BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470386 Length=1202 Score E Sequences producing significant alignments: (Bits) Value AT1G04100.1 | Symbols: IAA10 | indoleacetic acid-induced protei... 1323 0.0 > AT1G04100.1 | Symbols: IAA10 | indoleacetic acid-induced protein 10 | chr1:1059506-1061191 FORWARD LENGTH=1254 Length=1254 Score = 1323 bits (716), Expect = 0.0 Identities = 898/983 (91%), Gaps = 23/983 (2%) Strand=Plus/Plus Query 224 GCAATTTGGGGTAATGAATGGTTTGCAAGATGTTTGTTCTTCAAGTGGGTCGGTGATGTT 283 |||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||| | Sbjct 291 GCAATTTGGGATAATGAATGGTTTGCAAGAAGTTTGTTCGTCAAGTGGGTCGGTGATGAT 350 Query 284 CGGACTTCCAGCTGAAGAAGACGAAAACGCCGCACTTTCGTCGGAGGATTCTTCTCGCCC 343 |||||| |||||||||||||||||||||||||||| ||||||||||||||| ||| |||| Sbjct 351 CGGACTACCAGCTGAAGAAGACGAAAACGCCGCACATTCGTCGGAGGATTCATCTTGCCC 410 Query 344 CGACGAGTCTGTGTCAGAGACAGAGCTCGACCTAGCTTTGGGTCTTAGCATTGGTCTCAA 403 ||||||||| |||||||||||||||||||||||||||||||||||||||| | | Sbjct 411 CGACGAGTCAGTGTCAGAGACAGAGCTCGACCTAGCTTTGGGTCTTAGCA----T-T--- 462 Query 404 AGGTCGTCGGAAGGTTCGAtcttctttgtcttcctcttcttcttcttctATGACCAGGGA 463 |||||||||||||||||||| |||||||||||||| |||||||| || |||||||||| Sbjct 463 -GGTCGTCGGAAGGTTCGATCGTCTTTGTCTTCCTCGTCTTCTTC-TC--TGACCAGGGA 518 Query 464 AAGTGGGACCAAACGCTCTGCTGATTCTTCTTCTGCGGCTGCCTCAAACGCAACGAGACA 523 ||||||||||||||||||||||||||||||| | || || |||||||||||||| ||||| Sbjct 519 AAGTGGGACCAAACGCTCTGCTGATTCTTCTCCGGCTGCCGCCTCAAACGCAACCAGACA 578 Query 524 AGTTGCAGTCGGTTGGCCGCCTCTACGGACTTACAGAATCAACAGTTTGGTCAATCAAGC 583 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 579 AGTTGCTGTAGGTTGGCCGCCTCTACGGACTTACAGAATCAACAGTTTGGTCAATCAAGC 638 Query 584 AAAGTCATTAGCTACTGAAGGCGGCTTGAGTTCTGACATTCAAAAGGACACAATAAAAAA 643 |||||| |||||||| ||||||||||||||||||| |||||||||||| || | ||||| Sbjct 639 AAAGTCTTTAGCTACGGAAGGCGGCTTGAGTTCTGGCATTCAAAAGGAGACTACAAAAAG 698 Query 644 CGGCGTGGTGGCTGCGAAAAACGATGATGTTTGCTTTATCAAATC-TACCAGGACTTCTA 702 | ||||| ||||| || |||||||||| ||||||||||||||| | |||||||||||| Sbjct 699 TGTAGTGGTTGCTGCTAAGAACGATGATGCTTGCTTTATCAAATCGT-CCAGGACTTCTA 757 Query 703 TGCTTGTGAAGGTGACAATGGACGGAGTTATAATTGGAAGGAAGGTTGATCTCAATGCTC 762 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 758 TGCTTGTGAAGGTGACAATGGACGGAGTTATAATTGGAAGGAAGGTTGATCTCAATGCTC 817 Query 763 TTGATTCTTATGCAGCCTTGGAGAAAACTTTGGAACAAATGTTTTTCCAGATTCCTTCTC 822 | ||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| Sbjct 818 TGGATTCTTATGCAGCCTTAGAGAAAACTTTGGATCTAATGTTTTTCCAGATTCCTTCTC 877 Query 823 CTGTTACAAAATCAAACACACAAGGATGCAAGACAATCAAGGAAACACGTGCTTCGGTAT 882 |||| |||| ||| ||||||||||||| ||||||||| ||||||||| || ||||| || Sbjct 878 CTGTAACAAGATCCAACACACAAGGATACAAGACAATTAAGGAAACATGTACTTCGAAAT 937 Query 883 TGCTGGATGGCTCATCGGAATATATCATAACATATCAAGATAAAGACGGAGATTGGATGC 942 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 938 TACTGGATGGCTCATCGGAATATATCATAACATATCAAGATAAAGACGGAGATTGGATGC 997 Query 943 TTGTAGGAGATGTTCCTTGGCAGATGTTCCTTGGGTCCGTGAAAAGACTGAGAATCATGA 1002 ||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| Sbjct 998 TTGTAGGAGATGTTCCTTGGCAGATGTTCCTCGGGTCTGTGACAAGACTGAGAATCATGA 1057 Query 1003 AG-CATTCAAATGAAACTGGACTAGGTAAGTAGAGATTCCTATATAGCAAAAAACATTTT 1061 || ||| ||| || | ||||| |||||||||||||| |||||||||||||||| || ||| Sbjct 1058 AGACAT-CAATTGGAGCTGGAGTAGGTAAGTAGAGAGTCCTATATAGCAAAAA-CAGTTT 1115 Query 1062 ACATCTCTTTGGTTTGTAACTCATATATCACGTTCACATGTAAACATGTGCATATGTTTT 1121 ||||||||||||| ||||||||||||||||| ||||||| || |||||||||||||||| Sbjct 1116 ACATCTCTTTGGTCTGTAACTCATATATCACATTCACATATATACATGTGCATATGTTT- 1174 Query 1122 TATACACGAGTGTACATATGTCTTGTGGTCGTTTGTGTATATTAAACAACAGCTTAACCT 1181 ||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 1175 -ATACATGAGTGTACATATGTCTTGTGGTCGTTTGTGAATATCAAACAACAGCTTAACCT 1233 Query 1182 CCTGT-TTTAA-GATCTTTGTAT 1202 ||| ||||| ||||||||||| Sbjct 1234 --TGTCTTTAAAGATCTTTGTAT 1254 Score = 217 bits (117), Expect = 2e-55 Identities = 207/246 (84%), Gaps = 23/246 (9%) Strand=Plus/Plus Query 1 TCTCTCTCTCTTTAAGAAAAGTTCCTTCTTTTTGATCCGTGAATCGAAGTCACCCTAGAA 60 |||||||||||||||||||| |||||| ||||||||||| ||||||||||| |||| ||| Sbjct 13 TCTCTCTCTCTTTAAGAAAAATTCCTTGTTTTTGATCCGAGAATCGAAGTCGCCCTCGAA 72 Query 61 TCAAGATTAAAACCTCGTTTAGTTCCCAATTTC-G----GT---TC--TG--TG---T-- 103 ||||||||||||||||||||||||| ||||||| | || || || || | Sbjct 73 TCAAGATTAAAACCTCGTTTAGTTCTCAATTTCAGTTCTGTGGATCCGTGCGTGACCTCA 132 Query 104 -GttttttttttGCT-CTGTCTCGAAATTCAGAATCCTAGAGGTGTTGAAAGTTGAAAAC 161 ||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| | Sbjct 133 AGTTTTTTTTTTTTTTCTGTCTCGAAATTCAGAATCGTAGAGGTGTTGAAAGTTGAAACC 192 Query 162 TTTTCT--GGTTCGTTTGGGTTA-TGGGTTAATTCAAACTTGATCGATGATTGGATTTGA 218 |||| | |||| | |||| ||| |||||| |||||||||||||||| ||||||||||| Sbjct 193 TTTTTTTTGGTTTGCTTGG-TTAATGGGTTTCTTCAAACTTGATCGATAATTGGATTTGA 251 Query 219 ATCAAG 224 |||||| Sbjct 252 ATCAAG 257 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59035840920 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5