BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470383
Length=2584
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04050.1 | Symbols: SUVR1, SDG13 | homolog of SU(var)3-9 1 |... 2737 0.0
> AT1G04050.1 | Symbols: SUVR1, SDG13 | homolog of SU(var)3-9 1
| chr1:1045598-1049297 REVERSE LENGTH=2675
Length=2675
Score = 2737 bits (1482), Expect = 0.0
Identities = 1814/1971 (92%), Gaps = 36/1971 (2%)
Strand=Plus/Plus
Query 480 AACAAAGAGGATCCCAAGACTCAGCCTGAAGAGGAAGAGGAAGATGAAGATGATGATGTG 539
||||| ||||||| |||||| |||||| |||||||||||||||||||||| ||||
Sbjct 501 AACAACGAGGATCTCAAGACACAGCCT------GAAGAGGAAGATGAAGATGATGGTGTG 554
Query 540 ACTGAATTACCTCCGTTAAAGAGGTACTTACGCAGAAGTGGTGAAAGAGGATTGGCAATG 599
||||||||||||||||||||||||||| ||||||||| ||||||| |||| |||||||||
Sbjct 555 ACTGAATTACCTCCGTTAAAGAGGTACGTACGCAGAAATGGTGAACGAGGGTTGGCAATG 614
Query 600 ACTGTCTATAACAATGCAAGTCCTAGCTCCAGCAGTCGCACGTCAATGGAGCCCAAAGGA 659
||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
Sbjct 615 ACTGTTTATAACAATGCAAGTCCTAGCTCCAGCAGTCGCTTGTCAATGGAGCCCGAAGAA 674
Query 660 GTACCACCAATGCTTCTAATCCCAGCTGATCCTATAAAAGATGAAAAGGACTCTGAGGCC 719
|||||||||||| ||||| | |||||| ||||||| || | | |||| ||||| |||
Sbjct 675 GTACCACCAATGGTTCTATTGCCAGCTCATCCTATGGAA-ACG--AAGGTTTCTGAAGCC 731
Query 720 GA-TGCACTTATTATCCTCAATGATGAGCCCAATATAGATCATAAGTCTGTGATTT---- 774
| ||||||| |||||||||||||||| |||||||| ||||||||| |||||||||
Sbjct 732 -AGTGCACTTGTTATCCTCAATGATGAACCCAATATCGATCATAAGCCTGTGATTTCAGA 790
Query 775 T--AGGAAACTGTTCAGCTCCCATGCTTGAGATCGAGAAATCAAATATACATGTGGAAGA 832
| |||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 791 TACAGGAAACTGTTCAGCTCCCATGCTTGAGATGGGGAAATCAAATATACATGTGCAAGA 850
Query 833 ACGGGATAGGGAAACCAAAGATAATCTCAATGATACTATTGCCATGGATGTGTCT-C--C 889
| ||||| ||||||||||||||| |||||||||||||| |||||||||||||||| | |
Sbjct 851 ATGGGATTGGGAAACCAAAGATATTCTCAATGATACTACTGCCATGGATGTGTCTCCTTC 910
Query 890 TTCAGCTATTGGGGAATCTAGTGAGCATAAGGTTGCCGCTGCTTCAGTTGAATTAGCTTC 949
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 911 TTCAGCTATTGGGGAATCAAGTGAGCATAAGGTTGCTGCTGCTTCAGTTGAATTAGCTTC 970
Query 950 TTCGACTTCTGGTGAGGCAAAGATTTATCTAAGTTTTGCGCCTGCAACTGGAGAAACAAC 1009
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 971 TTCGACTTCTGGTGAGGCAAAGATTTGTCTAAGTTTCGCGCCTGCAACTGGAGAAACAAC 1030
Query 1010 GAATTTGTGTTTGCCTTCTATGGAGGATCTTCGGAGAGCAATGGAGGAGAAGTGTCTCAA 1069
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1031 GAATTTGCATTTGCCTTCTATGGAGGATCTTCGGAGAGCAATGGAGGAGAAGTGCCTCAA 1090
Query 1070 GTCGTACAAAATTGTTCATCCCAAGTTTTCGGTCCTTGGGTTCATGAAGGACATGTGTAG 1129
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1091 GTCGTACAAAATTGTTCACCCCGAGTTTTCGGTCCTTGGGTTCATGAAGGACATGTGTAG 1150
Query 1130 CTGTTACATAGACTTGGCAAAGAATTCAACCAGGCAGTCACTTGAAACAGAAACCATATG 1189
||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||
Sbjct 1151 CTGTTACATAGACTTGGCAAAGAATTCAACCAGCCAGTTGCTTGAAACAGAAACCGTATG 1210
Query 1190 TGACATAAGTAAGGCGGGTGATGAAAGTGGTGCAGCTGGCATTTCGATGGGGTTGGTGGT 1249
|||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1211 TGACATGAGTAAGGCGGGTGATGAAAGTGGTGCAGTTGGCATTTCGATGCCGTTGGTGGT 1270
Query 1250 TGTTCCTGAATGCGAGATCTCTGAAGGTGGCTTGAGAGCAATTAGCAACATGAAGGACAT 1309
||||||||||||||||||||| | || ||||| || ||||||||||||||||||||||||
Sbjct 1271 TGTTCCTGAATGCGAGATCTCGGGAGATGGCTGGAAAGCAATTAGCAACATGAAGGACAT 1330
Query 1310 TACGGCTGGTGAAGAAAACATTGAGATTCCATGGGTGAATGAGATCAACGACAAGGTTCC 1369
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1331 TACGGCTGGTGAAGAAAACGTTGAGATTCCATGGGTGAATGAGATCAACGAGAAGGTTCC 1390
Query 1370 TTCATGTTTCCGTTACATGCCTCATAGCTTTGTATTTCAAGATGCTCCAGTGAAATTCTC 1429
||| ||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||
Sbjct 1391 TTCCCGTTTCCGTTACATGCCTCACAGCTTTGTGTTTCAAGATGCTCCAGTGATATTCTC 1450
Query 1430 ACTCTCAAGTTTCTCTGATGAGCAAAGCTGCTCCTTTTCCTGTATCGAAGATTGCCTGGC 1489
||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 1451 GCTCTCAAGTTTCTCTGATGAGCAAAGCTGCTCCACTTCTTGTATCGAAGACTGCCTGGC 1510
Query 1490 TTCAGAAATGTCGTGCAATTGTGCAATTGCTTTTGATAACGTGTTTGCGTACTCAGTAAA 1549
||||||||||||||||||||||||||||| | ||||||||| |||||||||| || || |
Sbjct 1511 TTCAGAAATGTCGTGCAATTGTGCAATTGGTGTTGATAACGGGTTTGCGTACACATTAGA 1570
Query 1550 TGGCTTACTCAAAGAAGAATTCTTGGAAGCTCGGATCTCTGAGGCCCGCGATCAACGGAA 1609
||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1571 TGGGTTACTCAAAGAAGAATTCTTGGAAGCTCGGATCTCTGAGGCTCGTGATCAACGGAA 1630
Query 1610 ACAGGTGCTGCAATTCTGTGAAGAGTGCCCATTGGAGAGAGCTAAAAAGGTTGAGATTTT 1669
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1631 ACAGGTGCTGCGATTCTGTGAAGAGTGCCCATTGGAGAGAGCTAAAAAGGTTGAGATTTT 1690
Query 1670 GGAACCATGCAAAGGGCATCTGAAGAGGGGAGCCATTAAAGAGTGTTGGATCAAATGTGG 1729
||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1691 GGAACCATGTAAAGGGCATCTAAAGAGGGGAGCCATTAAAGAGTGTTGGTTCAAATGTGG 1750
Query 1730 TTGCACTAAGAGATGCGGTAACCGAGTGATACAAAGAGGAATACAAAACAAATTACAGGT 1789
|||||||||||||||||||||||||||| | ||||||||||| || ||||||||||||||
Sbjct 1751 TTGCACTAAGAGATGCGGTAACCGAGTGGTGCAAAGAGGAATGCACAACAAATTACAGGT 1810
Query 1790 GTTTTTCACGCCAAATGGGAAAGGCTGGGGCCTTAGGACGTTGGAGAAACTGCCTAAAGG 1849
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 1811 GTTTTTCACGCCAAATGGGAAAGGCTGGGGACTTAGGACTTTAGAGAAACTGCCTAAAGG 1870
Query 1850 GGCATTTATTTGTGAGTACATTGGAGAGATATTGACAATTCCGGAGTTATACCAACGTAG 1909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1871 GGCATTTATTTGTGAGTACATTGGAGAGATATTGACAATTCCGGAGTTATACCAACGTAG 1930
Query 1910 CTTTGAAGGTAAACTCACTT-GTCCTTTTATATTGGATGCACATTGGGGTTCTGAAGAGA 1968
|||||||| ||||| ||||| | ||| | ||||||||||||||||||||||||||||| |
Sbjct 1931 CTTTGAAGATAAACCCACTTTG-CCTGTGATATTGGATGCACATTGGGGTTCTGAAGAAA 1989
Query 1969 GGTTAGAGGATGACAAAGCTCTGTGTCTTGATGGGACGCATTATGGAAATATATCAGGGT 2028
||||||||| |||||||||||||||||||||||||| | |||||||||||| ||| |||
Sbjct 1990 GGTTAGAGGGTGACAAAGCTCTGTGTCTTGATGGGATGTTTTATGGAAATATCTCAAGGT 2049
Query 2029 TCCTTAACCACAGATGTCTTGATGCAAACTTGATCGAGATCCCAGTTCAAGTCGAGACTC 2088
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2050 TCCTTAACCACAGATGTCTTGATGCAAACTTGATCGAGATTCCAGTTCAAGTCGAGACTC 2109
Query 2089 CGGATCAGCATTATTATCATCTTGCATTCTTCACAACAAGGGACATCGAGGCAATGGAGG 2148
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2110 CGGATCAGCATTATTATCATCTTGCATTCTTCACAACAAGAGACATCGAGGCAATGGAGG 2169
Query 2149 AACTCACATGGGATTATGGCGTTGACTTCAACGATGATGAATCTCTGATGAAACCCTTTG 2208
||||| |||||||||||||| |||||||||||||| |||| ||||| |||||||||||||
Sbjct 2170 AACTCGCATGGGATTATGGCATTGACTTCAACGATAATGACTCTCTAATGAAACCCTTTG 2229
Query 2209 ATTGTCTGTGTGGTAGCAGATTCTGCAGGAACAAGAAGCGATCAAAGAAGATCATGCAGA 2268
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 2230 ATTGTCTGTGTGGTAGCAGATTCTGCAGGAACAAGAAGCGATCAACGAAGACCATGCAGA 2289
Query 2269 TTATGAACAAAGCATGAGAGGAGAATGAAGAAGAAAAGA--T-ATGAGACCCTCCGTTTT 2325
|| |||||||||||||||||| | |||||||||||||| | ||||||||||| |||||
Sbjct 2290 TTTTGAACAAAGCATGAGAGGCTAGTGAAGAAGAAAAGACGTGATGAGACCCTCTGTTTT 2349
Query 2326 TTG-TGAATGGGACTCTCTTAATTAACAAACCGTTCCCGGTCAATTGATTTTGTAGGTTG 2384
||| |||||||||||||| ||||||| ||| ||| ||| ||||||||||||||
Sbjct 2350 TTGGTGAATGGGACTCTC--------CAAACCGGTCCGGGTTAATAGATTTTGTAGGTTG 2401
Query 2385 G-AAAACAAGATGCT-AAGTTGGTTATTGTGAGATCAAACTCTGTATAGCT 2433
| |||| |||| ||| ||||||| ||||||| |||||||||||||||||||
Sbjct 2402 GGAAAAAAAGAAGCTTAAGTTGGGTATTGTGTGATCAAACTCTGTATAGCT 2452
Score = 494 bits (267), Expect = 2e-138
Identities = 375/423 (89%), Gaps = 24/423 (6%)
Strand=Plus/Plus
Query 25 AGTTTTATGAGGTGGGTGAGTGATTTTAGCTTTGTCATTGCAGAAA-TTCGTCGAAAATG 83
|||||| |||||| ||||||||| || |||||||| |||||||||| || || |||||||
Sbjct 47 AGTTTTTTGAGGTTGGTGAGTGA-TTCAGCTTTGTTATTGCAGAAACTT-GTTGAAAATG 104
Query 84 GCACCGAATCCTAAGATTAAGAAAGCCTGTGACGCTATGAAGCTTTTAGGAATATCAGAG 143
|||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 105 GCACCGAATCTTAGGATTAAGAAAGCCTGTGACGCGATGAAGCTTTTAGGAATATCAGAG 164
Query 144 ACGAAAACAAGGGCCTTTCTCAGAAAACTTCTCAAGGCCTATGATAATAACTGGGATTTC 203
||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||
Sbjct 165 ACGAAAACAAGGGCCTTTCTCAGGAAACTTCTCAAGACCTATGAGAATAACTGGGATTTC 224
Query 204 ATTGAAGATGAAGCCTATAAGGTCCTTCTTGATGCAATCTTCGACGAGGCTGATGCCCAG 263
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 ATTGAAGAGGATGCTTATAAGGTCCTTCTTGATGCAATCTTCGACGAGGCTGATGCCCAG 284
Query 264 TCCACTGAAAAGA-T--GAAG-AA-AG-AA--GA-G--GAA--AAGA--A---G---TCC 302
||||||||||| | | |||| || || || || | ||| |||| | | |||
Sbjct 285 TCCACTGAAAAAAATAAGAAGGAAGAGGAAAAGAAGAAGAAGGAAGAGGAAAAGAAGTCC 344
Query 303 AAAAATGTAGCAACCAGCAGGGGAAGGAGGAAAGCTCCTGAGCCTTTGGTACAAGATGAG 362
| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 AGAAGTGTAGCAACGAGCAGGGGAAGGAGGAAAGCTCCTGAGCCTTTGGTACAAGATGAA 404
Query 363 GAGGACGATATGGATGAAGATGAAACTCCATTGAAAAGGAGGTTGCGTAGTAAACGCGGA 422
|||||||||||||||||||||||| ||||||||||||||||||||| |||| ||| |||
Sbjct 405 GAGGACGATATGGATGAAGATGAATTTCCATTGAAAAGGAGGTTGCGCAGTAGACGTGGA 464
Query 423 AGA 425
|||
Sbjct 465 AGA 467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128276873251
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5