BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470389
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04130.1 | Symbols: TPR2, AtTPR2 | Tetratricopeptide repeat ... 1842 0.0
> AT1G04130.1 | Symbols: TPR2, AtTPR2 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr1:1073427-1075568 FORWARD
LENGTH=1315
Length=1315
Score = 1842 bits (997), Expect = 0.0
Identities = 1102/1153 (96%), Gaps = 6/1153 (1%)
Strand=Plus/Plus
Query 2 TTTGCTTTCTATCTTTCTGCTGCGAATCAATGGCGCTATGGATGGACGCTGGAGCGACGC 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 TTTGCTTTCTATCTTTCTGCTGCGAATCAATGGCGCTATGGATGGACGCTGGAGCGACGC 69
Query 62 CTACAACGGAGAACGAAAAGGCTGATCTTGAAGCTATTTCTGCTCTCAAAGAATCCGCCG 121
| || |||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 70 CGACCACGGAGAAGGAAAAGGCTGATCTTGAAGCTATTTCTGCTCTCAAAGAATCCACCG 129
Query 122 CCATCGAATTCAAAGAACAGGGCAATGACTGTGTAAGGAAAGGGAAAAAGCATTACTCCG 181
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
Sbjct 130 CCATCGAATTCAAAGAAGAGGGCAATGAATGTGTAAGGAAAGGGAAAAAGCATTACTCTG 189
Query 182 AGGCGATTGATTGTTACACGAAAGCCATTAATCAGGGAGTTCTAAGTGACTCAGAGACCT 241
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 190 AGGCGATTGATTGTTACACGAAAGCCATTAGTCAGGGAGTTCTAAGTGATTCAGAGACCT 249
Query 242 CAATTTTGTTCTCGAATCGATCCCATGTTAATCTACTCTTAGGCAACTATCGGCGTGCCC 301
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 CTATTTTGTTCTCGAATCGATCCCATGTTAATCTACTCTTAGGCAACTATCGGCGTGCCC 309
Query 302 TCGCGGATGCTGAGGAATCAATGAGGTTATGTCCTCATAACGTTAAGGCGGTGTATCGAG 361
|| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 310 TCACCGATGCTGAGGAATCAATGAGGTTATCTCCTCATAACGTTAAGGCGGTGTATCGAG 369
Query 362 CTGCAAAGGCATCAATGTCATTGGATTTGCTGAACGAAGCAAAGTCTTATTGTGAAAAGG 421
|||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 370 CTGCTAAGGCATCCATGTCATTGGATTTGCTGAACGAGGCAAAGTCTTATTGTGAAAAGG 429
Query 422 GAATCGAGAATGATCCAAGTAATGAGGACATGAAGAAGCTTTTGAAACTGGTGAATTCAA 481
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 430 GAATCGAGAATGATCCGAGTAATGAGGACATGAAGAAGCTTTTAAAACTTGTGAATTCAA 489
Query 482 AGAAGCAAGAAAAAGAACAACACGAGGCTCAAGTCTCA-AGGGCTGTGGTTGAAGCCAAG 540
|||||||||| ||||||||||| |||||||||| |||| | ||| ||||| |||||||||
Sbjct 490 AGAAGCAAGAGAAAGAACAACATGAGGCTCAAGCCTCACA-GGCGGTGGTGGAAGCCAAG 548
Query 541 GCTTGTCTCTCTGCGATCGAGAACAGAGGAGTGAAGATTGGCAAAGCAATGTACCGAGAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 GCTTGTCTCTCTGCGATCGAGAACAGAGGAGTGAAGATTGGCAAAGCAATGTACCGAGAA 608
Query 601 CTCACGGGTTTGAAGAAGCCAATGTTAGATAAAAACAACATCCTTCATTGGCCTGTCCTG 660
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 CTCACTGGTTTGAAGAAGCCAATGTTAGATAAAAACAACATCCTTCATTGGCCTGTCCTG 668
Query 661 CTTCTTTACGCTGAGGCCATGACAAGTGACTTTGTCGAGGACTTTTGTGAAACAGACATG 720
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 669 CTTCTTTACGCTGAGGCCATGACAAGTGACTTTGTTGAGGACTTTTGTGAAACAGACATG 728
Query 721 TTTGCAACTCATCTTGATATGATGTTTTTAGAGGACAGCCCGCCGCTGCCATGGGATATA 780
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 729 TTTGCAACTCATCTTGATATGATGTTTTCAGAGGACAGCCCGCCGCTGCCATGGGATAAA 788
Query 781 AACAACGAATACTCGCGGGATGTTATTGAGCTTTACTATGAGGCGAGTTCAGGAACTCCA 840
|||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 789 AACAACGAATACTCACGTGATGTTATTGAGCTTTACTACGAGGCGAGTTCAGGAACTCCA 848
Query 841 TTGCCTAGGAGTAGAGTTCTCCAGTATCTTCTAGAAGGTACAAAAGGTTCTCAAGCTGAA 900
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 849 TTGCCTAGGAGTAGAGTTCTCCAGTATCTTTTAGAAGGTACAAAAGGTTCTCAAGCTGAA 908
Query 901 ACTACCGGTGAAGAGGACACAAGTGTAACCAAAACACCCTCCTACATGAAAGGTTCTTCG 960
|||||||| |||||||||||||| | ||||||||||||||||||| ||||||||||||||
Sbjct 909 ACTACCGGAGAAGAGGACACAAGCGCAACCAAAACACCCTCCTACCTGAAAGGTTCTTCG 968
Query 961 GGTATGGTTAAAGTGAACGAGAGAAGAACATTGCATGACGTGTTGAAAGAACCTAAGTTT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 GGTATGGTTAAAGTGAACGAGAGAAGAACATTGCATGACGTGTTGAAAGAACCTAAGTTT 1028
Query 1021 GTCATCCCTGAGATTCCAGTCTTCTACATCGTATCAAAGAGGTCTAAATTCTACAAGGAC 1080
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1029 GTCATCCCTGAGATTCCAGTCTTTTACATCGTATCAAAGAGGTCCAAATTCTACAAGGAC 1088
Query 1081 TTTATCGCTGGAAAATGGAGTCCACCAAATTAGAGAATTGAGTTCTAAAGAGAAT-GCTT 1139
|||| |||||||||||||| ||||||||| || ||||||||||| ||||||||| | ||
Sbjct 1089 TTTACCGCTGGAAAATGGACTCCACCAAACTAAAGAATTGAGTTAGAAAGAGAATAG-TT 1147
Query 1140 -ACTGATAGTTTT 1151
| ||||| ||||
Sbjct 1148 GA-TGATAATTTT 1159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64156296510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5