BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg470358

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G03850.1 | Symbols:  | Glutaredoxin family protein | chr1:97...   732    0.0  


> AT1G03850.1 | Symbols:  | Glutaredoxin family protein | chr1:976097-977761 
REVERSE LENGTH=887
Length=887

 Score =  732 bits (396),  Expect = 0.0
 Identities = 459/488 (94%), Gaps = 10/488 (2%)
 Strand=Plus/Plus

Query  1    AAACTAACCCAACTACACAAGtctctctctctcttttccca--tctctctccctctcttt  58
            |||| ||||||||||||||||  ||||||||||||||||||  |||| ||| ||||||||
Sbjct  1    AAACGAACCCAACTACACAAG--TCTCTCTCTCTTTTCCCATTTCTCCCTCTCTCTCTTT  58

Query  59   gtctctctAACATCAATTATGCAAAAAGCAATAAGACCATACGAGTCATCGTGGACGAAG  118
            ||||||||| ||||||||||||||||||||||  |||||||||||||| |||||||||||
Sbjct  59   GTCTCTCTATCATCAATTATGCAAAAAGCAATTCGACCATACGAGTCACCGTGGACGAAG  118

Query  119  ACCGTACCGGGCAATAGCATTTTCCTTTCAAAGAATGAAGATAAA-C--catcatcatca  175
            ||||| |||||||||||||||||||||| |||||||||||||||| |  |||||||||||
Sbjct  119  ACCGTGCCGGGCAATAGCATTTTCCTTTTAAAGAATGAAGATAAACCATCATCATCATCA  178

Query  176  tcatcattatcatggttaacatcagcatcaCCAAAGCCAACATCTTTAAGCACTAAGAGA  235
            ||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||
Sbjct  179  TCATCATTATCATGGTTAACATCAGGATCACCAAAGCCAACATCTATAAGCAATAAGAGA  238

Query  236  TCAAGCAACCTAGTGGTGATGGAGAATGCTGTGGTGGTGTTTGCAAGGAGAGGCTGTTGT  295
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  239  TCAAGCAACCTAGTTGTGATGGAGAATGCTGTGGTGGTGTTTGCAAGGAGAGGCTGTTGT  298

Query  296  ATGGGACACGTGGCGAAACGGTTGCTACTGACACATGGCGTGAATCCATTGGTGGTTGAG  355
             ||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||
Sbjct  299  TTGGGACACGTGGCAAAACGGCTGCTACTGACACATGGCGTGAATCCAGTGGTGGTTGAG  358

Query  356  ATTGGTGAAGAAGACAACAACACCAACTACGACAATATCATAAGTGATAAAGAGAAATTA  415
            |||||||||||||||||| | | |||||||||||||||| ||||||||||||||||||||
Sbjct  359  ATTGGTGAAGAAGACAAC-A-A-CAACTACGACAATATCGTAAGTGATAAAGAGAAATTA  415

Query  416  CCTATGATGTACATAGGAGGAAAGTTGTTTGGAGGATTGGAAAATCTGATGGCGGCTCAT  475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  416  CCTATGATGTACATAGGAGGAAAGTTGTTTGGAGGATTGGAAAATCTGATGGCTGCTCAT  475

Query  476  ATTAATGG  483
            ||||||||
Sbjct  476  ATTAATGG  483



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28432527202


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5