BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470389 Length=1304 Score E Sequences producing significant alignments: (Bits) Value AT1G04130.1 | Symbols: TPR2, AtTPR2 | Tetratricopeptide repeat ... 1842 0.0 > AT1G04130.1 | Symbols: TPR2, AtTPR2 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1073427-1075568 FORWARD LENGTH=1315 Length=1315 Score = 1842 bits (997), Expect = 0.0 Identities = 1102/1153 (96%), Gaps = 6/1153 (1%) Strand=Plus/Plus Query 2 TTTGCTTTCTATCTTTCTGCTGCGAATCAATGGCGCTATGGATGGACGCTGGAGCGACGC 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10 TTTGCTTTCTATCTTTCTGCTGCGAATCAATGGCGCTATGGATGGACGCTGGAGCGACGC 69 Query 62 CTACAACGGAGAACGAAAAGGCTGATCTTGAAGCTATTTCTGCTCTCAAAGAATCCGCCG 121 | || |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 70 CGACCACGGAGAAGGAAAAGGCTGATCTTGAAGCTATTTCTGCTCTCAAAGAATCCACCG 129 Query 122 CCATCGAATTCAAAGAACAGGGCAATGACTGTGTAAGGAAAGGGAAAAAGCATTACTCCG 181 ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | Sbjct 130 CCATCGAATTCAAAGAAGAGGGCAATGAATGTGTAAGGAAAGGGAAAAAGCATTACTCTG 189 Query 182 AGGCGATTGATTGTTACACGAAAGCCATTAATCAGGGAGTTCTAAGTGACTCAGAGACCT 241 |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 190 AGGCGATTGATTGTTACACGAAAGCCATTAGTCAGGGAGTTCTAAGTGATTCAGAGACCT 249 Query 242 CAATTTTGTTCTCGAATCGATCCCATGTTAATCTACTCTTAGGCAACTATCGGCGTGCCC 301 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 250 CTATTTTGTTCTCGAATCGATCCCATGTTAATCTACTCTTAGGCAACTATCGGCGTGCCC 309 Query 302 TCGCGGATGCTGAGGAATCAATGAGGTTATGTCCTCATAACGTTAAGGCGGTGTATCGAG 361 || | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 310 TCACCGATGCTGAGGAATCAATGAGGTTATCTCCTCATAACGTTAAGGCGGTGTATCGAG 369 Query 362 CTGCAAAGGCATCAATGTCATTGGATTTGCTGAACGAAGCAAAGTCTTATTGTGAAAAGG 421 |||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 370 CTGCTAAGGCATCCATGTCATTGGATTTGCTGAACGAGGCAAAGTCTTATTGTGAAAAGG 429 Query 422 GAATCGAGAATGATCCAAGTAATGAGGACATGAAGAAGCTTTTGAAACTGGTGAATTCAA 481 |||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| Sbjct 430 GAATCGAGAATGATCCGAGTAATGAGGACATGAAGAAGCTTTTAAAACTTGTGAATTCAA 489 Query 482 AGAAGCAAGAAAAAGAACAACACGAGGCTCAAGTCTCA-AGGGCTGTGGTTGAAGCCAAG 540 |||||||||| ||||||||||| |||||||||| |||| | ||| ||||| ||||||||| Sbjct 490 AGAAGCAAGAGAAAGAACAACATGAGGCTCAAGCCTCACA-GGCGGTGGTGGAAGCCAAG 548 Query 541 GCTTGTCTCTCTGCGATCGAGAACAGAGGAGTGAAGATTGGCAAAGCAATGTACCGAGAA 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 549 GCTTGTCTCTCTGCGATCGAGAACAGAGGAGTGAAGATTGGCAAAGCAATGTACCGAGAA 608 Query 601 CTCACGGGTTTGAAGAAGCCAATGTTAGATAAAAACAACATCCTTCATTGGCCTGTCCTG 660 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 609 CTCACTGGTTTGAAGAAGCCAATGTTAGATAAAAACAACATCCTTCATTGGCCTGTCCTG 668 Query 661 CTTCTTTACGCTGAGGCCATGACAAGTGACTTTGTCGAGGACTTTTGTGAAACAGACATG 720 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 669 CTTCTTTACGCTGAGGCCATGACAAGTGACTTTGTTGAGGACTTTTGTGAAACAGACATG 728 Query 721 TTTGCAACTCATCTTGATATGATGTTTTTAGAGGACAGCCCGCCGCTGCCATGGGATATA 780 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 729 TTTGCAACTCATCTTGATATGATGTTTTCAGAGGACAGCCCGCCGCTGCCATGGGATAAA 788 Query 781 AACAACGAATACTCGCGGGATGTTATTGAGCTTTACTATGAGGCGAGTTCAGGAACTCCA 840 |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| Sbjct 789 AACAACGAATACTCACGTGATGTTATTGAGCTTTACTACGAGGCGAGTTCAGGAACTCCA 848 Query 841 TTGCCTAGGAGTAGAGTTCTCCAGTATCTTCTAGAAGGTACAAAAGGTTCTCAAGCTGAA 900 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 849 TTGCCTAGGAGTAGAGTTCTCCAGTATCTTTTAGAAGGTACAAAAGGTTCTCAAGCTGAA 908 Query 901 ACTACCGGTGAAGAGGACACAAGTGTAACCAAAACACCCTCCTACATGAAAGGTTCTTCG 960 |||||||| |||||||||||||| | ||||||||||||||||||| |||||||||||||| Sbjct 909 ACTACCGGAGAAGAGGACACAAGCGCAACCAAAACACCCTCCTACCTGAAAGGTTCTTCG 968 Query 961 GGTATGGTTAAAGTGAACGAGAGAAGAACATTGCATGACGTGTTGAAAGAACCTAAGTTT 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 969 GGTATGGTTAAAGTGAACGAGAGAAGAACATTGCATGACGTGTTGAAAGAACCTAAGTTT 1028 Query 1021 GTCATCCCTGAGATTCCAGTCTTCTACATCGTATCAAAGAGGTCTAAATTCTACAAGGAC 1080 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 1029 GTCATCCCTGAGATTCCAGTCTTTTACATCGTATCAAAGAGGTCCAAATTCTACAAGGAC 1088 Query 1081 TTTATCGCTGGAAAATGGAGTCCACCAAATTAGAGAATTGAGTTCTAAAGAGAAT-GCTT 1139 |||| |||||||||||||| ||||||||| || ||||||||||| ||||||||| | || Sbjct 1089 TTTACCGCTGGAAAATGGACTCCACCAAACTAAAGAATTGAGTTAGAAAGAGAATAG-TT 1147 Query 1140 -ACTGATAGTTTT 1151 | ||||| |||| Sbjct 1148 GA-TGATAATTTT 1159 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64156296510 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5