|| ||||||||||| || ||||||||||| |||| || ||||| ||||||||||||||
Sbjct 380 -AAGAGAGACCAGAACCTTCAGCTTCACCGGAGAGGCCATAACCTTCCATGGAAGCTAAA 438
Query 294 GCAGAGGACAAGCAA--AG-AAGT-AAGAAAACGAGTGTATGTATGTCCAGAGAAGAGTT 349
||| ||||||| ||| || |||| ||||||| |||||| | ||||||||||||| ||
Sbjct 439 GCAAAGGACAAACAAGGAGCAAGTGAAGAAAA-AAGTGTACATCTGTCCAGAGAAGACTT 497
Query 350 GCGTCCACCACCATCCGACAAGGGCTCTCGGTGACCTT-ACCGGCATTAAGAAACATTTT 408
|||| ||||| | ||| | | || || ||||| ||| || || |||||||| |||||
Sbjct 498 GCGTACACCATGACCCGGCCCGAGCCCTTGGTGA-CTTAACTGGAATTAAGAAGCATTTC 556
Query 409 TGTC-GGAAACATGGCGAGAAA-AAGTGGAAGTGTGAGAAATGCGCCAAGAGATATGCAG 466
| | |||||||||| || ||| |||||||| ||||| || || |||||| |||||| |
Sbjct 557 AG-CAGGAAACATGGTGA-AAAGAAGTGGAAATGTGACAAGTGTTCCAAGAAATATGCTG 614
Query 467 TCCA-ATCTGATTGGAAGGCTCATTCCAAGACTTGTGGGACTAGAGAGTATAGATGCGAC 525
| || || |||||||| |||||| ||||| |||||| |||| ||| || ||||| |||
Sbjct 615 T-CATGTCCGATTGGAAAGCTCATAGCAAGATTTGTGGTACTAAAGAATACAGATGTGAC 673
Query 526 TGTGGTACAAT-TTTCTCCAGGAGAGACAGCTTCATTACACATAGAGCATTCTGTGACGC 584
|||||||| | ||| ||||||| ||| || ||||| |||||||||||||||||||||||
Sbjct 674 TGTGGTACCCTCTTT-TCCAGGAAAGATAGTTTCATCACACATAGAGCATTCTGTGACGC 732
Query 585 TTTAGCAGAAGA 596
|||||| |||||
Sbjct 733 TTTAGCTGAAGA 744
> AT3G13810.2 | Symbols: IDD11 | indeterminate(ID)-domain 11 |
chr3:4544364-4547513 FORWARD LENGTH=1898
Length=1898
Score = 311 bits (168), Expect = 1e-83
Identities = 381/481 (79%), Gaps = 26/481 (5%)
Strand=Plus/Plus
Query 131 ACCTCCCTGGAAATCCTG-ATCCAGAAGCCGAGGTCATAGCTCTATCCCCAAAGACACTT 189
|||| | ||||||| ||| | |||||| | || || ||||||||||| ||||| |||||
Sbjct 363 ACCTTCTTGGAAATTCTGTACCCAGAATCAGAAGTGATAGCTCTATCACCAAAAACACTA 422
Query 190 ATGGCCACAAATC-GATTCCTATGCGAGATATGTG-GA-AAAGGTTTTCAAAGAGACCAG 246
||||| ||||| | ||||| | || || | || || | |||||||||||||||||||||
Sbjct 423 ATGGCAACAAA-CAGATTCGTGTGTGA-A-ATCTGCAACAAAGGTTTTCAAAGAGACCAG 479
Query 247 AATCTACAGCTTCACCGTCGAGGACACAACCTCCCATGGAAGCT-AAAGCAGAGGA-C-A 303
|||||||||||||| | |||| ||||| || ||||||||||| ||| || || | | |
Sbjct 480 AATCTACAGCTTCATAGAAGAGGTCACAATCTGCCATGGAAGCTGAAA-CAAAG-ATCCA 537
Query 304 AGCAAAGAAGTAAGAA--AACGA--GTGTATGTATGTCCAGA-GAAGAGTTGCGTCCACC 358
| ||||||||| | || || || ||||||||||||||||| | | || || |||||||
Sbjct 538 A-CAAAGAAGTGATAAGGAA-GAAAGTGTATGTATGTCCAGAAGCA-AGCTGTGTCCACC 594
Query 359 ACCATCCGA-CAAGGGCTCTCGGTGACCTTA-CCGGCATTAAGAAACATTTTTGTCGGAA 416
| |||| | | || |||||||||||| ||| |||| || ||||| ||||| ||| | ||
Sbjct 595 ATGATCC-ATCTAGAGCTCTCGGTGAC-TTAACCGGAATCAAGAAGCATTTCTGTAGAAA 652
Query 417 ACATGGCGAGAAAAAGTGGAAGTGTGAGAAATGCGCCAAGAGATATGCAGTCCAATCTGA 476
|||||| ||||| |||||||| ||||| || || | |||| |||||| || ||||| ||
Sbjct 653 ACATGGTGAGAAGAAGTGGAAATGTGATAAGTGTTCAAAGAAATATGCTGTTCAATCAGA 712
Query 477 TTGGAAGGCTCATTCCAAGACTTGTGGGACTAGAGAGTATAGATGCGACTGTGGTACAAT 536
||| ||||||||||| ||||||||||| || | ||| || ||||| |||||||| || |
Sbjct 713 TTGCAAGGCTCATTCTAAGACTTGTGGCACCAAAGAATACAGATGTGACTGTGGCACTCT 772
Query 537 -TTTCTCCAGGAGAGACAGCTTCATTACACATAGAGCATTCTGTGACGCTTTAGCAGAAG 595
||| || ||||| || || ||||| || ||||||||||| ||||| || || || ||||
Sbjct 773 CTTT-TCTAGGAGGGATAGTTTCATAACTCATAGAGCATTTTGTGAAGCATTGGCTGAAG 831
Query 596 A 596
|
Sbjct 832 A 832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75501619680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5