BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470377
Length=886
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04000.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1136 0.0
> AT1G04000.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G44060.1);
Has 62 Blast hits to 62 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1028106-1029119
REVERSE LENGTH=1014
Length=1014
Score = 1136 bits (615), Expect = 0.0
Identities = 805/892 (90%), Gaps = 32/892 (4%)
Strand=Plus/Plus
Query 1 TTTTTCACCCTATTA-TTCGATTTGACTGTTTTACAACAGTCAATATTTCAAtttttttA 59
|||||||||| |||| || |||||||||||||||| |||||||||||||||||||| |||
Sbjct 148 TTTTTCACCCGATTATTTTGATTTGACTGTTTTACGACAGTCAATATTTCAATTTTATTA 207
Query 60 TTAGGTGCTGACGTGGCATGCATCCAATAGAGAATCCCCATGAACACCAAAACGATGCGT 119
|| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 208 TTGGGTGCTGACGTGGCATGCATCCAATAGAGTATCACCATGAACACCAAAACGATGCGT 267
Query 120 CTTCCCCCACGTCGCATTCTAACGGCGGATAAGCGCAAAGAAAGAGACGCCTGCCTCTCC 179
||||||||||||||| |||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 268 CTTCCCCCACGTCGCGTTCTAACGGCGGATAAGCGCAAAGAACGAGACGCCTTCATCTCC 327
Query 180 TCCGTCACCGATAAACCGCCGGAAATCGCCGTCCCCAAGTTTACCC-CACCGCCGGCGAA 238
|||||||||||||| ||||||||||||||| |||||| ||| | |||||| | ||
Sbjct 328 TCCGTCACCGATAATCCGCCGGAAATCGCC------AAGTTT-CCCTCTCCGCCGCCTAA 380
Query 239 TCTTGCTCCTCCGCCGGTTAATCCCATTTCCAGGAAATCTTCAATCGCAGCAGCCGAGCC 298
|||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 381 ACTTGTTCCTCCGCCGGTTAATCCCATTTCCAAGAAATCTTCAACCGCAGCAGCCGAGCC 440
Query 299 GGTCGGCTCGAACCAATTGATGTTAGCCGGTTATCTGAGCCACGAGTTCCTCACC-AACG 357
| |||||||||||||| |||||||||||||||||||||||||||||| ||||||| || |
Sbjct 441 GATCGGCTCGAACCAACTGATGTTAGCCGGTTATCTGAGCCACGAGTACCTCACCCAA-G 499
Query 358 GCACACTCTTCGGAGAGCAATGGAACCCGGCTCGAGCCCAAGCCGAGCCCAGGAA-AGTA 416
||||||||||||||||||||||||||| ||||||||||||||||||| |||| || | ||
Sbjct 500 GCACACTCTTCGGAGAGCAATGGAACCAGGCTCGAGCCCAAGCCGAGTCCAGTAAGA-TA 558
Query 417 AAGCCGAGCCATATTATTGAGCCGACTGAAGAAAGTGAGCCGAAACGGAAGAGGTAT-GT 475
||||||||||||| | |||||||| |||| ||| ||||||||||||||||||||||| |
Sbjct 559 AAGCCGAGCCATACTGTTGAGCCGGCTGAGGAATGTGAGCCGAAACGGAAGAGGTATAG- 617
Query 476 GGAGGTTGCTAATCTTCTCCGGTCAGACGGGGCCCATCTACCCGGCATCGTCAATCCTGC 535
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 618 GGAGGTTGCTAATCTTCTCCGGTCAGATGGGGCCCAACTGCCCGGCATCGTCAATCCTGC 677
Query 536 CCAGCTTGCCCGGTTTCTCAAACTGTGATCGGCGTAATCCAGTGTCCACGTGGAGATAGA 595
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 678 CCAGCTTGCCCGATTTCTCAAACTGTGATCGGCGTAATCCGGTGTCCACGTGGAGACAGA 737
Query 596 TCATTGGTTTGTCACCCGGCAAGCGAGACAGCGTTAAAACCGGAACCTTCCCCTTCGTCG 655
|||||||| |||| ||||||||||||||||| ||||||||| ||||||| ||| ||
Sbjct 738 TCATTGGTCTGTCGTCCGGCAAGCGAGACAGCCTTAAAACCGAAACCTTC---TTC-TC- 792
Query 656 TCTCTCTCtttttttcaaatattttttttA-AATCCTCTCTGTAAAGCTGActctctcgc 714
||||| | |||||||||||| ||||||| | ||||||||||||||||||||||| |||||
Sbjct 793 TCTCT-T-TTTTTTTCAAATGTTTTTTT-AGAATCCTCTCTGTAAAGCTGACTCGCTCGC 849
Query 715 tctctcttctctTCATCGTCTTCCTCAGAAATCAATTGAGAAAATTTAGGGTTTGTTGTT 774
||||||||||| |||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct 850 TCTCTCTTCTCATCATCGTCTTCCTCGGAAATCGACTGAGAAAATTTAGGGTTTGTTGTT 909
Query 775 GAAGTAGATGTTCTTGTTTTGTACATCAGAAATATCAATTAGCCAATGGATTATATTTTC 834
|| ||||||| || | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 910 GAGGTAGATGCTCCTCTTTTGTACATCAGAAATATCAATTAGCCAATGGATTATGTTTTC 969
Query 835 AAAATTGAACAGTCAAAGTTTAACCCTTTTCTCATTGTGTGTATGGATTTTG 886
| | | ||| |||| || |||||||||||| | ||||||||||||||||
Sbjct 970 AGA-T----CAG-CAAAATTGAACCCTTTTCTC-T-GTGTGTATGGATTTTG 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43251600567
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5