BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470363
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03880.1 | Symbols: CRU2, CRB | cruciferin 2 | chr1:985751-9... 2549 0.0
> AT1G03880.1 | Symbols: CRU2, CRB | cruciferin 2 | chr1:985751-988146
FORWARD LENGTH=1633
Length=1633
Score = 2549 bits (1380), Expect = 0.0
Identities = 1523/1594 (96%), Gaps = 2/1594 (0%)
Strand=Plus/Plus
Query 1 AATAAAGAGGAAGAAAAATGGGTCGAGTCTCATCTATTGTCTCTTTCTCTTTGACACTCT 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 19 AATAAAGAGGAAGAAAAATGGGTCGAGTCTCATCTATTATCTCTTTCTCTTTGACACTCT 78
Query 61 TGATCCTCTTCAATGGCTACACTGCCCAACAATGGCCCAATGAGTGCCAGCTCGATCAAC 120
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 79 TGATCCTCTTCAATGGCTACACTGCCCAACAGTGGCCCAACGAGTGCCAGCTCGATCAAC 138
Query 121 TCAATGCGCTCGAACCGTCCCAAATCATCAAGAGCGAGGGTGGTCGCATCGAGGTCTGGG 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 TCAATGCGCTCGAACCATCCCAAATCATCAAGAGCGAGGGTGGTCGCATCGAGGTCTGGG 198
Query 181 ACCACCATGCACCCCAGCTCCGTTGCTCCGGCTTCGCCTTTGAGCGTTTCGTCATTGAGC 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 199 ACCACCATGCACCCCAGCTCCGTTGCTCCGGCTTTGCCTTTGAGCGTTTCGTCATTGAGC 258
Query 241 CTCAGGGTCTTTACTTGCCCACTTTCTTGAACGCCGGCAAACTCACGTTTGTTGTTCACG 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 CTCAGGGTCTTTTCTTGCCCACTTTCTTGAACGCCGGCAAACTCACGTTTGTTGTTCACG 318
Query 301 GAAGGGGTCTAATGGGAAGAGTGATTCCGGGATGCGCCGAGACGTTCATGGAGTCACCGG 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 319 GAAGGGGTCTAATGGGAAGAGTTATTCCGGGATGCGCCGAGACGTTCATGGAGTCACCGG 378
Query 361 TGTTTGGAGAAGGTCAAGGTCAGGGTCAGAGTCAAGGGTTCCGTGACATGCACCAGAAAG 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TATTTGGAGAAGGTCAAGGTCAGGGTCAGAGTCAAGGGTTCCGTGACATGCACCAGAAAG 438
Query 421 TAGAGCACCTACGGTGCGGTGACACCATAGCAACACCACCTGGTATGGCTCAATGGTTCT 480
|||||||||||||||||||||||||||| ||||||||| ||||| | |||||||||||||
Sbjct 439 TAGAGCACCTACGGTGCGGTGACACCATTGCAACACCATCTGGTGTAGCTCAATGGTTCT 498
Query 481 ACAACAATGGAAATGAGCCTCTCATTCTTGTTGCAGCCGCAGATCTCGCCAACAACAACA 540
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||| | |
Sbjct 499 ACAACAATGGAAATGAGCCTCTCATTCTTGTTGCAGCCGCGGATCTCGCCAGCAACCAGA 558
Query 541 ACCAGCTTGACCGCAACCTTAGACCATTTTTGATAGCCGGAAACAACCCACAAGGGCAGG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 ACCAGCTTGACCGCAACCTTAGACCATTTTTGATAGCCGGAAACAACCCACAAGGGCAGG 618
Query 601 AATGGCTGCAAGGCCGAAAGCAACAGAAACAAAACAACATCTTCAATGGCTTCGCACCTG 660
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 619 AATGGCTACAAGGCCGAAAGCAACAGAAGCAAAACAACATCTTCAATGGCTTCGCACCTG 678
Query 661 AGATCTTGGCTCAAGCTTTCAAGATCAATGTTGAGACGGCTCAGCAGCTCCAGAGCCAGC 720
|||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||
Sbjct 679 AGATCTTGGCTCAAGCCTTCAAGATCAATGTCGAGACGGCTCAGCAGCTCCAGAACCAGC 738
Query 721 AAGACAACCGTGGCAACATCGTCAAGGTCAAAGGACCTTTCGGCGTCATTAGACCACCCT 780
|||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 739 AAGATAACCGTGGCAACATCGTCAAGGTCAACGGACCTTTCGGCGTCATTAGGCCACCCT 798
Query 781 TGAGACGCGGCGAAGGCGGCCAGCAACCACAGGAAAAAACTAACGGTCTAGAAGAGACTT 840
|||||||||||||||||||||| |||||||| |||| | |||| ||| |||| |||||||
Sbjct 799 TGAGACGCGGCGAAGGCGGCCAACAACCACATGAAATAGCTAATGGTTTAGAGGAGACTT 858
Query 841 TGTGCACAATGCGATGCACCGAAAACCTCGATGACCCGTCGGATGCTGACGTGTACAAGC 900
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 859 TGTGCACCATGCGATGCACTGAAAACCTCGATGACCCGTCGGATGCTGACGTGTACAAGC 918
Query 901 CATCGCTCGGATACATCAGCACACTTAACAGCTACAATCTTCCTATCCTCAGACTTCTCC 960
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 CATCACTCGGATACATTAGCACACTTAACAGCTACAATCTTCCTATCCTCAGACTTCTCC 978
Query 961 GCCTTAGCGCTCTTCGTGGCTCCATCCGTAAAAACGCTATGGTGCTACCGCAATGGAACG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 GCCTTAGCGCTCTTCGTGGCTCCATCCGTAAAAACGCTATGGTGCTACCGCAATGGAACG 1038
Query 1021 TAAACGCAAACGCGGCACTGTACGTGACAAACGGAAAGGCTCATATACAAATGGTGAACG 1080
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 TAAACGCAAACGCGGCACTCTACGTGACAAACGGAAAGGCTCATATACAAATGGTGAACG 1098
Query 1081 ACAACGGAGAAAGAGTGTTTGACCAAGAGATCTCTAGCGGACAGTTACTTGTTGTACCAC 1140
||||||||||||||||||| |||||||||||||| |||||||||||||| || || ||||
Sbjct 1099 ACAACGGAGAAAGAGTGTTCGACCAAGAGATCTCCAGCGGACAGTTACTAGTCGTGCCAC 1158
Query 1141 AAGGCTTCTCGGTCATGAAACATGCCACAGGCGAACAGTTCGAGTGGATCGAATTCAAGA 1200
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1159 AAGGCTTTTCGGTCATGAAACATGCCATAGGCGAACAGTTCGAGTGGATCGAATTCAAGA 1218
Query 1201 CAAACGAAAACGCACAGATCAATACACTCGCGGGCCGTACCTCAGTCATGAGAGGTTTGC 1260
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1219 CAAACGAAAACGCACAGGTCAACACACTCGCGGGCCGTACCTCAGTCATGAGAGGTTTGC 1278
Query 1261 CACTTGAGGTTGTATCCAACGGGTATCAGATCTCTCCCGAAGAAGCTAGACGGGTTAAGT 1320
| ||||||||| || |||| ||||| |||||||||||||||||||||| ||| || ||||
Sbjct 1279 CGCTTGAGGTTATAACCAATGGGTACCAGATCTCTCCCGAAGAAGCTAAACGAGTAAAGT 1338
Query 1321 TTAGCACGATCGAGACCACACTGACTCATAGCAGCCCGATGAGCTACGGAAGGCCTAGGG 1380
|||||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 1339 TTAGCACGATTGAGACCACACTGACCCATAGCAGTCCAATGAGCTACGGAAGGCCTAGGG 1398
Query 1381 CTTGAGGCTTGATGAGCTCGCGGTGGAATAGTGTTTGAATCTAAAGTTTCGGTTTGGTAC 1440
||||||||||||||||| || |||||||||| |||||||||||||||| |||||||||||
Sbjct 1399 CTTGAGGCTTGATGAGCGCGTGGTGGAATAGCGTTTGAATCTAAAGTT-CGGTTTGGTAC 1457
Query 1441 GGTTTGTAATATGAAATAATAATGTACAAAGAAGTTCTACGCTTAAGGGAACTGTTTTGT 1500
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 GACTTGTAATATGAAATAATAATGTACAAAGAAGTTCTACGCTTAAGGGAACTGTTTTGT 1517
Query 1501 TTTGAGCTTTTTATTAGGACGCCTAGTGTACAACAACGAATGT-GTATATAAGCGATCGT 1559
|||||||||| |||||||||| |||||||||||||||||| || || |||||||||||||
Sbjct 1518 TTTGAGCTTTGTATTAGGACGTCTAGTGTACAACAACGAACGTCGTGTATAAGCGATCGT 1577
Query 1560 TGACTATGTACATGTAACTCTTTCCTTAATAAAA 1593
||||| || ||||||||||||||||| |||||||
Sbjct 1578 TGACTCTGCACATGTAACTCTTTCCTGAATAAAA 1611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78664254015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5