BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470372
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03960.1 | Symbols: | Calcium-binding EF hand family protei... 2218 0.0
AT5G44090.1 | Symbols: | Calcium-binding EF-hand family protei... 1683 0.0
> AT1G03960.1 | Symbols: | Calcium-binding EF hand family protein
| chr1:1013715-1017929 FORWARD LENGTH=2331
Length=2331
Score = 2218 bits (1201), Expect = 0.0
Identities = 1328/1391 (95%), Gaps = 2/1391 (0%)
Strand=Plus/Plus
Query 570 TTTGCCTGCTGTGTTTCTGAGCAGCAGCACTCCCCCGCTATCTCCACGAAGCTCGTCTGG 629
||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 580 TTTGCCTTCTGTGTTTCTGAGCAGCAGCACTCCCCCACTATCTCCACGAAGCTCCTCTGG 639
Query 630 GTCCCCTCGTTTCTCGAGGCAAAGGACTAGCCCTCCTTCTCTCCAGTCTCCTCTGCGATC 689
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 640 TTCCCCTCGTTTCTCCAGGCAAAGGACTAGCCCTCCTTCTCTCCACTCTCCTCTTAGATC 699
Query 690 ATTCAAGGAGCCCAAGCATGAACTCATTCCTCAGTTCTACTACCAACACGGGCGTCCACC 749
| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 700 ACTCAAGGAGCCAAAGCGCCAACTCATTCCTCAGTTCTACTACCAACACGGGCGTCCACC 759
Query 750 AGCAAAAGACCGAAAGGAACAGTGTATATCCATGGTTGATCAATTTTTTAGAAACTATAT 809
||||||||| | |||||| || ||| ||||||||||||||||| ||||||| ||||||||
Sbjct 760 AGCAAAAGAACTAAAGGAGCAATGTCTATCCATGGTTGATCAAGTTTTTAGTAACTATAT 819
Query 810 TGATGGACTACATGTAGATGAGTTCAAATCCATTACGAAAGAAGTCTGCAAGCTGCCTTC 869
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 820 TGATGGACTACATGTAGATGAATTCAAATCCATTACGAAACAAGTCTGCAAGCTGCCTTC 879
Query 870 TTTTCTCTCTCCTGCACTTTTCAGAAAGATCGATCACAATTGCACTGATATAGTTACAAG 929
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 880 TTTTCTTTCTCCTGCACTTTTCAGAAAGATCGATCCCAATTGCACTGATATAGTTACAAG 939
Query 930 GGATGCGTTTATCAAGTATTGGATTGATGGAAATATGTTAACTATGGACACAGCCTCCCA 989
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 940 GGATGCATTTATCAAGTATTGGATTGATGGCAATATGTTAACTATGGACACAGCCTCCCA 999
Query 990 GATATATAATATACTAAGGCAGCAGGGCTGCAAG-TACCTCAGACAGGCAGACTTCAAAC 1048
||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 1000 GATATATAATATACTAAGGCAGCAGGGCTGC-AGCTATCTCAGACAGGCAGACTTCAAAC 1058
Query 1049 CAGTTCTTGATGAGCTTCTGGCAACACATCCTGGGTTAGAATTTCTGAGGACGACAAGCG 1108
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||
Sbjct 1059 CAGTTCTTGATGAGCTTCTGGCAACACATCCTGGATTAGAATTTTTGAGGACGATAAGCG 1118
Query 1109 AATTTCAAGAAAGATATGCTGAAACTGTCATCTACAGAATATTTTACTACATTAACAGAT 1168
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1119 AGTTTCAAGAAAGATATGCTGAAACGGTCATCTACAGAATATTTTACTACATTAACAGAT 1178
Query 1169 CCGGAACTGGTTGCCTTACTCTTAGAGAGCTGAAACGTGGAAATCTAATTGCTGCTATGC 1228
|||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1179 CCGGAACTGGCTGCCTTACTCTTAGAGAGCTGAGACGTGGAAATTTAATTGCTGCTATGC 1238
Query 1229 AACAACTTGATGAAGAGGACGACATCAATAAAATTATTAGGTACTTCTCCTATGAGCACT 1288
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1239 AACAACTTGATGAAGAGGACGACATTAATAAAATTATTAGGTACTTCTCCTATGAGCACT 1298
Query 1289 TCTACGTCATATACTGCAAATTTTGGGAACTTGATGGTGACCATGATTGTTTAATTGATA 1348
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1299 TCTACGTGATATACTGCAAATTTTGGGAACTTGATGGTGACCATGATTGTTTTATTGATA 1358
Query 1349 AGGACAATCTCATCAAATATGGTAATAATGCCCTTACCTACAGGATTGTTGATAGAATAT 1408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 AGGACAATCTCATCAAATATGGTAATAATGCCCTTACCTACAGGATTGTTGATAGAATAT 1418
Query 1409 TTTCACAGGTTCCTAGGAAGTTTACGAGTAAAGTTGAAGGGAAGATGAGTTATGAAGATT 1468
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 TTTCACAGATTCCAAGGAAGTTTACGAGTAAAGTTGAAGGGAAGATGAGTTATGAAGATT 1478
Query 1469 TTGTGTACTTCATTCTCGCCGAGGAAGACAAGTCTTCCGAGCCTAGTCTTGAGTATTGGT 1528
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1479 TTGTGTACTTCATTCTCGCTGAGGAAGACAAGTCTTCCGAGCCTAGTCTTGAGTATTGGT 1538
Query 1529 TCAAGTGTGTAGACTTGGATGAAAATGGCGTAATCACTCCAAACGAAATGCAGttttttt 1588
|||| || ||||||||||||| |||||| ||||||||| ||||||||||||||||||| |
Sbjct 1539 TCAAATGCGTAGACTTGGATGGAAATGGGGTAATCACTTCAAACGAAATGCAGTTTTTCT 1598
Query 1589 tCGAAGAGCAGCTGCATCGCATGGAATGCATAACCCAGGAAGCTGTTCTTTTCAGCGATA 1648
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1599 TCGAAGAGCAGCTGCATCGCATGGAATGCATAACCCAGGAAGCTGTTCTTTTCAGTGATA 1658
Query 1649 TCCTATGTCAAATAATTGACATGATTGGACCCGAGAAAGAAAACTGCATCACCTTCCAGG 1708
||||||||||||||||||||||||||||||||||||| || ||||| |||||| ||||||
Sbjct 1659 TCCTATGTCAAATAATTGACATGATTGGACCCGAGAAGGAGAACTGTATCACCCTCCAGG 1718
Query 1709 ATCTGAAAGGATCCAAACTTTCAGGAAACGTCTTCAATATACTCTTCAACCTAAATAAAT 1768
||||||||||||| |||||||||| |||||| |||||||||||||||||||| ||||| |
Sbjct 1719 ATCTGAAAGGATCGAAACTTTCAGCAAACGTTTTCAATATACTCTTCAACCTTAATAAGT 1778
Query 1769 TCATGGCATTTGAAACACGTGACCCATTTCTCATTCGCCAGGAAAGGGAGGATCCAAATT 1828
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1779 TCATGGCATTTGAAACACGTGACCCATTTCTCATTCGCCAGGAACGGGAAGATCCAAATT 1838
Query 1829 TGACAGAGTGGGATCGATTCGCTCAGAGAGAGTATGTGAGATTGTCAATGGAGGAAGATG 1888
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1839 TGACAGAGTGGGATCGATTTGCTCAGAGAGAGTATGCGAGATTGTCAATGGAGGAAGATG 1898
Query 1889 TAGATGAAGTCTCAAATGGGAGTGCAGATGTCTGGGATGAACCACTCGAACCTCCATTTT 1948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1899 TAGATGAAGTCTCAAATGGGAGTGCAGATGTCTGGGATGAACCACTCGAACCTCCATTTT 1958
Query 1949 AGTCCATAGTG 1959
|||||||||||
Sbjct 1959 AGTCCATAGTG 1969
Score = 407 bits (220), Expect = 2e-112
Identities = 314/356 (88%), Gaps = 20/356 (6%)
Strand=Plus/Plus
Query 191 GGTTGACACAGTAGCGTCGTCTTTTCGTAGCCGCTGTTGTCGAAATTTGAATTTCTCGAT 250
|||| |||||||||||||| |||||| ||||||||||||||||| |||||||||||||||
Sbjct 247 GGTTCACACAGTAGCGTCGACTTTTCATAGCCGCTGTTGTCGAATTTTGAATTTCTCGAT 306
Query 251 TTTCGCGGCGGTTTTGTTACTCCAATTGATTCAAGGAGTTTGAAGGAGTAGGGTTTCTCG 310
|||| ||||| |||||||| | ||||||||||||||||| ||||||| ||||||
Sbjct 307 TTTCCCGGCGCTTTTGTTA---C----GATTCAAGGAGTTTGAACAAGTAGGGCTTCTCG 359
Query 311 TTGCGAATAAGCAGGAGATCATGGATATTGACGGAGT--A-GACGATGTTCATATTTTAG 367
| | || |||||||||||||||||||||||| | |||||| ||||||||||||
Sbjct 360 -T-----T--GC-GGAGATCATGGATATTGACGGAGTAGACGACGATCTTCATATTTTAG 410
Query 368 ATCCTGAGCTCTTGCAGCTCCCCGGTTTATATCCTGCTCCGCTCAAGCCAAGCTCTCATA 427
|||||||||||||||||||||||||||| | |||| |||| ||||| |||| ||||| ||
Sbjct 411 ATCCTGAGCTCTTGCAGCTCCCCGGTTTGTCTCCTTCTCCCCTCAAACCAACCTCTCTTA 470
Query 428 TTGCCGATGAACTCTTCTCTCAGTGGCTCTCACTCCCTGAAACTGCCAGATTGGTCAAGT 487
|||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 471 TTGCTGATGACCTCTTCTCTCAGTGGCTCTCACTCCCTGAAACTGCCACATTGGTCAAGT 530
Query 488 CTTTGATTGATGATGCTAAATCTGGAACACCAACTAATTTATCCAAGAATTATGCC 543
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 531 CTTTGATTGATGATGCTAAATCTGGAACACCAACTAATAAATCCAAGAATT-TGCC 585
> AT5G44090.1 | Symbols: | Calcium-binding EF-hand family protein
| chr5:17742766-17748396 REVERSE LENGTH=2463
Length=2463
Score = 1683 bits (911), Expect = 0.0
Identities = 1405/1642 (86%), Gaps = 39/1642 (2%)
Strand=Plus/Plus
Query 328 ATCATGGATATTGACGGAGTAGACGATGTTCATATTTTAGATCCTGAGCTCTTGCAGCTC 387
|||||||| || || || | | |||||||||| ||||| ||||||||||||||||||||
Sbjct 485 ATCATGGAAATCGATGGTGGAAACGATGTTCAGATTTTGGATCCTGAGCTCTTGCAGCTT 544
Query 388 CCCGGTTTATATCCTGCT-CCGC-TCAAGCCAAGCTCTCATATTGCCGATGAACTCTTCT 445
|||||||| | ||||| | | | | ||| || | |||||||||| || ||||||||||
Sbjct 545 CCCGGTTTGTCTCCTG-TATCACTTAAAGAAAATC-CTCATATTGCTGAAGAACTCTTCT 602
Query 446 CTCAGTGGCTCTCACTCCCTGAAACT-GCCAGATTGGTCAAGTCTTTGATTGATGATGCT 504
| |||||||| ||||| ||||||||| ||| |||||||||||||||| ||||||||| ||
Sbjct 603 CCCAGTGGCTTTCACTTCCTGAAACTGGCC-GATTGGTCAAGTCTTTAATTGATGATACT 661
Query 505 AAATCTGGAACACCAACT-AATTTATCCAAGAATTATGCCACCACT-GATGTTTCCGGTG 562
|||||| | || || | | | | ||||||| |||| | | | || ||||| | | |
Sbjct 662 AAATCTAGTAC-CCCAGTCAGTGTATCCAAAAATTGTACTA-GTCTCAATGTTGCTTGCG 719
Query 563 GAAGTGCTTTGCC-TGCTGTGTTTCTGAGCAGCAGCACTCCCCCGCTATCTCCACGAAGC 621
| ||||| ||||| | |||| ||||||| |||| |||||||||| ||||| |||||| ||
Sbjct 720 GGAGTGCATTGCCAT-CTGTTTTTCTGAACAGCGGCACTCCCCCACTATCCCCACGAGGC 778
Query 622 TCGTCTGGGTC-CCCTCGTTTCTCGAGGCAAAGGACTAGCCCTCCTTCTCTCCAGTCTCC 680
|| ||||||| ||| |||||||||||||||| ||| || | |||||||| ||||||||
Sbjct 779 TCACCTGGGTCTCCC-CGTTTCTCGAGGCAAAAGACAAG--C-CCTTCTCTACAGTCTCC 834
Query 681 TCTGCGATCATTCAAGGAGCCCAAGCATGAACTCATTCCTCAGTTCTACTACCAACACGG 740
|||| |||| ||| ||| || |||| |||||||||| ||||| |||| |||||| ||
Sbjct 835 TCTGAAATCAGTCAGGGAACCAAAGCGCCAACTCATTCCACAGTTTTACTTCCAACATGG 894
Query 741 GCGTCCACCAGCAAAAGACCGAAAGGAACAGTGTATATCCATGGTTGATCAATTTTTTAG 800
|||||||| || || || | || ||| || |||||||||||||||||||||||||||||
Sbjct 895 ACGTCCACCTGCGAAGGAACTAAGGGAGCAATGTATATCCATGGTTGATCAATTTTTTAG 954
Query 801 AAACTATATTGATGGACTACATGTAGATGAGTTCAAATCCATTACGAAAGAAGTCTGCAA 860
|||||||| || ||||| ||| | ||||| |||||||||||||| ||||||||||||||
Sbjct 955 TAACTATATAGACGGACTTCATATGGATGAATTCAAATCCATTACTAAAGAAGTCTGCAA 1014
Query 861 GCTGCCTTCTTTTCTCT-CTCCTGCACT-TTTCAGAAAGATCGATCAC-AATTGCACTGA 917
||||||||||||||| | || ||| ||| ||| |||||||| || ||| | | |||| |
Sbjct 1015 GCTGCCTTCTTTTCTTTCCT-CTGTACTATTT-AGAAAGATAGA-CACGAGTGGCACCGG 1071
Query 918 TATAGTTACAAGGGATGCGTTTATCAAGTATTGGATTGATGGAAATATGTTAACTATGGA 977
||| |||||||||||||| ||||||||||||||| |||||||| ||||||| | |||||
Sbjct 1072 TATCGTTACAAGGGATGCATTTATCAAGTATTGGGTTGATGGACATATGTTGGCAATGGA 1131
Query 978 CACAGCCTCCCAGATATATAATATACTAAGGCAG-CAGGGCTGCAAGTACCTCAGACAGG 1036
| |||||| |||||||||||||| |||||||| || || ||||||||||| |||||||
Sbjct 1132 CGTAGCCTCACAGATATATAATATTTTAAGGCAGCCA-GGTTGCAAGTACCTTAGACAGG 1190
Query 1037 CAGACTTCAAACCAGTTCTTGATGAGCTTCTGGCAACACATCCTGGGTTAGAATTTCTGA 1096
| |||||||||||||||||||||||||||||| |||| ||||| || || ||||| ||||
Sbjct 1191 CTGACTTCAAACCAGTTCTTGATGAGCTTCTGACAACTCATCCCGGCTTGGAATTCCTGA 1250
Query 1097 GGACGACAAGC-GAATTTCAAGAAAGATATGCTGAAACTGTCATCTACAGAATATTTTAC 1155
||| ||| | || |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1251 GGAATACAC-CTGAGTTTCAAGAAAGATATGCTGAGACCGTCATCTACAGAATATTTTAC 1309
Query 1156 TACATTAACAGATCCGGAACTGGTTGCCTTACTCTTAGAGAGCTGAAACGTGGAAATCTA 1215
||||| |||||||| || ||||||||| ||||||||||||||||||| ||||| |||||
Sbjct 1310 TACATAAACAGATCAGGTACTGGTTGCATTACTCTTAGAGAGCTGAAGCGTGGGAATCTT 1369
Query 1216 ATTGCTGCTATGCAACAACTTGATGAAGAGGACGACATCAATAAAATTATTAGGTACTTC 1275
||| |||| ||||||||| |||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1370 ATTACTGCCATGCAACAAGTTGATGAAGAAGACGACATCAATAAAGTTATTAGGTACTTC 1429
Query 1276 TCCTATGAGCACTTCTACGTCATATACTGCAAATTTTGGGAACTTGATGGTGACCATGAT 1335
||||||||||| |||||||| |||||||||| |||||||||||| ||||| |||||||||
Sbjct 1430 TCCTATGAGCATTTCTACGTGATATACTGCAGATTTTGGGAACTCGATGGCGACCATGAT 1489
Query 1336 TGT--TTAATTGATAAGGACAATCTCATCAAATATGGTAATAATGCCCTTACCTACAGGA 1393
| | ||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1490 T-TCCTTA-TTGATAAGGAAAATCTCATCAAATATGGTAATCATGCCCTTACCTACAGGA 1547
Query 1394 TTGTTGATAGAATATTTTCACAGGTTCCTAGGAAGTTTACGAGTAAAGTTGAAGGGAAGA 1453
|||| || |||||||||||||||||||||||||| ||||| || |||||||| |||||||
Sbjct 1548 TTGTCGACAGAATATTTTCACAGGTTCCTAGGAAATTTACAAGCAAAGTTGAGGGGAAGA 1607
Query 1454 TGAGTTATGAAGATTTTGTGTACTTCATTCTCGCCGAGGAAGACAAGTCTTCCGAGCCTA 1513
|||||||||||||||||| ||||| |||||||| ||||| || ||||| || |||||||
Sbjct 1608 TGAGTTATGAAGATTTTGCATACTTTATTCTCGCTGAGGAGGATAAGTCATCTGAGCCTA 1667
Query 1514 GTCTTGAGTATTGGTTCAAGTGTGTAGACTTGGATGAAAATGGCGTAATCACTCCAAACG 1573
|||||||||||||||||||||| ||||| | |||| | |||| || |||||||| ||||
Sbjct 1668 GTCTTGAGTATTGGTTCAAGTGCATAGACCTAGATGGAGATGGGGTGATCACTCCCAACG 1727
Query 1574 AAATGCAGttttttttCGAAGAGCAGCTGCATCGCATGGAATGCATAACCCAGGAAGCTG 1633
| ||||||||||| | ||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1728 AGATGCAGTTTTTCTACGAAGAGCAGCTGCATCGCATGGAATGTATAACCCAGGAACCTG 1787
Query 1634 TTCT-TTTCAGCGATATCCTATGTCAAATAATT-GACATGATTGGACCCGAGAAAGAAAA 1691
| || ||| | |||||||||||||||||| || ||||||||| ||| ||||| || ||
Sbjct 1788 TACTCTTTGAA-GATATCCTATGTCAAATA-TTCGACATGATTAAACCAGAGAAGGAGAA 1845
Query 1692 CTGCATCAC-CTTCCAGGATCTGAAAGGATCCAAACTTTCAGGAAACGTCTTCAATATAC 1750
||||||||| || |||||||||||||| |||||||||||| ||||| | ||||||||||
Sbjct 1846 CTGCATCACACT-CCAGGATCTGAAAGCATCCAAACTTTCTGGAAATATTTTCAATATAC 1904
Query 1751 TCTTCAACCTAAATAAATTCATGGCATTTGAAACACGTGACCCATTTCTCATTCGCCAGG 1810
|||| ||||| || ||||||||||| |||||||| |||||||| ||||||||||| ||||
Sbjct 1905 TCTTTAACCTGAACAAATTCATGGCGTTTGAAACCCGTGACCCTTTTCTCATTCGTCAGG 1964
Query 1811 AAAGGGAGGATCCAA-ATTTGACAGAGTGGGATCGATTCGCTCAGAGAGAGTATGTGAGA 1869
|| | ||| |||||| ||| ||| || ||||| ||||| ||||||||||||||||||||
Sbjct 1965 AACGTGAGAATCCAACATT-GACGGAATGGGACCGATTTGCTCAGAGAGAGTATGTGAGG 2023
Query 1870 TTGTCAATGGAGGAAGATGTAGATGAAGTCTCAAATGGGAGTGCAGATGTCTGGGATGAA 1929
|||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||
Sbjct 2024 TTGTCAATGGAGGAAGATGTGGAGGAAGTCTCGAATGGGAGTGCAGATGTTTGGGATGAA 2083
Query 1930 CCACTCGAACCTCCATTTTAGT 1951
||||||||| ||||||||||||
Sbjct 2084 CCACTCGAATCTCCATTTTAGT 2105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97037653485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5