BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470386
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04100.1 | Symbols: IAA10 | indoleacetic acid-induced protei... 1323 0.0
> AT1G04100.1 | Symbols: IAA10 | indoleacetic acid-induced protein
10 | chr1:1059506-1061191 FORWARD LENGTH=1254
Length=1254
Score = 1323 bits (716), Expect = 0.0
Identities = 898/983 (91%), Gaps = 23/983 (2%)
Strand=Plus/Plus
Query 224 GCAATTTGGGGTAATGAATGGTTTGCAAGATGTTTGTTCTTCAAGTGGGTCGGTGATGTT 283
|||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||| |
Sbjct 291 GCAATTTGGGATAATGAATGGTTTGCAAGAAGTTTGTTCGTCAAGTGGGTCGGTGATGAT 350
Query 284 CGGACTTCCAGCTGAAGAAGACGAAAACGCCGCACTTTCGTCGGAGGATTCTTCTCGCCC 343
|||||| |||||||||||||||||||||||||||| ||||||||||||||| ||| ||||
Sbjct 351 CGGACTACCAGCTGAAGAAGACGAAAACGCCGCACATTCGTCGGAGGATTCATCTTGCCC 410
Query 344 CGACGAGTCTGTGTCAGAGACAGAGCTCGACCTAGCTTTGGGTCTTAGCATTGGTCTCAA 403
||||||||| |||||||||||||||||||||||||||||||||||||||| | |
Sbjct 411 CGACGAGTCAGTGTCAGAGACAGAGCTCGACCTAGCTTTGGGTCTTAGCA----T-T--- 462
Query 404 AGGTCGTCGGAAGGTTCGAtcttctttgtcttcctcttcttcttcttctATGACCAGGGA 463
|||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||
Sbjct 463 -GGTCGTCGGAAGGTTCGATCGTCTTTGTCTTCCTCGTCTTCTTC-TC--TGACCAGGGA 518
Query 464 AAGTGGGACCAAACGCTCTGCTGATTCTTCTTCTGCGGCTGCCTCAAACGCAACGAGACA 523
||||||||||||||||||||||||||||||| | || || |||||||||||||| |||||
Sbjct 519 AAGTGGGACCAAACGCTCTGCTGATTCTTCTCCGGCTGCCGCCTCAAACGCAACCAGACA 578
Query 524 AGTTGCAGTCGGTTGGCCGCCTCTACGGACTTACAGAATCAACAGTTTGGTCAATCAAGC 583
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 AGTTGCTGTAGGTTGGCCGCCTCTACGGACTTACAGAATCAACAGTTTGGTCAATCAAGC 638
Query 584 AAAGTCATTAGCTACTGAAGGCGGCTTGAGTTCTGACATTCAAAAGGACACAATAAAAAA 643
|||||| |||||||| ||||||||||||||||||| |||||||||||| || | |||||
Sbjct 639 AAAGTCTTTAGCTACGGAAGGCGGCTTGAGTTCTGGCATTCAAAAGGAGACTACAAAAAG 698
Query 644 CGGCGTGGTGGCTGCGAAAAACGATGATGTTTGCTTTATCAAATC-TACCAGGACTTCTA 702
| ||||| ||||| || |||||||||| ||||||||||||||| | ||||||||||||
Sbjct 699 TGTAGTGGTTGCTGCTAAGAACGATGATGCTTGCTTTATCAAATCGT-CCAGGACTTCTA 757
Query 703 TGCTTGTGAAGGTGACAATGGACGGAGTTATAATTGGAAGGAAGGTTGATCTCAATGCTC 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 TGCTTGTGAAGGTGACAATGGACGGAGTTATAATTGGAAGGAAGGTTGATCTCAATGCTC 817
Query 763 TTGATTCTTATGCAGCCTTGGAGAAAACTTTGGAACAAATGTTTTTCCAGATTCCTTCTC 822
| ||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||
Sbjct 818 TGGATTCTTATGCAGCCTTAGAGAAAACTTTGGATCTAATGTTTTTCCAGATTCCTTCTC 877
Query 823 CTGTTACAAAATCAAACACACAAGGATGCAAGACAATCAAGGAAACACGTGCTTCGGTAT 882
|||| |||| ||| ||||||||||||| ||||||||| ||||||||| || ||||| ||
Sbjct 878 CTGTAACAAGATCCAACACACAAGGATACAAGACAATTAAGGAAACATGTACTTCGAAAT 937
Query 883 TGCTGGATGGCTCATCGGAATATATCATAACATATCAAGATAAAGACGGAGATTGGATGC 942
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 TACTGGATGGCTCATCGGAATATATCATAACATATCAAGATAAAGACGGAGATTGGATGC 997
Query 943 TTGTAGGAGATGTTCCTTGGCAGATGTTCCTTGGGTCCGTGAAAAGACTGAGAATCATGA 1002
||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct 998 TTGTAGGAGATGTTCCTTGGCAGATGTTCCTCGGGTCTGTGACAAGACTGAGAATCATGA 1057
Query 1003 AG-CATTCAAATGAAACTGGACTAGGTAAGTAGAGATTCCTATATAGCAAAAAACATTTT 1061
|| ||| ||| || | ||||| |||||||||||||| |||||||||||||||| || |||
Sbjct 1058 AGACAT-CAATTGGAGCTGGAGTAGGTAAGTAGAGAGTCCTATATAGCAAAAA-CAGTTT 1115
Query 1062 ACATCTCTTTGGTTTGTAACTCATATATCACGTTCACATGTAAACATGTGCATATGTTTT 1121
||||||||||||| ||||||||||||||||| ||||||| || ||||||||||||||||
Sbjct 1116 ACATCTCTTTGGTCTGTAACTCATATATCACATTCACATATATACATGTGCATATGTTT- 1174
Query 1122 TATACACGAGTGTACATATGTCTTGTGGTCGTTTGTGTATATTAAACAACAGCTTAACCT 1181
||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1175 -ATACATGAGTGTACATATGTCTTGTGGTCGTTTGTGAATATCAAACAACAGCTTAACCT 1233
Query 1182 CCTGT-TTTAA-GATCTTTGTAT 1202
||| ||||| |||||||||||
Sbjct 1234 --TGTCTTTAAAGATCTTTGTAT 1254
Score = 217 bits (117), Expect = 2e-55
Identities = 207/246 (84%), Gaps = 23/246 (9%)
Strand=Plus/Plus
Query 1 TCTCTCTCTCTTTAAGAAAAGTTCCTTCTTTTTGATCCGTGAATCGAAGTCACCCTAGAA 60
|||||||||||||||||||| |||||| ||||||||||| ||||||||||| |||| |||
Sbjct 13 TCTCTCTCTCTTTAAGAAAAATTCCTTGTTTTTGATCCGAGAATCGAAGTCGCCCTCGAA 72
Query 61 TCAAGATTAAAACCTCGTTTAGTTCCCAATTTC-G----GT---TC--TG--TG---T-- 103
||||||||||||||||||||||||| ||||||| | || || || || |
Sbjct 73 TCAAGATTAAAACCTCGTTTAGTTCTCAATTTCAGTTCTGTGGATCCGTGCGTGACCTCA 132
Query 104 -GttttttttttGCT-CTGTCTCGAAATTCAGAATCCTAGAGGTGTTGAAAGTTGAAAAC 161
||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 133 AGTTTTTTTTTTTTTTCTGTCTCGAAATTCAGAATCGTAGAGGTGTTGAAAGTTGAAACC 192
Query 162 TTTTCT--GGTTCGTTTGGGTTA-TGGGTTAATTCAAACTTGATCGATGATTGGATTTGA 218
|||| | |||| | |||| ||| |||||| |||||||||||||||| |||||||||||
Sbjct 193 TTTTTTTTGGTTTGCTTGG-TTAATGGGTTTCTTCAAACTTGATCGATAATTGGATTTGA 251
Query 219 ATCAAG 224
||||||
Sbjct 252 ATCAAG 257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59035840920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5