BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470379
Length=2349
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04020.1 | Symbols: ATBARD1, BARD1, ROW1 | breast cancer ass... 3356 0.0
> AT1G04020.1 | Symbols: ATBARD1, BARD1, ROW1 | breast cancer associated
RING 1 | chr1:1036537-1040224 FORWARD LENGTH=2397
Length=2397
Score = 3356 bits (1817), Expect = 0.0
Identities = 2215/2400 (92%), Gaps = 55/2400 (2%)
Strand=Plus/Plus
Query 1 GAAGTGCATCTTCTCCTTGTC-T-TCAGCTTCAAGAGCTTTCGTCGTTTAGATCT-GGTT 57
|||||||||||||||||| || | || | |||||||||||||||| ||||||||| ||||
Sbjct 1 GAAGTGCATCTTCTCCTTCTCTTCTCGGTTTCAAGAGCTTTCGTCATTTAGATCTGGGTT 60
Query 58 TT-TGGAT-ACTAATGGCGGAATTTACAAACATGCTGATGAATCCATGGGTTCTTCATCT 115
|| | || || ||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 61 TTGTACATCACCAATGGCGGAATTTACTAACATGCTAATGAATCCATGGGTTCTTCATCT 120
Query 116 CCAGAAGCTCGAGCTCGAGCTCAATTGCCCTCTATGCTTGAAATTGCTTAATCGACCGGT 175
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 121 CCAGAAGCTCGAGCTCGAGCTCAAGTGCCCTCTATGCTTAAAATTGCTTAATCGACCGGT 180
Query 176 GTTGCTTCCATGCGACCACGTCTTTTGCGATTCATGTGTACACAAATCGTCGCAAGTCGA 235
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 181 GTTGCTTCCTTGCGACCACGTCTTCTGCGATTCATGTGTACACAAATCGTCGCAAGTTGA 240
Query 236 AACAGGCTGTCCTGTCTGCAAATCTAAACATTCCAAAAAGTCTCGGAGGA-ATCTTCAAT 294
| | || |||||||||||||||||||||||| |||||||| || ||| || |||||| ||
Sbjct 241 ATCGGGATGTCCTGTCTGCAAATCTAAACATCCCAAAAAGGCTAGGA-GAGATCTTCGAT 299
Query 295 TTATGGAGAGTGTTATAAGCATATACAAAAGCTTGAATGCAGCTGTTAGTGTTCATCTCC 354
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 TCATGGAGAGTGTTATAAGCATATACAAGAGCTTGAATGCAGCTGTTAGTGTTCATCTCC 359
Query 355 CACAATTACAGATTCCGAATGATTGCAACTACAAG---GA--C---G----A-T---GC- 397
|||||||||||||||| |||||||||||||||||| || | | | | |
Sbjct 360 CACAATTACAGATTCCAAATGATTGCAACTACAAGAACGATGCATTGAACAATTCCAACA 419
Query 398 -CCCTAAACACGGCGGATCTGAAGATTCTGAGATGACTGATAAGGATGTGAGCAAGCGCA 456
||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 420 GCCCTAAACATGGCGAATCTGAAGATTCTGAGATGACTGACAAGGATGTGAGCAAGCGCA 479
Query 457 GTGGTGGTACTGATTCCTCCT-GTCGTGATGGTTCTCCTCTTCCGACTTCAGAAGAAAGC 515
||||||||||||||| || || ||||||||||||||||||||||||| |||||||||||
Sbjct 480 GTGGTGGTACTGATT-CTTCTAGTCGTGATGGTTCTCCTCTTCCGACCTCAGAAGAAAGT 538
Query 516 GATCCAAGACCTAAGCATCAGGATTGGACTGCTGAGCAGTTGCGTGATCATCTCTTATTA 575
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 539 GATCCAAGACCTAAGCATCAGGATTGGACTGAAAAGCAGTTGAGTGATCATCTCCTATTA 598
Query 576 TATGAGTTTGAATCAGAGAATGATGCTGGCAATCACACTCCGGAAAGTTATACAGGACAA 635
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||
Sbjct 599 TATGAGTTTGAATCAGAGTATGATGCTGCCAATCACACTCCGGAAAGTTATACAGAACAA 658
Query 636 GCTGCAAACAATGTGAGGGACATCAGTGCTTCTGAGCAGCCT-GCCAATGCTGCAAGGAA 694
|||||||| |||||||||||||||| |||||||||||||||| | |||||||||||||||
Sbjct 659 GCTGCAAAAAATGTGAGGGACATCACTGCTTCTGAGCAGCCTAG-CAATGCTGCAAGGAA 717
Query 695 GCGGATTTGTGGTGATTCCTTTATCCAGGAAAGCAATCCAAATCCTAAGACTCAGGATCA 754
|||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 718 GCGGATATGTGGTGATTCCTTTATCCAGGAAAGCAGTCCGAATCCTAAGACTCAGGATCC 777
Query 755 AACTTTGCTGCGGTTGATGGAGAGCCTCCGGTCAGATGATCCCACTGATTATGTTAAATC 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 778 GACTTTGCTGCGGTTGATGGAGAGCCTCCGGTCAGATGATCCCACTGATTATGTTAAAGC 837
Query 815 ACAGAAACATCAGCCGTTACCCAAGAGTCATACAGAACAAGATACTAAAAGGAAGCGTGA 874
|||||| ||||||| ||||||||| |||||||||||||||||| | ||||||||||||||
Sbjct 838 ACAGAACCATCAGCAGTTACCCAAAAGTCATACAGAACAAGATTCAAAAAGGAAGCGTGA 897
Query 875 CATCACCGCTTCCGAAGCAATGGAAAATCATCTGAAAGTTCCCAAGAGGGAGAAGAACCT 934
|||||||||||| || |||||||||||||||||||| || |||||||||||||| || ||
Sbjct 898 CATCACCGCTTCTGATGCAATGGAAAATCATCTGAAGGTCCCCAAGAGGGAGAATAATCT 957
Query 935 GATGCAAAAAGCTGCTGATATTGACTTCAATGATAAATGCTCTGCAAACTCTGATGATCA 994
|||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 958 GATGCAAAAATCTGCTGATATTGACTGCAATGGTAAATGCTCTGCAAACTCTGATGATCA 1017
Query 995 ACTAATTGAGAAAATCTCAAAGGCATCAG-ATAAACCACCATCCAACATAACTATTTGTG 1053
|||| |||||||||||||||||||| || | ||| || ||||||||||||| |||||||
Sbjct 1018 GCTAAGTGAGAAAATCTCAAAGGCATTAGAACAAA-CATCATCCAACATAACCATTTGTG 1076
Query 1054 GATTCTGCCAATCCGCTATGGTATCTGAGGCTACTGGAGAAATGCTGCATTACTCTAGGG 1113
| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1077 GTTTCTGCCAATCCGCTAGGGTATCTGAGGCCACTGGAGAAATGCTGCATTACTCTAGGG 1136
Query 1114 GAAGACCAGTGGTTGGAGATGACATCTTCCACTCCAATGTTATCCATGTCCATAGCGCAT 1173
||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1137 GAAGACCGGTGGATGGAGATGACATCTTCCGCTCCAATGTTATCCATGTCCATAGCGCAT 1196
Query 1174 GTATCGAATGGGCACCGCAAGTTTACTATGAAGGTGACACAGTGAAGAACCTGAAAGCAG 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GTATCGAATGGGCACCGCAAGTTTACTATGAAGGTGACACAGTGAAGAACCTGAAAGCAG 1256
Query 1234 AACTGGCAAGGGGGATGAAAATCAAGTGCACTAAATGTAGTCTGAAAGGAGCTGCCTTGG 1293
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1257 AACTGGCAAGGGGGATGAAAATCAAGTGCACTAAATGTAGTCTGAAAGGTGCTGCCTTAG 1316
Query 1294 GCTGCTATGTCAAGTCTTGCCGCCGAAGCTATCATGTTCCATGTGCAAGGGAGATTTCCA 1353
|||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 1317 GCTGCTTTGTCAAGTCTTGCCGTCGAAGCTATCATGTTCCATGTGCAAGAGAGATTTCTA 1376
Query 1354 GATGCCGTTGGGATTATGAAGACTTTCTTCTACTTTGTCCAGCTCATTCTTCTGTCAAAT 1413
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1377 GATGCCGTTGGGATTATGAAGATTTTCTTCTACTTTGTCCGGCTCATTCTTCTGTCAAAT 1436
Query 1414 TCCCAAACGAGAAGTCTGGACATCACGTATCCAGAGCTGAGCCCTTACCAAAAACAAATC 1473
|||| ||||||||||||||||||| ||| |||||||| |||||||||||||||| |||||
Sbjct 1437 TCCCGAACGAGAAGTCTGGACATCGCGTTTCCAGAGCCGAGCCCTTACCAAAAATAAATC 1496
Query 1474 CTGCTGAGCTATGTTCTTTGGAAAAAACACCAGCTATTACAAAAGAGCTCGTTCTCTGTG 1533
||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||
Sbjct 1497 CTGCTGAGCTATGTTCTTTGGAACAAACACCAGCTTTTACAAAAGAGCTTGTTCTCTGTG 1556
Query 1534 GATCAGCACTCTCTAAAAGTGATAAGAACCTGATGGAAAGTTTAGCTGTTAAATTCAATG 1593
|||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| || |
Sbjct 1557 GATCAGCACTCTCTAAAAGTGATAAGAAACTGATGGAAAGTTTAGCCGTTCGATTTAACG 1616
Query 1594 CAACCATATCAAGGTACTGGAACCCAAGTGTTACACATGTGATTGCTTCTACAGACGAAA 1653
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1617 CGACCATATCAAGGTACTGGAACCCAAGTGTTACACATGTGATTGCTTCTACAGATGAAA 1676
Query 1654 AAGGAGCATGCACAAGAACTTTGAAGGTTCTTATGGGTATTCTCAATGGAAAATGGATTA 1713
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 AAGGAGCTTGCACAAGAACTTTGAAGGTTCTTATGGGTATTCTCAATGGAAAATGGATTA 1736
Query 1714 TCAATGCAGATTGGATGAAAGCAAGCCTTGAAGCTTCTCAACCTGTTGATGAAGAACCAT 1773
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1737 TCAATGCAGCTTGGATGAAAGCAAGCCTAAAAGCTTCTCAACCTGTTGATGAAGAACCAT 1796
Query 1774 TTGAGATTCATATTGATACTCAAGGATGTCAAGATGGACCAAAAACCGCAAGACTCAGAG 1833
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 TCGAGATTCAAATTGATACTCAAGGATGTCAAGATGGACCAAAAACCGCAAGACTCAGAG 1856
Query 1834 CAGAAACTAATAAACCAAAGCTCTTTGATGGCTTGAAGTTTTATTTCTTTGGAGAATTCG 1893
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 1857 CAGAAACTAATAAACCAAAGCTCTTTGAGGGCTTGAAGTTCTATTTCTTTGGAGATTTCT 1916
Query 1894 ATAAAGGATACAAAGAAGACCTTCAGAATCTAGTAAAAGTAGCTGGTGGGACGGCCTTGA 1953
||||||||||||| |||||||||||||||||||| ||||| |||||||| || |||||
Sbjct 1917 ATAAAGGATACAAGGAAGACCTTCAGAATCTAGTCAAAGTCGCTGGTGGTACAATCTTGA 1976
Query 1954 ACACAGAGGATGAGCTTGGTGCAGAAAGCAGCAACACTGTCAATGACCAAAGATCATCAT 2013
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1977 ACACAGAGGATGAGCTTGGTGCAGAAAGCAGCAACAATGTCAATGACCAAAGATCATCAT 2036
Query 2014 CGATTGTGGTTTACAACATTGATCCTCCACTTGGATGTGCCTTAGGTGAAGAAGTCACGA 2073
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 2037 CGATTGTGGTTTACAACATTGATCCTCCACATGGATGTGCCTTAGGTGAAGAAGTCACAA 2096
Query 2074 TTATTTGGCAACGAGCTAATGACGCAGAAGCTTTAGCAAGCCAAACTGGGTCTCGTCTCG 2133
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2097 TCATTTGGCAACGAGCTAATGACGCAGAAGCTTTAGCAAGCCAAACTGGGTCTCGTCTCG 2156
Query 2134 TTGGTCACACATGGCTCTTGGCGTCCATTGCTGGTTACAAGTTACATCCTGTGATTAGCT 2193
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 2157 TTGGTCACACATGGGTCTTGGAGTCCATTGCTGGTTACAAGTTACATCCTGTGATTGGCT 2216
Query 2194 AATTTT-GAG-AA-AGA-----GACA----AA-------A-ACATATGTAACATTGTTTA 2233
||||| ||| || ||| |||| || | ||||||||||||| |||||
Sbjct 2217 AATTTAAGAGGAAGAGACAAAAGACATTTCAATTTCCCTACACATATGTAACATAGTTTA 2276
Query 2234 ATTTCACT-TTTA--ATTTCGTAAGATAACAAAACAGATTCTTGTTTGTACGCATATAAA 2290
|||| ||| ||| |||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 2277 ATTTTACTATTTTTGATTTCGTAAGATAACAAAACAGATTCGTGTTTGAACGCATATAAA 2336
Query 2291 TTTC-AACTTTTACTTTGGAAAAACAAAGCTTTGTAACTTAAATTTTGGAAATCTTACCG 2349
||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2337 ATTCCAACTTTTACTTTCGAAAAACAAAGCTTTGTAACTTAAAGTTTGGAAATCTTACCG 2396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116615866035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5