BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470379 Length=2349 Score E Sequences producing significant alignments: (Bits) Value AT1G04020.1 | Symbols: ATBARD1, BARD1, ROW1 | breast cancer ass... 3356 0.0 > AT1G04020.1 | Symbols: ATBARD1, BARD1, ROW1 | breast cancer associated RING 1 | chr1:1036537-1040224 FORWARD LENGTH=2397 Length=2397 Score = 3356 bits (1817), Expect = 0.0 Identities = 2215/2400 (92%), Gaps = 55/2400 (2%) Strand=Plus/Plus Query 1 GAAGTGCATCTTCTCCTTGTC-T-TCAGCTTCAAGAGCTTTCGTCGTTTAGATCT-GGTT 57 |||||||||||||||||| || | || | |||||||||||||||| ||||||||| |||| Sbjct 1 GAAGTGCATCTTCTCCTTCTCTTCTCGGTTTCAAGAGCTTTCGTCATTTAGATCTGGGTT 60 Query 58 TT-TGGAT-ACTAATGGCGGAATTTACAAACATGCTGATGAATCCATGGGTTCTTCATCT 115 || | || || ||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 61 TTGTACATCACCAATGGCGGAATTTACTAACATGCTAATGAATCCATGGGTTCTTCATCT 120 Query 116 CCAGAAGCTCGAGCTCGAGCTCAATTGCCCTCTATGCTTGAAATTGCTTAATCGACCGGT 175 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 121 CCAGAAGCTCGAGCTCGAGCTCAAGTGCCCTCTATGCTTAAAATTGCTTAATCGACCGGT 180 Query 176 GTTGCTTCCATGCGACCACGTCTTTTGCGATTCATGTGTACACAAATCGTCGCAAGTCGA 235 ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 181 GTTGCTTCCTTGCGACCACGTCTTCTGCGATTCATGTGTACACAAATCGTCGCAAGTTGA 240 Query 236 AACAGGCTGTCCTGTCTGCAAATCTAAACATTCCAAAAAGTCTCGGAGGA-ATCTTCAAT 294 | | || |||||||||||||||||||||||| |||||||| || ||| || |||||| || Sbjct 241 ATCGGGATGTCCTGTCTGCAAATCTAAACATCCCAAAAAGGCTAGGA-GAGATCTTCGAT 299 Query 295 TTATGGAGAGTGTTATAAGCATATACAAAAGCTTGAATGCAGCTGTTAGTGTTCATCTCC 354 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 300 TCATGGAGAGTGTTATAAGCATATACAAGAGCTTGAATGCAGCTGTTAGTGTTCATCTCC 359 Query 355 CACAATTACAGATTCCGAATGATTGCAACTACAAG---GA--C---G----A-T---GC- 397 |||||||||||||||| |||||||||||||||||| || | | | | | Sbjct 360 CACAATTACAGATTCCAAATGATTGCAACTACAAGAACGATGCATTGAACAATTCCAACA 419 Query 398 -CCCTAAACACGGCGGATCTGAAGATTCTGAGATGACTGATAAGGATGTGAGCAAGCGCA 456 ||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 420 GCCCTAAACATGGCGAATCTGAAGATTCTGAGATGACTGACAAGGATGTGAGCAAGCGCA 479 Query 457 GTGGTGGTACTGATTCCTCCT-GTCGTGATGGTTCTCCTCTTCCGACTTCAGAAGAAAGC 515 ||||||||||||||| || || ||||||||||||||||||||||||| ||||||||||| Sbjct 480 GTGGTGGTACTGATT-CTTCTAGTCGTGATGGTTCTCCTCTTCCGACCTCAGAAGAAAGT 538 Query 516 GATCCAAGACCTAAGCATCAGGATTGGACTGCTGAGCAGTTGCGTGATCATCTCTTATTA 575 ||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| Sbjct 539 GATCCAAGACCTAAGCATCAGGATTGGACTGAAAAGCAGTTGAGTGATCATCTCCTATTA 598 Query 576 TATGAGTTTGAATCAGAGAATGATGCTGGCAATCACACTCCGGAAAGTTATACAGGACAA 635 |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||| Sbjct 599 TATGAGTTTGAATCAGAGTATGATGCTGCCAATCACACTCCGGAAAGTTATACAGAACAA 658 Query 636 GCTGCAAACAATGTGAGGGACATCAGTGCTTCTGAGCAGCCT-GCCAATGCTGCAAGGAA 694 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||||| Sbjct 659 GCTGCAAAAAATGTGAGGGACATCACTGCTTCTGAGCAGCCTAG-CAATGCTGCAAGGAA 717 Query 695 GCGGATTTGTGGTGATTCCTTTATCCAGGAAAGCAATCCAAATCCTAAGACTCAGGATCA 754 |||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 718 GCGGATATGTGGTGATTCCTTTATCCAGGAAAGCAGTCCGAATCCTAAGACTCAGGATCC 777 Query 755 AACTTTGCTGCGGTTGATGGAGAGCCTCCGGTCAGATGATCCCACTGATTATGTTAAATC 814 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 778 GACTTTGCTGCGGTTGATGGAGAGCCTCCGGTCAGATGATCCCACTGATTATGTTAAAGC 837 Query 815 ACAGAAACATCAGCCGTTACCCAAGAGTCATACAGAACAAGATACTAAAAGGAAGCGTGA 874 |||||| ||||||| ||||||||| |||||||||||||||||| | |||||||||||||| Sbjct 838 ACAGAACCATCAGCAGTTACCCAAAAGTCATACAGAACAAGATTCAAAAAGGAAGCGTGA 897 Query 875 CATCACCGCTTCCGAAGCAATGGAAAATCATCTGAAAGTTCCCAAGAGGGAGAAGAACCT 934 |||||||||||| || |||||||||||||||||||| || |||||||||||||| || || Sbjct 898 CATCACCGCTTCTGATGCAATGGAAAATCATCTGAAGGTCCCCAAGAGGGAGAATAATCT 957 Query 935 GATGCAAAAAGCTGCTGATATTGACTTCAATGATAAATGCTCTGCAAACTCTGATGATCA 994 |||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 958 GATGCAAAAATCTGCTGATATTGACTGCAATGGTAAATGCTCTGCAAACTCTGATGATCA 1017 Query 995 ACTAATTGAGAAAATCTCAAAGGCATCAG-ATAAACCACCATCCAACATAACTATTTGTG 1053 |||| |||||||||||||||||||| || | ||| || ||||||||||||| ||||||| Sbjct 1018 GCTAAGTGAGAAAATCTCAAAGGCATTAGAACAAA-CATCATCCAACATAACCATTTGTG 1076 Query 1054 GATTCTGCCAATCCGCTATGGTATCTGAGGCTACTGGAGAAATGCTGCATTACTCTAGGG 1113 | |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 1077 GTTTCTGCCAATCCGCTAGGGTATCTGAGGCCACTGGAGAAATGCTGCATTACTCTAGGG 1136 Query 1114 GAAGACCAGTGGTTGGAGATGACATCTTCCACTCCAATGTTATCCATGTCCATAGCGCAT 1173 ||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1137 GAAGACCGGTGGATGGAGATGACATCTTCCGCTCCAATGTTATCCATGTCCATAGCGCAT 1196 Query 1174 GTATCGAATGGGCACCGCAAGTTTACTATGAAGGTGACACAGTGAAGAACCTGAAAGCAG 1233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1197 GTATCGAATGGGCACCGCAAGTTTACTATGAAGGTGACACAGTGAAGAACCTGAAAGCAG 1256 Query 1234 AACTGGCAAGGGGGATGAAAATCAAGTGCACTAAATGTAGTCTGAAAGGAGCTGCCTTGG 1293 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 1257 AACTGGCAAGGGGGATGAAAATCAAGTGCACTAAATGTAGTCTGAAAGGTGCTGCCTTAG 1316 Query 1294 GCTGCTATGTCAAGTCTTGCCGCCGAAGCTATCATGTTCCATGTGCAAGGGAGATTTCCA 1353 |||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||| | Sbjct 1317 GCTGCTTTGTCAAGTCTTGCCGTCGAAGCTATCATGTTCCATGTGCAAGAGAGATTTCTA 1376 Query 1354 GATGCCGTTGGGATTATGAAGACTTTCTTCTACTTTGTCCAGCTCATTCTTCTGTCAAAT 1413 |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 1377 GATGCCGTTGGGATTATGAAGATTTTCTTCTACTTTGTCCGGCTCATTCTTCTGTCAAAT 1436 Query 1414 TCCCAAACGAGAAGTCTGGACATCACGTATCCAGAGCTGAGCCCTTACCAAAAACAAATC 1473 |||| ||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||| Sbjct 1437 TCCCGAACGAGAAGTCTGGACATCGCGTTTCCAGAGCCGAGCCCTTACCAAAAATAAATC 1496 Query 1474 CTGCTGAGCTATGTTCTTTGGAAAAAACACCAGCTATTACAAAAGAGCTCGTTCTCTGTG 1533 ||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||| Sbjct 1497 CTGCTGAGCTATGTTCTTTGGAACAAACACCAGCTTTTACAAAAGAGCTTGTTCTCTGTG 1556 Query 1534 GATCAGCACTCTCTAAAAGTGATAAGAACCTGATGGAAAGTTTAGCTGTTAAATTCAATG 1593 |||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| || | Sbjct 1557 GATCAGCACTCTCTAAAAGTGATAAGAAACTGATGGAAAGTTTAGCCGTTCGATTTAACG 1616 Query 1594 CAACCATATCAAGGTACTGGAACCCAAGTGTTACACATGTGATTGCTTCTACAGACGAAA 1653 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1617 CGACCATATCAAGGTACTGGAACCCAAGTGTTACACATGTGATTGCTTCTACAGATGAAA 1676 Query 1654 AAGGAGCATGCACAAGAACTTTGAAGGTTCTTATGGGTATTCTCAATGGAAAATGGATTA 1713 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1677 AAGGAGCTTGCACAAGAACTTTGAAGGTTCTTATGGGTATTCTCAATGGAAAATGGATTA 1736 Query 1714 TCAATGCAGATTGGATGAAAGCAAGCCTTGAAGCTTCTCAACCTGTTGATGAAGAACCAT 1773 ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1737 TCAATGCAGCTTGGATGAAAGCAAGCCTAAAAGCTTCTCAACCTGTTGATGAAGAACCAT 1796 Query 1774 TTGAGATTCATATTGATACTCAAGGATGTCAAGATGGACCAAAAACCGCAAGACTCAGAG 1833 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1797 TCGAGATTCAAATTGATACTCAAGGATGTCAAGATGGACCAAAAACCGCAAGACTCAGAG 1856 Query 1834 CAGAAACTAATAAACCAAAGCTCTTTGATGGCTTGAAGTTTTATTTCTTTGGAGAATTCG 1893 |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| Sbjct 1857 CAGAAACTAATAAACCAAAGCTCTTTGAGGGCTTGAAGTTCTATTTCTTTGGAGATTTCT 1916 Query 1894 ATAAAGGATACAAAGAAGACCTTCAGAATCTAGTAAAAGTAGCTGGTGGGACGGCCTTGA 1953 ||||||||||||| |||||||||||||||||||| ||||| |||||||| || ||||| Sbjct 1917 ATAAAGGATACAAGGAAGACCTTCAGAATCTAGTCAAAGTCGCTGGTGGTACAATCTTGA 1976 Query 1954 ACACAGAGGATGAGCTTGGTGCAGAAAGCAGCAACACTGTCAATGACCAAAGATCATCAT 2013 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1977 ACACAGAGGATGAGCTTGGTGCAGAAAGCAGCAACAATGTCAATGACCAAAGATCATCAT 2036 Query 2014 CGATTGTGGTTTACAACATTGATCCTCCACTTGGATGTGCCTTAGGTGAAGAAGTCACGA 2073 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 2037 CGATTGTGGTTTACAACATTGATCCTCCACATGGATGTGCCTTAGGTGAAGAAGTCACAA 2096 Query 2074 TTATTTGGCAACGAGCTAATGACGCAGAAGCTTTAGCAAGCCAAACTGGGTCTCGTCTCG 2133 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2097 TCATTTGGCAACGAGCTAATGACGCAGAAGCTTTAGCAAGCCAAACTGGGTCTCGTCTCG 2156 Query 2134 TTGGTCACACATGGCTCTTGGCGTCCATTGCTGGTTACAAGTTACATCCTGTGATTAGCT 2193 |||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 2157 TTGGTCACACATGGGTCTTGGAGTCCATTGCTGGTTACAAGTTACATCCTGTGATTGGCT 2216 Query 2194 AATTTT-GAG-AA-AGA-----GACA----AA-------A-ACATATGTAACATTGTTTA 2233 ||||| ||| || ||| |||| || | ||||||||||||| ||||| Sbjct 2217 AATTTAAGAGGAAGAGACAAAAGACATTTCAATTTCCCTACACATATGTAACATAGTTTA 2276 Query 2234 ATTTCACT-TTTA--ATTTCGTAAGATAACAAAACAGATTCTTGTTTGTACGCATATAAA 2290 |||| ||| ||| |||||||||||||||||||||||||| |||||| ||||||||||| Sbjct 2277 ATTTTACTATTTTTGATTTCGTAAGATAACAAAACAGATTCGTGTTTGAACGCATATAAA 2336 Query 2291 TTTC-AACTTTTACTTTGGAAAAACAAAGCTTTGTAACTTAAATTTTGGAAATCTTACCG 2349 ||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 2337 ATTCCAACTTTTACTTTCGAAAAACAAAGCTTTGTAACTTAAAGTTTGGAAATCTTACCG 2396 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 116615866035 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5