BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470362
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03870.1 | Symbols: FLA9 | FASCICLIN-like arabinoogalactan 9... 1526 0.0
> AT1G03870.1 | Symbols: FLA9 | FASCICLIN-like arabinoogalactan
9 | chr1:982506-983540 REVERSE LENGTH=1035
Length=1035
Score = 1526 bits (826), Expect = 0.0
Identities = 953/1014 (94%), Gaps = 9/1014 (1%)
Strand=Plus/Plus
Query 1 TAGACATTATTTGTCAACAAACGTTTTGTATTGACTTTGCCATCTCATCCCAACTAGATA 60
||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| |||||
Sbjct 16 TAGACATTATTTGTCTACAAACGTTTTGTATTGACTTGGCCATCTCATTCCAACAAGATA 75
Query 61 CAACTCATCATTTCAAACATTTTAACTTCCATATAAAGCATTCCCTTCCGATCTCACTTT 120
|||||||||| | |||||| || |||||||||||||| ||||||||||||||||||| ||
Sbjct 76 CAACTCATCACTCCAAACA-TTCAACTTCCATATAAACCATTCCCTTCCGATCTCAC-TT 133
Query 121 TCC-AATCACTCTTCCCACTTCAACTAAGCAAACCAATAATGGCAACCACTCGTCTAACT 179
||| ||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 134 TCCAAATCACTCTTCACACTTTAACTAAGCAAACCAATAATGGCTACCACTCGTCTAACT 193
Query 180 CTAGCTCCTCTCCTCCTCATCGC-CCTCGTACTACTCGCAACCAAGGCCACGGCTCAGCC 238
||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||
Sbjct 194 CTAGCTCCTCTCCTCCTCATCGCAGC-CGTACTACTCGCAACCAAGGCAACGGCTCAGCC 252
Query 239 AGCAGCCCCTGCTCCAG-GCCCTGCCGGTCCCATCAACCTCACCGCGATCCTCGAAAAAG 297
|||||||| ||||||| | ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 253 GGCAGCCCCCGCTCCAGAG-CCTGCTGGTCCCATCAACCTCACTGCGATCCTCGAAAAAG 311
Query 298 GTGGTCAATTCACTACTTTCATCCATCTTCTAAACATCACTCAAGTCGGTAGCCAAGTGA 357
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 312 GTGGTCAATTCACTACTTTCATCCATCTTCTAAACATCACTCAAGTCGGTAGTCAAGTGA 371
Query 358 ACATTCAAGTTAATAGTTCATCGGAAGGTATGACAGTGTTTGCACCAACAGACAATGCTT 417
|||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 372 ACATTCAAGTCAATAGTTCATCCGAAGGTATGACGGTGTTCGCACCAACAGACAATGCTT 431
Query 418 TTCAAAACCTTAAACCCGGAACTCTAAACCAGTTAA-CTCCAGACGAGCAAGTGAAACTC 476
|||||||||||||||||||||| ||||||||||||| | || ||||| ||||| ||||||
Sbjct 432 TTCAAAACCTTAAACCCGGAACCCTAAACCAGTTAAGC-CCTGACGATCAAGTTAAACTC 490
Query 477 ATTCTATACCACGTTAGCCCCAAATTTTACAGTATGGACGATCTCCTCTCCGTGAGTAAC 536
||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 491 ATTCTCTACCACGTTAGCCCCAAATATTACAGTATGGATGATCTCCTCTCCGTGAGTAAC 550
Query 537 CCGGTCAGGACTCAAGCTTCTGGCCGAGACAACGGTGTTTACGGGCTTAACTTCACCGGT 596
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 CCGGTTAGGACTCAAGCTTCTGGCCGAGACAACGGTGTTTACGGGCTTAACTTCACCGGC 610
Query 597 CAAACAAACCAAATAAATGTCTCTACTGGTTATGTGGAAACACGTGTTAGCAATGCGTTG 656
|||||||||||||| ||||||||||||||||||||||| |||||| |||||||| |||||
Sbjct 611 CAAACAAACCAAATCAATGTCTCTACTGGTTATGTGGAGACACGTATTAGCAATTCGTTG 670
Query 657 AGGCAACAGCGTCCTCTCGCAGTTTATGTTGTCGACATGGTTTTGTTGCCAGGTGAGATG 716
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 671 AGGCAACAACGTCCTCTCGCAGTTTATGTTGTCGACATGGTTTTGTTGCCCGGTGAGATG 730
Query 717 TTCGGAGAGCACAAGCTTTCGCCGATTGCTCCTGCACCTAAATCTAAATCCGGTGGGGTT 776
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 731 TTCGGAGAGCACAAGCTTTCGCCGATTGCTCCTGCCCCTAAATCTAAATCCGGTGGGGTT 790
Query 777 TCCGATGACTCCGGCTCCACTAAAAAGGCAGCCTCGCCGTCGGATAAGTCAGGCTCCGGT 836
|||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 791 ACCGATGACTCCGGCTCCACTAAGAAGGCAGCGTCACCGTCGGATAAGTCAGGCTCCGGT 850
Query 837 GAGAAGAAAGTCGGGCTAGGGTTTGGTCTTGGACTTGTTGTCTTGTGTTTGAAATTTCTC 896
|||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 851 GAGAAGAAAGTCGGACTAGGGTTTGGTCTTGGACTTATTGTCTTATGTTTGAAATTTCTC 910
Query 897 TATTGAAAATTTAATATCAATGATTTGTTTTGCTTTCTATTGATTTTATTCTGCGATTTG 956
| |||||||||||||| ||| |||||||||||||||||||||||||||| ||||||| ||
Sbjct 911 TTTTGAAAATTTAATAGCAAAGATTTGTTTTGCTTTCTATTGATTTTATCCTGCGATGTG 970
Query 957 AGGTATAAATATGAAATTTGTTAATTAAGTTCCGTGAAATAAAGTGTGAGATTT 1010
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 971 AGGTATAAATATGAAATTTGTTGATTAAGTTCCGTGAAATAAAATGTGAGATTT 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49480634795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5