BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470387
Length=2337
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04110.1 | Symbols: SDD1 | Subtilase family protein | chr1:1... 3842 0.0
> AT1G04110.1 | Symbols: SDD1 | Subtilase family protein | chr1:1061457-1063784
REVERSE LENGTH=2328
Length=2328
Score = 3842 bits (2080), Expect = 0.0
Identities = 2259/2343 (96%), Gaps = 21/2343 (1%)
Strand=Plus/Plus
Query 1 ATGGAACCCAAATCC-TTCCTACTCTGCATTAtctttcttctcttctcttcttcttcttc 59
|||||||||||| || ||| | |||||||||| |||| || | || | || || |||
Sbjct 1 ATGGAACCCAAA-CCTTTCTTTCTCTGCATTA----TCTT-TC-T-TC-TATT-TTGTTC 50
Query 60 ttcttcCTCAGAAATCCTGCAGAAACAGACTTACATTGTTCAGCTTCATCCTAATACCGA 119
|||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 51 TTCTTCGTCAGAGATCCTGCAGAAGCAGACTTACATTGTTCAGCTTCATCCTAATAGCGA 110
Query 120 AACCGCTAAAACATTTGCCTCAAAGTTTGATTGGCATCTTTCTTTTCTCCAAGAAGCGGT 179
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 AACCGCTAAAACCTTTGCCTCAAAGTTTGATTGGCATCTTTCTTTTCTCCAAGAAGCGGT 170
Query 180 TTTGGGTGTTGAAGAAGAAGAGGAAGAGCCTTCTTCACGACTTCTCTACTCCTATGGCTC 239
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 171 TTTAGGTGTTGAAGAAGAAGAGGAAGAGCCTTCTTCTCGACTTCTCTACTCCTATGGCTC 230
Query 240 TGCGATTGAAGGATTTGCTGCTCAGTTGACTGAGTCAGAAGCCCAGATGCTGAGATATTC 299
||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct 231 TGCGATTGAAGGATTTGCTGCTCAGTTGACTGAATCAGAAGCCGAGATACTGAGATATTC 290
Query 300 ACCTGAAGTTGTTGCAGTGAGACCTGACCATGTTCTTCAAGTTCAAACCACTTACTCTTA 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 291 ACCTGAAGTTGTTGCAGTGAGACCTGACCATGTTCTTCAGGTTCAAACCACTTACTCTTA 350
Query 360 CAAGTTCTTGGGACTCGACGGTTTTGGAAACT-CGAGTGTATGGTCTAAATCTCGGTTTG 418
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 351 CAAGTTCTTGGGACTCGACGGTTTTGGAAACTCCG-GTGTATGGTCTAAATCTCGGTTTG 409
Query 419 GTCAAGGCACAATTATCGGCGTGCTTGATACTGGAGTTTGGCCTGAAAGTCCTAGCTTTG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 GTCAAGGCACAATTATCGGCGTGCTTGATACTGGAGTTTGGCCTGAAAGTCCTAGCTTTG 469
Query 479 ACGATACCGGAATGCCTTCGATTCCACGGAAATGGAAAGGGATTTGCCAAGAAGGAGAGA 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 470 ACGATACCGGAATGCCTTCGATTCCACGGAAATGGAAAGGGATTTGCCAAGAAGGAGA-A 528
Query 539 A-TTTCAGTTCCTCGAGCTGTAACCGGAAGCTAATCGGTGCTAGATTCTTCATCAGAGGA 597
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 AGTTTCAGTTCTTCGAGCTGTAACCGGAAGCTAATCGGTGCTAGATTCTTCATCAGAGGA 588
Query 598 CACCGTGTCGCTAATTCACCAGAGGAATCACCAAACATGCCCCGTGAATACATTTCCGCA 657
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 589 CACCGTGTCGCTAATTCACCAGAGGAATCACCAAACATGCCTCGTGAATACATTTCCGCA 648
Query 658 AGAGATTCAACGGGACACGGGACTCATACCGCTTCAACAGTTGGTGGATCCTCTGTTTCG 717
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 649 AGAGATTCAACGGGACACGGGACTCACACCGCCTCAACAGTTGGTGGATCCTCTGTTTCG 708
Query 718 ATGGCGAATGTTCTTGGCAATGGAGCTGGTGTGGCTCGTGGGATGGCTCCTGGAGCTCAC 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 ATGGCGAATGTTCTTGGCAATGGAGCTGGTGTGGCTCGTGGGATGGCTCCTGGAGCTCAC 768
Query 778 ATTGCAGTCTATAAAGTCTGTTGGTTCAATGGTTGTTACAGCTCTGACATTCTAGCAGCT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 ATTGCAGTCTATAAAGTCTGTTGGTTCAATGGTTGTTACAGCTCTGACATTCTAGCAGCT 828
Query 838 ATAGATGTAGCGATTCAAGATAAAGTCGACGTTCTTTCTCTTTCCCTTGGCGGTTTCCCG 897
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 829 ATAGATGTAGCGATTCAAGATAAAGTCGATGTTCTTTCGCTTTCCCTTGGCGGTTTCCCT 888
Query 898 ATTCCTTTGTATGATGACACAATCGCCATTGGAACATTCCGAGCCATGGAACGTGGTATA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 889 ATTCCTTTGTATGATGACACAATCGCCATTGGAACATTCCGAGCCATGGAACGCGGTATA 948
Query 958 TCTGTAATATGTGCAGCTGGTAACAACGGTCCAATCGAAAGCTCTGTTGCAAACACAGCT 1017
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 TCTGTAATCTGTGCAGCTGGTAACAACGGTCCAATCGAAAGCTCTGTTGCAAACACAGCT 1008
Query 1018 CCTTGGGTCTCAACCATTGGCGCAGGCACGCTTGATCGAAGATTTCCCGCTGTGGTCCGA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1009 CCTTGGGTCTCAACCATTGGCGCAGGCACGCTTGATCGAAGATTTCCCGCTGTGGTCAGA 1068
Query 1078 TTAGCCAACGGAAAGCTTCTGTATGGAGAGTCGTTGTATCCCGGG-AAAGGTTTAAAGAA 1136
|||||||||||||||||||| ||||||||||| |||||| ||||| |||||| |||||||
Sbjct 1069 TTAGCCAACGGAAAGCTTCTCTATGGAGAGTCATTGTAT-CCGGGAAAAGGTATAAAGAA 1127
Query 1137 TGCTGAGAGAGAGGTTGAGGTGATTTACGTCACAGGAGGAGATAAAGGAAGTGAGTTCTG 1196
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TGCCGGGAGAGAGGTTGAGGTGATTTACGTCACAGGAGGAGATAAAGGAAGTGAGTTCTG 1187
Query 1197 TTTGAGAGGGTCACTTCCAAGAGAGGAAATCCGAGGCAAAATGGTTATTTGTGATCGCGG 1256
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1188 TTTGAGAGGGTCACTTCCAAGAGAAGAAATCCGAGGCAAAATGGTGATTTGTGATCGCGG 1247
Query 1257 CGTCAATGGAAGATCTGAGAAAGGAGAAGCGATTAAAGAAGCAGGAGGAGTTGCAATGAT 1316
|||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1248 AGTCAATGGAAGATCGGAGAAAGGAGAAGCGGTTAAAGAAGCTGGAGGAGTTGCAATGAT 1307
Query 1317 CTTAGCCAACACAGAGATCAACCAAGAAGAAGATTCTATTGACGTTCATCTCTTACCAGC 1376
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 CTTAGCCAATACAGAGATCAACCAAGAAGAAGATTCTATTGACGTTCATCTCTTACCAGC 1367
Query 1377 TACATTGATTGGTTACACCGAGTCAGTCCTTCTGAAAGCTTATGTTAATGCCACGGTGAA 1436
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1368 TACATTGATTGGTTACACTGAGTCAGTCCTTCTGAAGGCTTATGTTAATGCCACGGTGAA 1427
Query 1437 ACCAAAGGCGCGGATAATTTTTGGTGGTACAGTGATTGGGCGGTCACGAGCACCGGAAGT 1496
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||
Sbjct 1428 ACCAAAGGCGCGGATAATTTTTGGTGGTACGGTGATTGGGAGGTCACGAGCACCGGAGGT 1487
Query 1497 GGCTCAGTTTTCAGCTCGAGGACCGAGTTTAGCCAATCCTTCGATACTAAAACCGGATAT 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 GGCTCAGTTTTCAGCTCGAGGACCGAGTTTAGCCAATCCTTCGATACTAAAACCGGATAT 1547
Query 1557 GATTGCTCCGGGAGTCAATATCATTGCGGCTTGGCCTCAAAATCTAGGACCAACCGGACT 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 GATTGCTCCGGGAGTCAATATCATTGCGGCTTGGCCTCAAAATCTAGGACCAACCGGACT 1607
Query 1617 TCCTTATGATTCAAGAAGAGTTAACTTCACTGTAATGTCAGGAACTTCAATGTCTTGTCC 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 TCCTTATGATTCAAGAAGAGTTAACTTCACTGTAATGTCAGGAACTTCAATGTCTTGTCC 1667
Query 1677 ACATGTTAGCGGAATCACTGCTCTTATCCGGTCTGCATACCCGAACTGGTCTCCCGCTGC 1736
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1668 ACATGTTAGCGGAATCACTGCTCTTATCCGGTCTGCATACCCGAACTGGTCTCCAGCTGC 1727
Query 1737 AATCAAATCCGCATTGATGACAACAGCGGATTTGTATGATCGTCAAGGGAAAGCGATAAA 1796
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1728 AATCAAATCCGCATTGATGACAACAGCGGATTTGTACGATCGTCAAGGGAAAGCGATAAA 1787
Query 1797 GGATGGTAACAAACCAGCAGGTGTGTTTGCGATTGGAGCAGGGCATGTGAATCCGCAAAA 1856
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1788 GGATGGTAACAAACCAGCCGGTGTGTTTGCGATTGGAGCAGGGCATGTGAATCCGCAAAA 1847
Query 1857 GGCGATAAACCCGGGATTGGTTTACAACATTCAACCAGTGGATTACATTACTTACCTCTG 1916
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1848 GGCGATAAACCCGGGATTGGTTTACAACATTCAACCAGTGGATTACATAACTTACCTCTG 1907
Query 1917 CACTCTTGGATTCACAAGATCAGACATTTTAGCAATCACTCATAAGAACGTGAGCTGCAG 1976
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1908 CACTCTTGGATTCACAAGATCAGATATTTTAGCAATCACTCATAAGAACGTGAGCTGCAA 1967
Query 1977 CGGAATATTGCGGAAAAACCCGGGTTTTAGCCTCAATTACCCGTCGATATCCGTGATTTT 2036
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1968 TGGAATATTGCGGAAAAACCCGGGTTTTAGTCTCAATTACCCGTCGATAGCCGTGATTTT 2027
Query 2037 CAAACGTGGCAAGACTACAGAGATGATCACAAGGCGTGTGACTAACGTTGGGAGTCCAAA 2096
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2028 CAAACGTGGCAAGACTACGGAGATGATCACAAGGCGTGTCACTAACGTTGGGAGTCCTAA 2087
Query 2097 CTCGATATACTCAGTGAATGTTGAGGCTCCAGAAGGGATCAAAGTGATTGTAAATCCTAA 2156
||||||||||||||||||||| |||||||||| ||||||||||| ||||| ||||||||
Sbjct 2088 CTCGATATACTCAGTGAATGTCAAGGCTCCAGAGGGGATCAAAGTTATTGTCAATCCTAA 2147
Query 2157 GAGACTTGTATTCAAACACGTGGATCAGACGCTGAGCTATCGAGTATGGTTTGTATTGAA 2216
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2148 GAGACTTGTGTTCAAACACGTGGATCAGACGCTGAGCTATAGAGTATGGTTTGTATTGAA 2207
Query 2217 GAAGAAAAACAGAGGAGGGAGGGTGGCTA-CGTTTGCACA-GGGACAGTTGACTTGGGTC 2274
|||||||||||||||||||| |||||||| | |||||||| ||| |||||||||||||||
Sbjct 2208 GAAGAAAAACAGAGGAGGGAAGGTGGCTAGC-TTTGCACAAGGG-CAGTTGACTTGGGTC 2265
Query 2275 AACTCTCAGAATCTGATGCAGCGAGTTAGAAGTCCAATCTCTGTAACCTTGAAGACTAAC 2334
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2266 AACTCTCATAATCTGATGCAGCGAGTTAGAAGTCCAATCTCTGTAACCTTGAAGACTAAC 2325
Query 2335 TGA 2337
|||
Sbjct 2326 TGA 2328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116013459495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5