BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470361
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03860.1 | Symbols: ATPHB2, PHB2 | prohibitin 2 | chr1:97930... 1781 0.0
AT2G20530.1 | Symbols: ATPHB6, PHB6 | prohibitin 6 | chr2:88419... 472 5e-132
> AT1G03860.1 | Symbols: ATPHB2, PHB2 | prohibitin 2 | chr1:979308-981885
REVERSE LENGTH=1280
Length=1280
Score = 1781 bits (964), Expect = 0.0
Identities = 1153/1237 (93%), Gaps = 41/1237 (3%)
Strand=Plus/Plus
Query 2 TTTCTCATTTCTAAAACCCTAAGCTTCGCCGGCAGCTCCGATCGTGATCTTTCATAAACC 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 21 TTTCTCATTTCTAAAACCCTAAGCTTCGCCGGCAGCTCCGATCGTGATCTTTCATAAATC 80
Query 62 CTACCATCGCCGGT-GATTAAGAGCTGAGCTCAGGAAATGAGTTTCAACAAAGTTCCCAA 120
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CTACCATCGCC-GTCGATTAAGAGCTGAGCTCAGGAAATGAGTTTCAACAAAGTTCCCAA 139
Query 121 CATTCCTGGATCTCCTGCTCTCTCTGCCCTTCTTAAGGTCAGTGTTATTGGTGGCCTTGG 180
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 140 CATTCCTGGAGCTCCTGCTCTCTCTGCCCTTCTTAAGGTCAGCGTTATTGGTGGGCTCGG 199
Query 181 TGTCTATGCCCTTACTAATAGTCTCTACAATGTCGATGGAGGACACCGTGCTGTCATGTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 TGTCTATGCCCTTACTAATAGTCTCTACAATGTCGATGGAGGACACCGTGCTGTCATGTT 259
Query 241 CAACCGATTAACTGGTATCAAGGAAAAGGTATACCCAGAGGGCACACATTTTATGATGCC 300
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||
Sbjct 260 CAACCGATTAACTGGTATCAAGGAAAAGGTGTACCCAGAAGGCACACATTTTATGGTGCC 319
Query 301 ATGGTTTGAAAGGCCAATCATCTATGACGTTCGTGCACGACCTTATCTTGTAGAGAGCAC 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 320 ATGGTTTGAAAGGCCAATCATCTATGACGTTCGTGCACGACCTTACCTTGTAGAGAGCAC 379
Query 361 CACCGGTAGTCATGACCTTCAGATGGTGAAAATTGGACTAAGGGTTCTCACACGTCCCAT 420
||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 380 CACTGGTAGTCATGATCTTCAGATGGTGAAAATTGGATTAAGGGTTCTCACACGTCCCAT 439
Query 421 GGGTGATCGTTTGCCTCAGATTTACCGAACCCTCGGCGAGAACTACAGTGAAAGGGTTCT 480
|||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 440 GGGTGACCGTTTGCCTCAGATTTACCGAACCCTTGGCGAGAACTACAGCGAAAGGGTTCT 499
Query 481 ACCTTCCATCATCCATGAAACCCTAAAAGCCGTGGTAGCTCAGTACAATGCAAGCCAGCT 540
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 500 TCCTTCCATCATCCATGAAACCCTAAAAGCAGTGGTAGCTCAGTACAATGCAAGCCAGCT 559
Query 541 CATTACACAGAGAGAAGCTGTGAGCAGAGAGATACGCAAGATTCTGACAGAGCGGGCTTC 600
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 CATTACCCAGAGAGAAGCTGTGAGCAGAGAGATACGCAAGATTCTGACAGAGCGGGCTTC 619
Query 601 TAACTTTGACATTGCTCTTGATGATGTCTCCATCACGACTCTCACATTCGGCAAAGAGTT 660
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 620 TAACTTTGACATTGCTCTTGATGATGTCTCCATCACGACTCTGACATTCGGCAAAGAGTT 679
Query 661 CACCGCAGCAATCGAGGCAAAACAAGTCGCTGCTCAGGAAGCTGAAAGGGCTAAGTTCAT 720
||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 680 CACCGCAGCTATCGAGGCAAAACAAGTTGCTGCTCAGGAAGCTGAACGGGCTAAGTTCAT 739
Query 721 TGTGGAGAAAGCCGAGCAAGACAGGAGAAGTGCGGTTATCCGTGCACAGGGAGAAGCTAA 780
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 740 TGTGGAGAAAGCCGAACAAGACAGGAGAAGTGCGGTTATCCGTGCGCAGGGAGAAGCTAA 799
Query 781 AAGTGCTCAGCTTATCGGACAAGCAATTGCGAATAATCAGGCATTCATCACTCTGAGAAA 840
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 800 AAGTGCTCAGCTTATCGGACAAGCAATTGCGAACAATCAGGCATTCATCACTCTGAGAAA 859
Query 841 GATTGAAGCGGCGAGAGAGATTGCTCAGACCATTGCACTATCTGCTAACAAAGTTTACCT 900
||||||||| |||||||||||||| ||||||||||||| |||||||||||| ||||||||
Sbjct 860 GATTGAAGCTGCGAGAGAGATTGCACAGACCATTGCACAATCTGCTAACAAGGTTTACCT 919
Query 901 GAGCTCCAACGATCTGTTGCTTAACCTTCAAGAAATGAACTTGGAGCCTAACCCTAAGAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 920 GAGCTCCAACGATCTGTTGCTTAACCTTCAAGAAATGAACTTGGAGCCTAA------GAA 973
Query 961 GTAAAAGAGAAGGAACGAGTAAGTTT-T--A----A-A---A----A---A-----TCTC 997
|||||||||||||||||||||||||| | | | | | | | ||||
Sbjct 974 GTAAAAGAGAAGGAACGAGTAAGTTTCTTCATTTCATATTCATTTCATTTAAAAGATCTC 1033
Query 998 TCCGCCTTGGAAGTAAAGAACGGGTTCGGTGTTTGACCAAATGACCCCTTCTCGTGACTG 1057
|||||||||||||||||| | ||||| |||||||||||||||||||| ||||||||||||
Sbjct 1034 TCCGCCTTGGAAGTAAAGGATGGGTT-GGTGTTTGACCAAATGACCCTTTCTCGTGACTG 1092
Query 1058 ATTCTGAAAATAGTCTTTAAGCGGACATATTGCGA----CTCAGATTGGCTTTGGTCAGT 1113
||||||||||||||||||||| |||||||||| || | |||||||||||||||||||
Sbjct 1093 ATTCTGAAAATAGTCTTTAAGAGGACATATTGAGAGAGACGCAGATTGGCTTTGGTCAGT 1152
Query 1114 ATTATTCATCATGTTCAATGAAACTTTTTGTTGATATTCAACT-T-T--CCT-GGAAAAT 1168
|||||||||||| ||||||||||||||||||||||||| || | | || ||| |||
Sbjct 1153 ATTATTCATCATTTTCAATGAAACTTTTTGTTGATATTTTCCTGTGTTTCCCCGGACAAT 1212
Query 1169 TGATGAAGTTGAATTTTAAACTTAATAATATTCATAT 1205
|||||||||||||||| ||||| ||||||||||||||
Sbjct 1213 TGATGAAGTTGAATTTAAAACTCAATAATATTCATAT 1249
> AT2G20530.1 | Symbols: ATPHB6, PHB6 | prohibitin 6 | chr2:8841972-8844000
FORWARD LENGTH=1165
Length=1165
Score = 472 bits (255), Expect = 5e-132
Identities = 585/742 (79%), Gaps = 32/742 (4%)
Strand=Plus/Plus
Query 202 TCTCTACAATGTCGATGGAGGACACCGTG-C--TGTCATGTTCAACC-GATTAACTGGTA 257
||||||||||||||||||||| || || | | |||| | || |||| | || |||||
Sbjct 190 TCTCTACAATGTCGATGGAGGTCATCGAGCCATTGTC-T-TT-AACCGGCTT-GTTGGTA 245
Query 258 TCAAGGAAAAGGTATACCCAGAGGGCACACATTTTATGATGCCATGGTTTGAAAGGCCAA 317
|||| || ||||| ||||| ||||| || || ||||||| |||||||| ||||||||||
Sbjct 246 TCAAAGACAAGGTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTTCGAAAGGCCAA 305
Query 318 TCATCTATGACGTTCGTGCAC-GACCTTATCTTGTAGAGAGCACCACC-GGTAGTCATGA 375
|||||||||||||||||||| | |||||||| || |||||||| | | || || | |||
Sbjct 306 TCATCTATGACGTTCGTGCAAAG-CCTTATCTAGTTGAGAGCAC-ATCTGGGAGCCGTGA 363
Query 376 CCTTCAGATGGTGAAAATTGGACTAAGGGTTCTCACACGTCCCATGGGTGATCGTTTGCC 435
|| |||||||| || ||||| || |||||||||| ||||| |||| ||| | || ||
Sbjct 364 TCTCCAGATGGTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACC 423
Query 436 TCAGATTTACCGAACCCTCGGCGAGAACTACAGTGAAAGGGTTCTA-CCTTCCATCATCC 494
|| | ||||| |||| || ||||| ||| | || || || || ||||| |||||||
Sbjct 424 AGAGGTATACCGGTCCCTTGGTGAGAATTACCGCGAGAGAGT-CTTGCCTTCTATCATCC 482
Query 495 ATGAAACCCTAAAAGCCGTGGTAGCTCAGTACAATGCAAGCCAGCTCATTACACAGAGAG 554
| || ||| | ||||| ||||| ||||||||||| |||||||| || ||||| |||||||
Sbjct 483 ACGAGACCTTGAAAGCTGTGGTTGCTCAGTACAACGCAAGCCAACTTATTACTCAGAGAG 542
Query 555 AAG-CTGTGAGCAGAGAGAT-ACGCAAGATTCTGACAG-AGCGGGCTTCTAACTTTGACA 611
| | | ||||| ||||| || | | || || || || | | || | ||||| |||
Sbjct 543 A-GTCGGTGAGTAGAGAAATCAGGAAA-ATCCTAACTCTAA-GAGCCGCAAACTTCCACA 599
Query 612 TTGCTCTTGATGATGTCTCCATCAC-GACTCTCACATTCGGCAAAG-AGTTCACCGCAGC 669
|||| || |||||||| |||||||| | || | |||||||| |||| ||||||| |||||
Sbjct 600 TTGCACTGGATGATGTGTCCATCACAGGCT-TGACATTCGG-AAAGGAGTTCACGGCAGC 657
Query 670 AATCGA-GGCAAAACAAGTCGCTGCTCAGGAAGCTGAAAGGGCTAAGTTCATTGTGGAGA 728
|| || || ||| || ||||||||||| || || ||| |||||||||||||||| ||||
Sbjct 658 CATAGAAGG-AAAGCAGGTCGCTGCTCAAGAGGCCGAACGGGCTAAGTTCATTGTCGAGA 716
Query 729 AAGCCGAGCAAGACAGGAGAAGTGCGGTTATCCGTGCAC-AGGGAGAAGCTAAAAGTGCT 787
|||| || || |||| ||||||||| |||||||| || | |||||||||| || ||||||
Sbjct 717 AAGCTGAACAGGACAAGAGAAGTGCTGTTATCCGCGC-CGAGGGAGAAGCCAAGAGTGCT 775
Query 788 CAGCTTATCGGACAAGCAATTGCGAATAATCAGGCATTCATCACTCTGAGAAAGATTGAA 847
||||| || || |||||||| || || || || || ||| | || ||||| ||||| |||
Sbjct 776 CAGCTCATTGGTCAAGCAATCGCAAACAACCAAGCGTTCTTAACACTGAGGAAGATCGAA 835
Query 848 GCGGCGAGAGAGATTGCTCAGACCATTGCACTA--TCTGCTAACAAAGTTTACCTGAGCT 905
|| || |||||||| || |||||||| | ||| || || ||||| |||||| ||||||
Sbjct 836 GCAGCTAGAGAGATCGCACAGACCAT--CTCTAGGTCGGCGAACAAGGTTTACTTGAGCT 893
Query 906 CCAACGATCTGTTGCTTAACCT 927
| ||||||||||||||||||||
Sbjct 894 CTAACGATCTGTTGCTTAACCT 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59186442555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5