BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470396
Length=2535
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04200.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 3812 0.0
> AT1G04200.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED
IN: cellular_component unknown; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Dymeclin (InterPro:IPR019142); Has 395 Blast hits
to 389 proteins in 117 species: Archae - 0; Bacteria - 0;
Metazoa - 262; Fungi - 21; Plants - 68; Viruses - 0; Other
Eukaryotes - 44 (source: NCBI BLink). | chr1:1109482-1114107
FORWARD LENGTH=2625
Length=2625
Score = 3812 bits (2064), Expect = 0.0
Identities = 2335/2466 (95%), Gaps = 17/2466 (1%)
Strand=Plus/Plus
Query 1 TTTATCAGTTTGAATCTTCAATTTAATCTCAGATTTAGATC--------CAAAATTCAGA 52
|||| |||||||||||||||| ||||||||||||||||||| | ||||| |||
Sbjct 3 TTTAACAGTTTGAATCTTCAA-TTAATCTCAGATTTAGATCGAGAGAGACCAAATTGAGA 61
Query 53 GCAAGATCTTTGCATTGTTCATCTCTTACTTTGTAATGCTGTTGTTCTTTATCGGAACCA 112
||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||||
Sbjct 62 GCAAGATCTTTGCATTGTTCATCTCTTGCTTTGTAATGCCGTTGTTCTTCATCGTAACCG 121
Query 113 ACTCGGTGGACGCGATCGATTGACTCGTTCTCTTTTTGGATCCTTGTTGACTCGGCGAGC 172
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 122 ACTCGGTGGACGCGATCAATTGACTCGTTCTC-TTTTGGATCCTTGTTGACTCGGCGAGC 180
Query 173 TTGGCTTAGGAGACATGGGAGGTGTGCCTTCAACGCCGCGAAACACCGGTGGTGATGATG 232
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 TTGGCTTAGGAGACATGGGAGGTGTGCCTTCAACGCCGCGAAAAACCGGTGGTGATGATG 240
Query 233 TTTCGGTGGCGGAGTACCTCATTGCTACTTTTGTTGGGGAGAAATCGTTTCCTTTGGCCT 292
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 241 TTTCGGTGGCCGAGTACCTCATTGCCACTTTTGTTGGGGAGAAATCGTTTCCTTTAGCGT 300
Query 293 CTGATTTCTGGAACAAGCTCCTTGAGCTTCCGTTGAGTTCTCGGTGGCCTAGTGATCGTG 352
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 301 CTGATTTCTGGAACAAGCTACTTGAGCTTCCGTTGAGTTCTCGCTGGCCTAGTGATCGGG 360
Query 353 TTCAACAAGCCTGTGAACTTTTTGAACAAAGCAATGGCTACACTAGGCACCTTGCAAAAC 412
|||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||
Sbjct 361 TTCAACAAGCCTGTGAACTTTTCGCACAAAGTAATGGCTACACTAGGCACCTTGCAAAAC 420
Query 413 TATTGATTCATCTATCTTGGTGTTTGCAAGAGCTTCTTCAAGCTTCTGATGATCAGTCTT 472
||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 421 TATTGATTCATCTGTCCTGGTGTTTGCAAGAGCTTCTTCAAGCTTCAGATGATCAGTCTT 480
Query 473 CTATCTATAAGAAAGCTGTTAACGCTACATATATTTCTTCCGTGTTTTTGAAGTATTTGA 532
|| ||||||||||||||||||| || ||||||||||| ||||| ||||| ||||||||||
Sbjct 481 CTCTCTATAAGAAAGCTGTTAATGCAACATATATTTCATCCGTCTTTTTAAAGTATTTGA 540
Query 533 TTGAGAATGGAAAAATTGACAGTCTCCAGGAGTTACATCTCTCTCTGGACGAAAGTGAAC 592
||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||
Sbjct 541 TTGAGAATGGAAAAAGTGACAGTCTTCAGGAGTTGCATCTTTCTCTGGACGAAAGTGAAC 600
Query 593 CAGTCCCACATGGCTTTGTAATGGATCAAGACATCCAGAATTTTGTCATGCATAGTGTGC 652
|||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 601 CAGTTCCACATGGATTTGTAATGGATCAAGACATCCAAAATTTTGTCATGCATAGTGTTC 660
Query 653 TGAGCTTCATTGGATCAAATGAAGTGAGTCCCAATTCGTATGTTCTACACCGGGAACTTC 712
|||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||
Sbjct 661 TGAGCTTCATTGGATCAAATGAAGTGAGTCCCAACTCGTATGTTCTACATCAGGAACTTC 720
Query 713 TGAACTTCATGCTTGTTACAATGTCGACACAGCTTCT-TGCCGGACCATCACCTGGACCA 771
| ||||||||||||||||||||||||||||||||||| | | ||||| |||| |||||||
Sbjct 721 TCAACTTCATGCTTGTTACAATGTCGACACAGCTTCTCT-CTGGACCTTCACATGGACCA 779
Query 772 AGAGATGCGAACCCTTTTATTGATGCAGCAATGGCTCAGGAAAAGTCTATAGTTTGTCTC 831
| ||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||
Sbjct 780 ACAGATGCGAACCCTTTTATTGATGCAGCAATGACTCAGGAAAAGTCTCTAGTTTCTCTA 839
Query 832 GTAGTCAGAAGATTGCTACTTAATTATATTTCCCGACACCGTACTCCTCCAAATGCAATT 891
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTAGTCAGAAGGTTGCTACTTAATTATATTTCCCGACACCGTACTCCTCCAAATGCAAAA 899
Query 892 TCCTATATGTATTCTGATGGAGATTCACAAGGCATTTTGGGA-AGAGTTGGTTCTGCAGC 950
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 900 TCCTATATGTATTCTGATGGAGATTCACAAGGCATTTT-AGAGAGAGTTGGTTCTGCAGC 958
Query 951 TGCGAGTTTTGTGCTCTTGCCTTTGAACTATCTTGTAAGTAACAGTGGCGGATCTAACAA 1010
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 959 TGCAAGTTTAGTGCTCTTGCCTTTGAACTATCTTGTAAGTAACAGTGGCGGATCTAAAAA 1018
Query 1011 TCCACTAGCAGAGTGCAGCCTTCATGTTTTACTTATCCTAATTAACTATCACAAGTCTAT 1070
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TCCACTAGCGGAGTGCAGCCTGCATGTTTTACTTATCCTAATTAACTATCACAAGTCTAT 1078
Query 1071 CATGAGTGATGAGTCTATGACGGATAAAAGTGATGACAGTGCTACTTCGGAATCAGTTTC 1130
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 1079 CATGAGTGATGAGTCTATGACGGATAAAAGTGATGACAGTGCGACCTCAGAATCAGTTTC 1138
Query 1131 TAAAGTCCATGTATTTTCCTCTGGCAATACTTTTAGCAAGGCTCTAGCAAATGCTAGAGA 1190
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1139 TAAAGTCCATGTATTTTCCTCTGACAATACTTTTAGCAAGGCTCTAGCAAATGCTAGAGA 1198
Query 1191 TGTTGAATTTGACCGCTCAGATGTGGAGGGAAATGTCCACCCTGCTGGTCCACATGTTCG 1250
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1199 TGTTGAATTTGACCGCTCAGATGTGGAGGGAAATGCCCACCCTGCTGGTCCACATGTTCG 1258
Query 1251 GATACCATTTGCTTCACTATTTGATACTCTCGGCATGTGTTTAGCTGATGAGGGCGCTGT 1310
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1259 GATACCATTTGCTTCACTATTTGATACTCTCGGCATGTTTTTAGCTGATGAGGGCGCCGT 1318
Query 1311 CTTGCTCCTCTACTCACTGTTGCAAGGGAATTCCGACTTTAAGGAGTATGTGTTGGTGCG 1370
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CTTGCTCCTCTACTCATTGTTGCAAGGGAATTCCGACTTTAAGGAGTATGTGTTGGTGCG 1378
Query 1371 AACTGATTTGGATACTTTGTTGATGCCCGTTCTGGAAACGCTATATAACGCTTCAAAGAG 1430
|||||||||||||||||||||||||||| | ||||| ||||| |||||||||||||||||
Sbjct 1379 AACTGATTTGGATACTTTGTTGATGCCCATCCTGGAGACGCTGTATAACGCTTCAAAGAG 1438
Query 1431 AACATCATCTAATCAAATATACATGATGCTAATTGTACTTCTCATACTTAGTCAGGATTC 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 AACATCATCTAATCAAATATACATGATGCTAATTGTACTTCTCATACTTAGTCAGGATTC 1498
Query 1491 ATCTTTCAATTCAAGCATTCACAAGATGATACTGCCTAGCGTGCCATGGTACAAGGAGCA 1550
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1499 ATCTTTCAATTCAAGCATTCACAAGATGATACTGCCAAGCGTGCCATGGTACAAGGAGCA 1558
Query 1551 TCTCCTTCATCAGACGTCTCTTGGTTCCATAATGGTCATTATTCTCATAAGAACAGTGCA 1610
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1559 TCTCCTTCATCAGACGTCTCTTGGTTCCTTAATGGTCATTATTCTCATAAGAACAGTGCA 1618
Query 1611 GCATAACCTTTCTAAACTTCGGGATGTGTATCTGCAGACTACTTGCCTTGCTACGTTGGC 1670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 GCATAACCTTTCTAAACTTCGGGATGTGTATCTGCAGACTACTTGCCTTGCTACGTTGGC 1678
Query 1671 TAACATGGCACCTCATGCCCATCATTTAAGTGCATATGCCTCACAGAGGCTTGTCAGCCT 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 TAACATGGCACCTCATGCCCATCATTTAAGTGCATATGCCTCACAGAGGCTTGTCAGCCT 1738
Query 1731 TTTCTACATGCTTTCTCGAAAGTATAACAAGTTATCGGAGTTGACAGGTGATAAGGTCCA 1790
||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||
Sbjct 1739 TTTCTACATGCTTTCTCGAAAGTATAACAAGTTATCGGACTTAACAGGTGATAAGCTCCA 1798
Query 1791 AAGCATCAAAATTAACTTGTCAGGAGAGGATCTTGGCGTTTCAGAAGATTTGGCAGCAGA 1850
||| |||||||| |||||||| ||||||||| ||||||||||||||||| ||||||||||
Sbjct 1799 AAGTATCAAAATAAACTTGTCCGGAGAGGATGTTGGCGTTTCAGAAGATCTGGCAGCAGA 1858
Query 1851 GTTGCAGATCTTTACTGATTTCCTGAGACTTGTCCTAGATATATTAAATGCAATTTTGAC 1910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 GTTGCAGATCTTTACTGATTTCCTGAGACTTGTCCTAGATATATTAAATGCAATTTTGAC 1918
Query 1911 ATACGCATTGCCGAGAAATCCCGAGATTGTCTATGCGATTATGCACCGACAAGAAGTGTT 1970
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1919 GTACGCATTGCCGAGAAATCCTGAGATTGTCTATGCGATTATGCACCGACAAGAAGTGTT 1978
Query 1971 CCAACCTTTCAAGAACCATCCACAGTTCCATGAGCTAGTGGAAAATATATACACAGTCTT 2030
||||||||||||||| ||||||| ||||||||| || |||||||||||||| ||||||||
Sbjct 1979 CCAACCTTTCAAGAATCATCCACGGTTCCATGAACTGGTGGAAAATATATATACAGTCTT 2038
Query 2031 AGATTTTTTCAATAGCCGCATGGACTCTCAAAGATCGGATCGAGAATGGTCAGTGCAGAA 2090
||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 2039 AGACTTTTTCAACAGCCGCATGGATTCTCAAAGATCAGATCGAGAATGGTCAGTGCAGAA 2098
Query 2091 AGTTCTTCAGTTCATCATCAACAATTGCCGGTCTTGGCGAGGTGAAGGCATGAAGATGTT 2150
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2099 AGTTCTTCAATTCATCATCAACAATTGCCGGTCTTGGCGAGGTGAAGGCATGAAGATGTT 2158
Query 2151 TACTCAACTTCACTTCTCATACGAGCAAGAAAGCCACCCAGAAGAGTTCTTTATTCCATA 2210
|||||| |||||||||||||| || ||||| |||||||| |||||||| |||||||||||
Sbjct 2159 TACTCAGCTTCACTTCTCATATGAACAAGAGAGCCACCCGGAAGAGTTTTTTATTCCATA 2218
Query 2211 TGTTTGGCAGCTAGCATTTTCCCGATGTGGATTCAGTTTTAATCCAGACGCCATCAACTT 2270
||||||||| ||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 2219 TGTTTGGCAACTAGCTTTTTCCCGATGTGGATTCGGTTTTAACCCAGACGCCATCAACTT 2278
Query 2271 ATTCCCAGTGCCACACCCAGCTggaaaagagatagaagacgaaagaggggaagaattgga 2330
|||||||||||||||||||| || |||||||||||||||||||||||| ||||||| ||
Sbjct 2279 ATTCCCAGTGCCACACCCAGTTGAAAAAGAGATAGAAGACGAAAGAGGAGAAGAATCAGA 2338
Query 2331 agggaaagagaaggtgcaagagttgaaagaacagagaaTCGTCTTCGATCCATAAGTATT 2390
|||||||| |||||| ||||||||||| |||||||||||||||||||| |||||| ||||
Sbjct 2339 AGGGAAAGCGAAGGTACAAGAGTTGAACGAACAGAGAATCGTCTTCGACCCATAAATATT 2398
Query 2391 TTTCGATATAGGAGAGCTTCGATGGGGGC-GTATGT--ATATATTTATACGGTTTAGGGT 2447
||||||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||||
Sbjct 2399 TTTCGATATAGGAGAGCTTGGATTGGGGCCGTATGTGTATATATTTATACGGTTTAGGGT 2458
Query 2448 TCAAAt 2453
||||||
Sbjct 2459 TCAAAT 2464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125818693044
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5