BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470382
Length=1066
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04040.1 | Symbols: | HAD superfamily, subfamily IIIB acid ... 1567 0.0
AT5G44020.1 | Symbols: | HAD superfamily, subfamily IIIB acid ... 440 1e-122
AT1G04030.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 274 1e-72
> AT1G04040.1 | Symbols: | HAD superfamily, subfamily IIIB acid
phosphatase | chr1:1042362-1043864 REVERSE LENGTH=1063
Length=1063
Score = 1567 bits (848), Expect = 0.0
Identities = 1001/1073 (93%), Gaps = 18/1073 (2%)
Strand=Plus/Plus
Query 1 ACACTTGTGATCAAAATCTCAAGATCCAAAA-AC-TCTTTCAAACATGGACCGAACCATG 58
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1 ACACTTGTGATCAAAATCTCAAGATCCAAAACTCTTCTTTCAAACATGGACCGAACCATG 60
Query 59 TTTCTTTCCTTGGCACTAGCCTCACTCTTTGTCGGAGTCGTCTCCGCTGGTGACTGGAAC 118
||||||||| || || ||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 61 TTTCTTTCCCTGACAATAGCCTCACTCTTGGTCGGAGTCGTCTCAGCTGGTGACTGGAAC 120
Query 119 ATCTTGAACCAACTCAAAGGACTCGGTTCGTCCTCAAGCCAAAACGGTATCGTTTCTAAA 178
|||||||||||||||| ||||||||| || || ||||||||||| |||||||||||||||
Sbjct 121 ATCTTGAACCAACTCAGAGGACTCGGCTCATCGTCAAGCCAAAATGGTATCGTTTCTAAA 180
Query 179 GGGATCAAGACGGACCTGAAAGGATACTGTGAAAGCTGGAGGATCAACGTGGAAGTTCAC 238
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGTATCAAGACGGACCTGAAAGGATACTGTGAAAGCTGGAGGATCAACGTGGAAGTTCAC 240
Query 239 AACATCAGAAACTTCGATGTGGTGCCTCAAGAGTGTGTATCTCACATCGAGGATTACATG 298
||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 241 AACATCAGAAAGTTCGATGTGGTGCCTCAAGAGTGTGTATCGCACATTAAGGATTACATG 300
Query 299 ACGTCATCGCAGTACAAGGATGACGTGGCGAGAACCGTTGATGAGGTCATTCTTCATTTC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACGTCATCGCAGTACAAGGATGACGTGGCGAGAACCGTTGATGAGGTCATTCTTCATTTC 360
Query 359 GGAAGTATGTGTTGTAGCAAGACTAAGTGTGATGGCATGGACGCTTGGATCTTTGATGTC 418
|| || ||||| ||||||||| |||||||||| |||||||||||||||||||||||| ||
Sbjct 361 GGGAGCATGTGCTGTAGCAAGTCTAAGTGTGACGGCATGGACGCTTGGATCTTTGATATC 420
Query 419 GATGACACACTTCTCTCTACCATACCTTACCACAAGAAAAATGGCTTCTTCGGAGGAGAG 478
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 GATGACACGCTTCTCTCTACCATCCCTTACCACAAGAAAAATGGCTTCTTCGGAGGAGAG 480
Query 479 AAATTGAACTCAACGAAATTCGAGGATTGGATGA-AGAAGAAGAAAGCACCAGCAGTGCC 537
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 481 AAATTGAACTCAACGAAATTCGAGGATTGGAT-ACAGAAGAAGAAAGCACCAGCAGTGCC 539
Query 538 ACACATGAAGAAATTGTACCATGAGATCAGAGAAAGAGGCATTAAGATCTTCTTGATCTC 597
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 540 ACACATGAAGAAATTGTACCACGACATCAGAGAAAGAGGCATTAAGATCTTCTTGATCTC 599
Query 598 TTCCCGGAAAGAATATCTCAGGTCTGCCACCGTCGACAACCTCATCCAAGCCGGTTACTA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTCCCGGAAAGAATATCTCAGGTCTGCCACCGTCGACAACCTCATCCAAGCCGGTTACTA 659
Query 658 TGGCTGGTCCAACCTAATGCTCAGGGGGCTAGAAGATGAGCAAAAGGAAGTGAAACAATA 717
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 660 TGGCTGGTCCAACCTAATGCTCAGGGGGCTAGAAGATCAGCAAAAGGAAGTGAAACAATA 719
Query 718 CAAGTCAGAAAAGAGAACATGGCTGATGAGTCTTGGTTACAGAGTTTGGGGAGTGATGGG 777
||||||||| ||||||| |||||| |||||||||||||||||||| ||||||||||||||
Sbjct 720 CAAGTCAGAGAAGAGAAAATGGCTAATGAGTCTTGGTTACAGAGTCTGGGGAGTGATGGG 779
Query 778 AGACCAATGGAGCAGCTTTGCAGGTTGTCCTCTTCCTAAGAGAACCTTCAAGCTCCCTAA 837
||||||||||| ||||||||||| ||||||||||| | |||||||||||||||||||||
Sbjct 780 TGACCAATGGAGTAGCTTTGCAGGCTGTCCTCTTCCCAGGAGAACCTTCAAGCTCCCTAA 839
Query 838 CTCCATCTACTATGTCGCCTGATCAAAACCAAACACAAAACTTTGATTTAGCTTCTTTGA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 840 CTCCATCTACTATGTCGCCTGATCAAAACCAAACACAAAACTTTGATTTAGCTTCAAACA 899
Query 898 ACAAGAAGAATCTGCGAATAAGAGAGAGCAGttttgattctgtttttttgttt-tcttcc 956
| |||||||||| ||||||||||||||| ||||||| ||||||| || |||| | ||||
Sbjct 900 AAAAGAAGAATCCACGAATAAGAGAGAGCTGTTTTGAATCTGTTTCTT-GTTTATTTTCC 958
Query 957 cctttt-ctgtgtcatttttATATTAAGAGACGTATTG-ATAACAAA-GAACAAACAAAT 1013
|||||| | ||||||| || ||||| |||||| ||| | || |||| ||||||||||||
Sbjct 959 CCTTTTTC-GTGTCATATT-ATATTGAGAGACTTAT-GCATC-CAAAAGAACAAACAAAT 1014
Query 1014 AGAATGATTATACGTAACAGAGAGAAATCAAATCAAAATCACACAGTACCAAC 1066
| | ||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 1015 -G---G-TTATATGTAACAGAGAGAAATCAAATCAAAATCACACATTATCAAC 1062
> AT5G44020.1 | Symbols: | HAD superfamily, subfamily IIIB acid
phosphatase | chr5:17712409-17714336 FORWARD LENGTH=1133
Length=1133
Score = 440 bits (238), Expect = 1e-122
Identities = 548/693 (79%), Gaps = 40/693 (6%)
Strand=Plus/Plus
Query 192 ACCTGAAA-GGATACTGTGAAAGCTGGAGGA-TCAACGTGGAAG-TTCACAACATCAGAA 248
|||| ||| ||||||||||| ||||||| || ||||||||| || || ||||||| ||
Sbjct 176 ACCT-AAACGGATACTGTGAGAGCTGGA-GAGTCAACGTGG-AGCTTAACAACATAAGGG 232
Query 249 ACTTCGATGTGGTGCCTCAAGAGTGTGTAT-CTCACATCGAGGATTACATGACGTCATCG 307
|||| | ||||| || || || ||||||| | | || | | |||||||| |||||
Sbjct 233 ACTTTAAGGTGGTTCCACAGGAATGTGTATGGT-TCGTCCAAAAGTACATGACCTCATCT 291
Query 308 CAGTAC-AAGGATGACGTGGCGAGAACCGTTGATGAGGTCATTCTTC-ATTTCGGAAGTA 365
|| ||| || |||||||||| |||| |||| ||||| | || || || | |||||| |
Sbjct 292 CAATACGAA-GATGACGTGGAGAGAGCCGTCGATGAAGCCA-TCCTCTACCTCGGAAAAA 349
Query 366 -TGTGTTG-TAGCAAGACTA-AGTGTGATGGCATGGACGCTTGGATCTTTGATGTCGATG 422
| ||||| || |||| | | || ||||||||||| |||||||||||||| | ||||
Sbjct 350 CT-TGTTGCGAG-AAGAAGACA-TGCGATGGCATGGATGCTTGGATCTTTGACATTGATG 406
Query 423 ACACACTTCTCTCTACCATACCTTACCACAAGAAAAATGGCTT-CTTCGGAGGAGAGAAA 481
|||| |||||||| ||||| ||||||||||||| || || || ||||| || ||| ||
Sbjct 407 ACACTCTTCTCTCAACCATTCCTTACCACAAGAGCAACGG-TTGTTTCGGTGGTGAGCAA 465
Query 482 TTGAACTCAACGAAATTCGAGGATTGG-ATGAAGAAGAAG-AAAGCACCAGCAGTGCCAC 539
||||| | || || |||||||| ||| | || | | || |||||||| || ||||
Sbjct 466 CTGAACACGACCAAGTTCGAGGAATGGCA-AAATTCG-GGCAAGGCACCAGCGGTTCCAC 523
Query 540 ACATGAAGAAATTGTACCATGAGATCAGAGAAAGAGGCATT-AAGATCTTCTTGATCTCT 598
||||| ||| |||||||||||||||||||| ||||| || |||||||| |||||||||
Sbjct 524 ACATGGTGAAGTTGTACCATGAGATCAGAGAGAGAGG-TTTCAAGATCTTTTTGATCTCT 582
Query 599 TCCCGGAAAGAATATCTCAGGTCTGCCACCGTCGACAACCTCATCCAAGCCGGTTACTAT 658
|| || ||||| |||||||| |||||||||||||| || || || ||||||||||| |
Sbjct 583 TCTCGTAAAGAGTATCTCAGATCTGCCACCGTCGAAAATCTTATTGAAGCCGGTTACCAC 642
Query 659 GGCTGGTCCAACCTAATGCTCAGGGGGCTAGAAGATGA-GCAAAAG--GA-AGTGAAACA 714
||||||| ||||| | || | |||| ||||||||| | ||||| || |||| ||
Sbjct 643 AGCTGGTCTAACCTCCTTCTGA-GGGG--AGAAGATGATG-AAAAGAAGAGTGTGAGCCA 698
Query 715 ATAC-AAGTCAGAAAAGAGAACATGGCTGATGAGTCTTGGTTACAGAGTTTGGGGAGTGA 773
|||| ||| |||| ||| |||||||| | |||||||| |||||||||||||||||||
Sbjct 699 ATACAAAG-CAGATTTGAGGACATGGCTTACAAGTCTTGGGTACAGAGTTTGGGGAGTGA 757
Query 774 TGGGAGAC-CAATGGAGCAGCTT-TGCAGGTTGTCCTCTTCCTAAGAGAACCTTCAAGCT 831
|||| | | ||||||| |||||| | | |||||||| |||| |||||||||||||||||
Sbjct 758 TGGGTG-CACAATGGAACAGCTTCT-CTGGTTGTCCAGTTCCCAAGAGAACCTTCAAGCT 815
Query 832 CCCTAACTCCATCTACTATGTCGCCTGATCAAA 864
||||||||||||||||||||||||||||| |||
Sbjct 816 CCCTAACTCCATCTACTATGTCGCCTGATTAAA 848
> AT1G04030.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G44040.1);
Has 1835 Blast hits to 1511 proteins in 238 species: Archae
- 7; Bacteria - 164; Metazoa - 377; Fungi - 135; Plants -
187; Viruses - 22; Other Eukaryotes - 943 (source: NCBI BLink).
| chr1:1040383-1042892 FORWARD LENGTH=1846
Length=1846
Score = 274 bits (148), Expect = 1e-72
Identities = 168/178 (94%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 679 CAGGGGGCTAGAAGATGAGCAAAAGGAAGTGAAACAATACAAGTCAGAAAAGAGAACATG 738
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1698 CAGGGGGCTAGAAGATCAGCAAAAGGAAGTGAAACAATACAAGTCAGAGAAGAGAAAATG 1639
Query 739 GCTGATGAGTCTTGGTTACAGAGTTTGGGGAGTGATGGGAGACCAATGGAGCAGCTTTGC 798
||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 1638 GCTAATGAGTCTTGGTTACAGAGTCTGGGGAGTGATGGGTGACCAATGGAGTAGCTTTGC 1579
Query 799 AGGTTGTCCTCTTCCTAAGAGAACCTTCAAGCTCCCTAACTCCATCTACTATGTCGCC 856
||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 AGGCTGTCCTCTTCCCAGGAGAACCTTCAAGCTCCCTAACTCCATCTACTATGTCGCC 1521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52208566800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5