BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470374
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03970.1 | Symbols: GBF4 | G-box binding factor 4 | chr1:101... 1489 0.0
AT1G03980.1 | Symbols: ATPCS2, PCS2 | phytochelatin synthase 2 ... 922 0.0
> AT1G03970.1 | Symbols: GBF4 | G-box binding factor 4 | chr1:1018100-1019247
FORWARD LENGTH=1148
Length=1148
Score = 1489 bits (806), Expect = 0.0
Identities = 932/991 (94%), Gaps = 16/991 (2%)
Strand=Plus/Plus
Query 63 AAATTCGTTCCAATTCCAGTGTGCTTCGGAAATGGCATCCTTCAAGTTGATGTCTTCTTC 122
||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||
Sbjct 107 AAATTCGTTCCAATTCCAGTGAGCTCCGGAAATGGCGTCCTTCAAGTTGATGTCTTCTTC 166
Query 123 CAATTCCGATC-TGTCTCGCCGTAATTCTTCTTCTGCTTCATCTTCCCCTTCTATAAGAT 181
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 CAATTCCGA-CTTGTCTCGCCGTAATTCTTCTTCTGCTTCATCTTCCCCTTCTATAAGAT 225
Query 182 CGTCGTCTCACCATCTCCGACCAAATCCTCTCGCCGATCACTCCCGAATCAGTTTCGCTT 241
| ||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 226 CATCG---CACCATCTCCGACCAAATCCTCACGCCGATCACTCCAGAATCAGTTTCGCTT 282
Query 242 ACGGCGGA-G-G-CAACGATTACACTTTCGCGTCTGATTCAAAGCCCTTCGAGATGGCGA 298
|||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 ACGGCGGAGGAGTCAACGATTACACTTTCGCGTCTGATTCAAAGCCCTTCGAGATGGCGA 342
Query 299 TTGATGTTGATCGGAGTATCGGAGATCGGAACAGCGTTAACAACGGTAAGAGTGTGGACG 358
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 343 TTGATGTTGATCGGAGTATCGGAGATCGGAACAGCGTTAACAACGGAAAGAGTGTTGACG 402
Query 359 ATGTTTGGAAAGAGATTGTATCTGGAGAGCAAAAGACCATCATGATGAAGGAGGAAGAAC 418
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 403 ATGTTTGGAAAGAGATTGTATCTGGAGAGCAAAAGACGATCATGATGAAGGAAGAAGAAC 462
Query 419 AAGAAGATATAATGACGCTTGAGGATTTCTTAGCCAAAGCAGCAATGGATGACGGAGGTT 478
||||||||||||||| ||||||||||||||||| ||||||| |||||| || |||| ||
Sbjct 463 CAGAAGATATAATGACACTTGAGGATTTCTTAGCGAAAGCAGAAATGGACGAGGGAGCTT 522
Query 479 CAGATGAAATTGATGTTAAGATTCCACCGGAGAGACTCAACAACGACGGTAGCTATACAT 538
|||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 523 CAGATGAAATCGATGTGAAGATTCCAACGGAGAGACTCAACAACGACGGTAGCTATACAT 582
Query 539 TCGATTTTCCGATGCAGCGACACAGTTCGTTTGAGATGATTGAAGGATCAATGGGTGGAG 598
| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 583 TTGATTTTCCGATGCAGCGACACAGTTCGTTCCAGATGGTTGAAGGATCAATGGGT---G 639
Query 599 GAGGAGGAACAATGAGAGGAAAGAGAGGGAGAGTGATGACGGAGGCAATGGATAAAGCTG 658
|||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 640 GAGGAGTAAC---GAGAGGAAAGAGAGGGAGAGTGATGATGGAGGCAATGGATAAAGCTG 696
Query 659 CAGCTCAGAGACAGAAGAGGATGATCAAGAACCGTGAATCCGCTGCCAGGTCTCGAGAGA 718
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 697 CAGCTCAGAGACAGAAGAGGATGATCAAGAACCGTGAATCCGCTGCTAGGTCTCGAGAGA 756
Query 719 GGAAACAGGCTTATCAAGTTGAGTTAGAGACTTTGGCTGCGAAATTAGAGGAAGAGAATG 778
|||||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||
Sbjct 757 GGAAACAGGCTTATCAGGTTGAGTTAGAGACTTTGGCTGCCAAGTTAGAGGAGGAGAATG 816
Query 779 AGCAGCTTTTGAAGGAGATTGAAGAGAGCACTAAAGAGAGATACAAGAAGCTCATGGAGG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 AGCAGCTTTTGAAGGAGATTGAAGAGAGCACTAAAGAGAGATACAAGAAGCTCATGGAGG 876
Query 839 TTCTGATTCCGGTCGATGAGAAACCAAGGCCACCATCTAGGCCCTTAAGCAGAAGCCATT 898
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 877 TTCTGATTCCGGTCGATGAGAAACCAAGGCCACCGTCGAGGCCCTTAAGCAGGAGCCATT 936
Query 899 CCTTGGAATGGTGAACAGTGGTAACAAAA-CTTTTGTATGTaaaaaaa-taaaaaCATAT 956
||||||||||||||| ||||||| |||| |||||||||||||||||| |||||||||||
Sbjct 937 CCTTGGAATGGTGAAGTGTGGTAAAAAAAACTTTTGTATGTAAAAAAAATAAAAACATAT 996
Query 957 GGGCTTGATTACTATATTATAATCTTTATAGTAAAGTGATGGTGATATGGTTACTACTTT 1016
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 997 GGGCTTGATTACTATATTATAATCTATATAGTAAAGTGATGGTGATATGGTTAGTACTTA 1056
Query 1017 GTTACCTGTAGTGTCTCTCAGGGATGTAATG 1047
|||||||||| ||| ||| ||||||||||||
Sbjct 1057 GTTACCTGTAATGTATCTAAGGGATGTAATG 1087
> AT1G03980.1 | Symbols: ATPCS2, PCS2 | phytochelatin synthase
2 | chr1:1018570-1022108 REVERSE LENGTH=2337
Length=2337
Score = 922 bits (499), Expect = 0.0
Identities = 583/623 (94%), Gaps = 8/623 (1%)
Strand=Plus/Minus
Query 427 ATAATGACGCTTGAGGATTTCTTAGCCAAAGCAGCAATGGATGACGGAGGTTCAGATGAA 486
|||||||| ||||||||||||||||| ||||||| |||||| || |||| ||||||||||
Sbjct 2337 ATAATGACACTTGAGGATTTCTTAGCGAAAGCAGAAATGGACGAGGGAGCTTCAGATGAA 2278
Query 487 ATTGATGTTAAGATTCCACCGGAGAGACTCAACAACGACGGTAGCTATACATTCGATTTT 546
|| ||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 2277 ATCGATGTGAAGATTCCAACGGAGAGACTCAACAACGACGGTAGCTATACATTTGATTTT 2218
Query 547 CCGATGCAGCGACACAGTTCGTTTGAGATGATTGAAGGATCAATGGGTGGAGGAGGAGGA 606
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| |
Sbjct 2217 CCGATGCAGCGACACAGTTCGTTCCAGATGGTTGAAGGATCAATGGGT---GGAGGAGTA 2161
Query 607 ACAATGAGAGGAAAGAGAGGGAGAGTGATGACGGAGGCAATGGATAAAGCTGCAGCTCAG 666
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2160 AC---GAGAGGAAAGAGAGGGAGAGTGATGATGGAGGCAATGGATAAAGCTGCAGCTCAG 2104
Query 667 AGACAGAAGAGGATGATCAAGAACCGTGAATCCGCTGCCAGGTCTCGAGAGAGGAAACAG 726
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2103 AGACAGAAGAGGATGATCAAGAACCGTGAATCCGCTGCTAGGTCTCGAGAGAGGAAACAG 2044
Query 727 GCTTATCAAGTTGAGTTAGAGACTTTGGCTGCGAAATTAGAGGAAGAGAATGAGCAGCTT 786
|||||||| ||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 2043 GCTTATCAGGTTGAGTTAGAGACTTTGGCTGCCAAGTTAGAGGAGGAGAATGAGCAGCTT 1984
Query 787 TTGAAGGAGATTGAAGAGAGCACTAAAGAGAGATACAAGAAGCTCATGGAGGTTCTGATT 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1983 TTGAAGGAGATTGAAGAGAGCACTAAAGAGAGATACAAGAAGCTCATGGAGGTTCTGATT 1924
Query 847 CCGGTCGATGAGAAACCAAGGCCACCATCTAGGCCCTTAAGCAGAAGCCATTCCTTGGAA 906
|||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 1923 CCGGTCGATGAGAAACCAAGGCCACCGTCGAGGCCCTTAAGCAGGAGCCATTCCTTGGAA 1864
Query 907 TGGTGAACAGTGGTAACAAAA-CTTTTGTATGTaaaaaaa-taaaaaCATATGGGCTTGA 964
||||||| ||||||| |||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1863 TGGTGAAGTGTGGTAAAAAAAACTTTTGTATGTAAAAAAAATAAAAACATATGGGCTTGA 1804
Query 965 TTACTATATTATAATCTTTATAGTAAAGTGATGGTGATATGGTTACTACTTTGTTACCTG 1024
||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1803 TTACTATATTATAATCTATATAGTAAAGTGATGGTGATATGGTTAGTACTTAGTTACCTG 1744
Query 1025 TAGTGTCTCTCAGGGATGTAATG 1047
|| ||| ||| ||||||||||||
Sbjct 1743 TAATGTATCTAAGGGATGTAATG 1721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51339298234
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5