BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470364
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03890.1 | Symbols: | RmlC-like cupins superfamily protein ... 2189 0.0
> AT1G03890.1 | Symbols: | RmlC-like cupins superfamily protein
| chr1:989198-991020 FORWARD LENGTH=1520
Length=1520
Score = 2189 bits (1185), Expect = 0.0
Identities = 1377/1469 (94%), Gaps = 16/1469 (1%)
Strand=Plus/Plus
Query 1 ATGCATAAGCTTTTGTTTTGTCTTCTTTCCGTCGTCTCACTCACACTTCTCCTCTCCTTC 60
||||||||||||||||||| |||||| ||||||||||||||| || ||||||||| ||||
Sbjct 53 ATGCATAAGCTTTTGTTTTCTCTTCTCTCCGTCGTCTCACTCTCATTTCTCCTCTTCTTC 112
Query 61 CATGGCGGCGAGGCACGCCAGCGAGAGGTGCCGTTTCAAAACGCATGCCATTTCAGCCAA 120
||||||| |||||||||||||||||||| |||||||| |||||| |||||||||||||||
Sbjct 113 CATGGCGCCGAGGCACGCCAGCGAGAGGCGCCGTTTCCAAACGCCTGCCATTTCAGCCAA 172
Query 121 ATAAACAGCCTCGCGCCCGCTCAGGCGACCAAGTTTGAAGCCGGTCAGATGGAAGTATGG 180
|| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 173 ATCAACAGCCTCGCGCCCGCTCAGGCGACGAAGTTCGAAGCCGGTCAGATGGAAGTATGG 232
Query 181 GACCACATGAGCCCTGAGCTCCGATGCGCAGGTGTGACGGTGGCTCGCATCACCCTCCAG 240
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 233 GACCACATGAGCCCTGAGCTCCGATGCGCCGGTGTAACGGTGGCTCGCATCACCCTTCAG 292
Query 241 GCCAATTCCATTTTCTTGCCCGCTTTCTTTAGCCCACCTGCTCTCGCTTACGTTGTCCAA 300
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 293 CCCAATTCCATTTTCTTGCCCGCTTTCTTTAGCCCACCTGCCCTTGCTTACGTTGTCCAA 352
Query 301 GGAGAAGGAGTGATGGGGACGATTGCTTCTGGTTGTCCTGAGACTTATGAAGAAATTGAA 360
||||||||||| |||||||||||||||||||||||||||||||||| || |||| |||||
Sbjct 353 GGAGAAGGAGTTATGGGGACGATTGCTTCTGGTTGTCCTGAGACTTTTGCAGAAGTTGAA 412
Query 361 GGATCGTCAGGAAgaggaggaggaggaggagACCGGCGTCGACGTTTTGAGGACATGCAC 420
||||| ||||||||||||||||||||| || |||| |||||||||||||||||||||||
Sbjct 413 GGATCATCAGGAAGAGGAGGAGGAGGA-GA-CCCGG-GTCGACGTTTTGAGGACATGCAC 469
Query 421 CAGAAGTTAGAGAATTTCCGGCGAGGAGATGTGTTTGCTTCGCTTGCCGGAGTTTCACAG 480
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 470 CAGAAGTTGGAGAATTTCCGGCGAGGGGATGTGTTTGCTTCGCTTGCCGGAGTTTCACAG 529
Query 481 TGGTGGTACAACCGCGGTGATTCCGATGCCGTCATTGTCATTGTTCTTGATGTCACCAAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 TGGTGGTACAACCGCGGTGATTCCGATGCCGTCATTGTCATTGTTCTTGATGTCACCAAC 589
Query 541 AGAGAAAACCAGCTTGACCAAGTCCCTAGGATGTTCCAATTAGCCGGGAGCAGAACGCAA 600
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 590 AGAGAAAACCAGCTTGACCAAGTCCCTAGGATGTTCCAACTAGCCGGGAGCAGAACGCAA 649
Query 601 GAACAACAACAACCATTAACCTGGCCATCAGGCAACAATGCTTTCAGCGGTTTCGACCCA 660
||| || ||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 650 GAAGAAGAACAACCATTAACGTGGCCATCAGGCAACAACGCTTTCAGCGGTTTCGACCCA 709
Query 661 AACATTATCGCGGAAGCATTCAAAATCAACATCGAGACAGCTAAGCAACTTCAAAACCAG 720
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 710 AACATAATCGCGGAAGCATTCAAAATCAACATCGAGACAGCTAAGCAACTACAAAACCAG 769
Query 721 AAGGACAACAGAGGAAACATAATCCGAGCAAATGGTCCTCTCCATTTCGTCACCCCACCG 780
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 770 AAGGACAACAGAGGAAACATAATCCGAGCAAATGGTCCTCTCCATTTCGTCATCCCACCG 829
Query 781 CCACGGGAATGGCAGCAAGATGGCATTGCTAATGGCATCGAAGAGACGTATTGCACGGCT 840
|| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 830 CCTCGTGAATGGCAGCAAGATGGCATTGCTAATGGCATCGAAGAGACTTATTGCACGGCT 889
Query 841 AAGATTCATGAGAATATCGATGATCCAGAACGGACTGACCATTTTAGCACACGAGCCGGA 900
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 890 AAGATTCATGAGAATATCGATGATCCAGAACGGTCTGACCATTTTAGCACACGAGCCGGA 949
Query 901 AGAATCAGTACTCTTAACAGTCTTAATCTCCCCGTTCTACGCCTAGTCAGACTTAACGCC 960
|||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 950 AGAATCAGCACTCTTAACAGCCTTAATCTCCCTGTTCTACGTCTAGTCAGACTTAACGCC 1009
Query 961 CTTAGAGGTTATCTCTACAGCGGGGGAATGGTGTTGCCACAATGGACCGCAAACGCCCAC 1020
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 1010 CTTAGAGGTTATCTCTACAGCGGAGGAATGGTGTTGCCACAATGGACGGCAAACGCGCAC 1069
Query 1021 ACGGTGCTGTATGTCACAGGCGGTCAAGCCAAGATACAAGTGGTGGACGACAATGGTCAG 1080
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1070 ACGGTGCTATACGTCACAGGAGGTCAAGCCAAGATACAAGTGGTGGACGACAATGGTCAG 1129
Query 1081 TCTGTGTTCAATGAGCAAGTGGGACAAGGCCAAGT-ACTTGTGATTCCACAGGGCTTTGC 1139
|| |||||||||||||||||||||||||||||| | | ||||||||||||| ||||||||
Sbjct 1130 TCGGTGTTCAATGAGCAAGTGGGACAAGGCCAAATCA-TTGTGATTCCACAAGGCTTTGC 1188
Query 1140 AGTATCGAAAATTGCCGGTGAAACGGGTTTCGAATGGATATCGTTCAAGACAAACGATCA 1199
||| || |||| || ||||||||||||||||| |||||||| ||||||||||||||| |
Sbjct 1189 AGTTTCAAAAACGGCTGGTGAAACGGGTTTCGAGTGGATATCATTCAAGACAAACGATAA 1248
Query 1200 CGCTTACATTAACACACTCAGCGGCCAAACATCGTACTTGAGAGCGGTCCCTGTCGATGT 1259
|||||||||||||||||| |||||||||||||||||||||||||| || || || |||||
Sbjct 1249 CGCTTACATTAACACACTGAGCGGCCAAACATCGTACTTGAGAGCAGTTCCAGTGGATGT 1308
Query 1260 AATCAAAGCATCGTATGGAGTGAACGAGGAAGAAGCGAAGAGGATCAAGTTTAGTCAGCA 1319
|||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1309 GATCAAAGCGTCATATGGAGTGAACGAGGAAGAAGCCAAGAGGATCAAGTTTAGTCAGCA 1368
Query 1320 AGAGACTTTGTTGGCTATGACACCAAGCTCTTCTTCTTAATTAGctttttgcttttgctt 1379
|||||| ||||| |||||||||||||||||||||||||| ||| ||| || ||||
Sbjct 1369 AGAGACCATGTTGTCTATGACACCAAGCTCTTCTTCTTAA---GCTCTTTAATT--GCTT 1423
Query 1380 cctttgatgtttttt-agattttCCAGTCAATGAAATAAATAAAGATGAGACTTCTAATA 1438
||||| ||||||||| |||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1424 CCTTTAATGTTTTTTTAGATTTTCCAGTCACTGAAATAAATAAAGATGAGACT---AATA 1480
Query 1439 ACCAACTTT--ACAAAGCTTCAATAACAA 1465
||||||||| ||||||||||||||||||
Sbjct 1481 ACCAACTTTTCACAAAGCTTCAATAACAA 1509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72238584255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5