BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470398
Length=1619
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04220.1 | Symbols: KCS2 | 3-ketoacyl-CoA synthase 2 | chr1:... 2519 0.0
AT5G43760.1 | Symbols: KCS20 | 3-ketoacyl-CoA synthase 20 | chr... 1443 0.0
> AT1G04220.1 | Symbols: KCS2 | 3-ketoacyl-CoA synthase 2 | chr1:1119699-1122526
REVERSE LENGTH=1784
Length=1784
Score = 2519 bits (1364), Expect = 0.0
Identities = 1547/1634 (95%), Gaps = 17/1634 (1%)
Strand=Plus/Plus
Query 1 GTCTCGTTACCTTTGATTATCATTTAAAACCAAAAGA-CTACCATGAAGGAGAATCACAT 59
|||||| ||| |||||||||||||||||||||||| | |||||||||| |||||||||||
Sbjct 1 GTCTCGCTACTTTTGATTATCATTTAAAACCAAAAAACCTACCATGAATGAGAATCACAT 60
Query 60 TCAAAGTGATCACATGAACAACACCATTCACGTAACAAACAAAAAACTCCCAAACTTCCT 119
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 TCAAAGTGATCACATGAACAACACCATTCATGTAACAAACAAAAAACTCCCAAACTTCCT 120
Query 120 CTTATCGGTACGCCTTAAATACGTTAAACTCGGTTACCATTACCTAATCTCTAATGCCGT 179
|||||| ||||| || ||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 121 CTTATCCGTACGTCTCAAATATGTTAAACTTGGTTACCATTACCTAATCTCGAATGCCGT 180
Query 180 CTACatcctcatcct-ccc-t-gtcctcctcgccgcaacctcctcctccttcaatctctc 236
|||||| ||||| || ||| | | ||||||||||||||||||||||||||| | |||| |
Sbjct 181 CTACATTCTCATACTCCCCGTCGGCCTCCTCGCCGCAACCTCCTCCTCCTTTAGTCTCAC 240
Query 237 cgatctcacactctTATACAACCACCTTCTCAAATTCCACTTCCTCTCTTCCACTATATT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 241 CGATCTCACACTCTTATACAACCACCTTCTCAAATTCCACTTCCTCTCTTCCACTCTCTT 300
Query 297 CGCAGCCCTTCTTATCTTTCTAACCACCCTCTACTTCACAACTCGTCCTCGCAAG-ATAT 355
||| || ||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 301 CGCCGCTCTTCTTATCTTTCTAACCACCCTCTACTTCACAACTCGTCCTCGC-AGAATCT 359
Query 356 TCCTCCTCGATTTCGCTTGTTACAAACCCGACTCTTCTCTAATATGCACACGAGAAACGT 415
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTCTCCTCGATTTCGCTTGTTACAAACCCGACTCTTCTCTAATATGCACACGAGAAACGT 419
Query 416 TCATGGACCGGTCTCAACGTGTTGGTATCTTCACAGAAGACAACCTCGCTTTCCAACAAA 475
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 420 TCATGGACCGGTCTCAGCGTGTCGGTATCTTCACAGAAGACAACCTCGCTTTCCAACAAA 479
Query 476 AGATCCTCGAACGCTCCGGTCTTGGACAAAAAACTTACTTCCCGGAGGCTCTCTTACGTG 535
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 480 AGATCCTCGAACGTTCCGGTCTTGGACAAAAGACTTACTTCCCGGAGGCTCTCTTACGTG 539
Query 536 TCCCGCCGAATCCTTGTATGTCTGAAGCAAGGAAAGAAGCCGAGACGGTTATGTTTGGAG 595
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCCCGCCTAATCCTTGTATGTCTGAAGCAAGGAAAGAAGCCGAGACGGTTATGTTTGGAG 599
Query 596 CTATAGACGCAGTGCTTGAGAAAACAGGAGTGAAGCCTAAGGATATTGGGATACTTGTGG 655
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 600 CTATAGACGCAGTGCTTGAGAAAACCGGAGTGAATCCTAAGGATATTGGGATACTTGTCG 659
Query 656 TGAATTGTAGCTTGTTTAATCCGACGCCTTCCTTATCAGCTATGATCGTGAATAAATATA 715
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 660 TGAATTGTAGCTTGTTTAATCCGACGCCTTCGTTATCGGCTATGATCGTGAATAAATATA 719
Query 716 AGCTTAGAGGAAACATTTTGAGCTATAATCTTGGTGGGATGGGTTGTAGTGCTGGTCTTA 775
|||| ||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 720 AGCTCAGAGGAAACGTTTTGAGCTATAACCTTGGTGGAATGGGTTGTAGTGCTGGTCTTA 779
Query 776 TCTCCATTGATCTCGCTAAACAGCTTCTTCAGGTCCAACCAAATTCATATGCACTAGTAG 835
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 780 TCTCCATTGATCTCGCTAAACAGCTTCTTCAGGTTCAACCAAATTCATATGCACTAGTAG 839
Query 836 TGAGCACAGAAAACATAACCCTAAACTGGTATTTAGGCAACGACCGATCAATGCTTCTCT 895
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGAGCACAGAGAACATAACCCTAAACTGGTATTTAGGCAACGACCGATCAATGCTTCTCT 899
Query 896 CAAACTGTATCTTCAGAATGGGTGGCGCAGCCGTTCTCCTCTCTAACCGCTGCTCCGACC 955
||||||| |||||| ||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 900 CAAACTGCATCTTCCGAATGGGTGGCGCCGCCGTTCTCCTCTCTAACCGCTCCTCCGACC 959
Query 956 GCCGCCGCTCCAAATACCAACTCATCCACACCGTCCGTACCCACAAAGGAGCTGACGACA 1015
|| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 960 GCTGCCGCTCCAAATACCAACTCATCCACACCGTCCGTACACACAAAGGATCTGACGACA 1019
Query 1016 ACGCCTTTAACTGCGTTTACCAACGCGAAGACAGCGACGACAACAAACAAATCGGTGTCT 1075
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1020 ACGCCTTTAACTGCGTTTACCAACGCGAAGACAACGACGACAACAAACAAATCGGTGTCT 1079
Query 1076 CACTTTCCAAAAACCTAATGGCTATAGCCGGAGAAGCTCTCAAGACGAACATAACCACTC 1135
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1080 CACTTTCCAAAAACCTAATGGCTATAGCTGGAGAAGCTCTCAAGACGAACATAACCACTC 1139
Query 1136 TCGGACCGCTAGTCCTTCCAATGTCCGAACAACTTCTATTTTTCGCAACACTCGTGGCGC 1195
| ||||||||||| || |||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 1140 TGGGACCGCTAGTTCTACCAATGTCTGAACAACTTCTCTTTTTCGCAACACTAGTGGCGC 1199
Query 1196 GAAAAGTCTTTAATGTGAAGAAAATCAAACCTTATATTCCTGATTTCAAGCTAGCATTCG 1255
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1200 GAAAAGTCTTTAATGTGAAGAAAATAAAACCTTATATTCCTGATTTCAAGCTAGCTTTCG 1259
Query 1256 AGCACTTCTGCATCCACGCGGGAGGCAGAGCAGTGCTCGATGAGATTGAGAAGAATTTGG 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AGCACTTCTGCATCCACGCGGGAGGCAGAGCAGTGCTCGATGAGATTGAGAAGAATTTGG 1319
Query 1316 ATCTT-TCTGAGTGGCATATGGAGCCTTCTCGGATGACTTTGAACCGGTTTGGGAATACT 1374
|| || ||||||||||||||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 1320 AT-TTATCTGAGTGGCATATGGAACCTTCGAGGATGACTTTGAACCGGTTTGGAAATACT 1378
Query 1375 TCGAGTAGCTCGCTGTGGTATGAGCTTGCGTATAGTGAGGCTAAAGGAAGGATTAAGAGA 1434
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TCGAGTAGCTCGCTTTGGTATGAGCTTGCGTATAGTGAGGCTAAAGGAAGGATTAAGAGA 1438
Query 1435 GGAGATAGGACTTGGCAGATTGCTTTTGGGTCGGGTTTTAAGTGTAATAGTGCGGTTTGG 1494
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1439 GGAGATAGGACTTGGCAGATTGCTTTTGGATCCGGTTTTAAGTGTAATAGTGCGGTTTGG 1498
Query 1495 AGAGCTTTGAGAACTATTGATCCGTCCAAGGAGAAGA---------CTAATCCATGGATT 1545
||||||||||||||||| ||||||||||||||||||| ||||||| ||||||
Sbjct 1499 AGAGCTTTGAGAACTATCGATCCGTCCAAGGAGAAGAAGAAGAAGACTAATCCTTGGATT 1558
Query 1546 GATGAGATTCATGAGTTTCCGGTGCCCGTTCCCAGGATATCTCCGGTGACATCTTCGTCG 1605
|||||||||||||||||||| ||||| ||||| |||| |||||||||||||||||| |||
Sbjct 1559 GATGAGATTCATGAGTTTCCCGTGCCGGTTCCAAGGACATCTCCGGTGACATCTTCCTCG 1618
Query 1606 GAATCTCGATAGTT 1619
||||||||||||||
Sbjct 1619 GAATCTCGATAGTT 1632
> AT5G43760.1 | Symbols: KCS20 | 3-ketoacyl-CoA synthase 20 | chr5:17585763-17588597
FORWARD LENGTH=1841
Length=1841
Score = 1443 bits (781), Expect = 0.0
Identities = 1291/1534 (84%), Gaps = 48/1534 (3%)
Strand=Plus/Plus
Query 99 CAAA-AAACTCCCAAACTTCCTCTTATCGGTACGCCTTAAATACGTTAAACTCGGTTACC 157
|||| || ||||||||||| || ||||| || || || |||||||| |||||||||||||
Sbjct 214 CAAACAACCTCCCAAACTTTCTATTATCCGTCCGTCTCAAATACGTAAAACTCGGTTACC 273
Query 158 ATTACCTAATCTCTAATGC-CGTCTACatcctcatcctccctgtcctcctcgccgcaac- 215
| ||||||||||| || || | ||||||||||| |||| || | ||||||||||||||
Sbjct 274 ACTACCTAATCTCCAACGCTC-TCTACATCCTCCTCCTTCC--T-CTCCTCGCCGCAACA 329
Query 216 ctc-ct--cctc-cttcaatc-tc-tc--cgatctcacactctTATACAACCACCTTCTC 267
|| || |||| |||| || | || ||| ||| | ||| | ||||| || | |||
Sbjct 330 ATCGCTAACCTCTCTTCTTTCACCATCAACGACCTCTCTCTCCTCTACAA-CA-C-ACTC 386
Query 268 AAATTCCACTTCCTCTCTTCCACTATATTCG-CAGCC-C-TTCTT-ATCTTTCTAACCAC 323
||||| |||||||| |||| | ||| || || | |||| |||| ||| ||||
Sbjct 387 CGTTTCCATTTCCTCTCCGCCAC---ACTCGCCA-CCGCACTCTTAATCTCTCTCTCCAC 442
Query 324 C-CTCTACTTCACAACTCGTCCTCG-CAAGATATTCCTCCTCGATTTCGCTTGTTACAAA 381
| || |||||||| || ||||| || | | | ||||||||||| ||| | |||||||||
Sbjct 443 CGCT-TACTTCACCACCCGTCCCCGCCGTG-TCTTCCTCCTCGACTTCTCGTGTTACAAA 500
Query 382 CCCGACTCTTCTCTAATATGCACACGAGAAACGTTCATGGACCGGTCTCAACGTGTTGGT 441
|| ||| |||| || || ||||| || ||||| ||||||||| | ||||||||||| ||
Sbjct 501 CCAGACCCTTCACTGATCTGCACTCGTGAAACATTCATGGACAGATCTCAACGTGTAGGC 560
Query 442 ATCTTCACAGAAGACAACCTCGCTTTCCAACAAAAGATCCTCGAACGCTCCGGTCTTGGA 501
|||||||||||||||||| | |||||||||||||||||||||||| | |||||||| ||
Sbjct 561 ATCTTCACAGAAGACAACTTAGCTTTCCAACAAAAGATCCTCGAAAGATCCGGTCTAGGT 620
Query 502 CAAAAAACTTACTTCCCGGAGGCTC-TCTTACGTGTCCCGCCGAATCCTTGTATGTCTGA 560
|| |||||||||||||| || |||| |||| ||||| || || |||||||||||| ||
Sbjct 621 CAGAAAACTTACTTCCCTGAAGCTCTTCTT-CGTGTTCCTCCTAATCCTTGTATGGAAGA 679
Query 561 AGCAAGGAAAGAAGCCGAGACGGTTATGTTTGGAGCTATAGACGCAGTGCTTGAGAAAAC 620
||| || ||||| || || || |||||||| |||||||| ||||| || |||||||| ||
Sbjct 680 AGCGAGAAAAGAGGCAGAAACAGTTATGTTCGGAGCTATTGACGCGGTTCTTGAGAAGAC 739
Query 621 AGGAGTGAAGCCTAAGGATATTGGGATACTTGTGGTGAATTGTAGCTTGTTTAATCCGAC 680
|| ||||| ||||| |||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 740 CGGTGTGAAACCTAAAGATATTGGAATCCTTGTGGTGAATTGTAGCTTGTTTAATCCAAC 799
Query 681 GCCTTC-CTTATCAGCTATGATCGTGAATAAATATAAGCTTAGAGGAAACATTTTGAGCT 739
|| || ||| || |||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 800 ACCGTCACTT-TCTGCTATGATTGTGAATAAGTATAAGCTTAGAGGCAACATTTTGAGCT 858
Query 740 ATAATCTTGGTGGGATGGGTTGTAGTGCTGGTCTTATCTCCATTGATCTCGCTAAACAGC 799
||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 859 ATAATCTTGGTGGAATGGGATGTAGTGCTGGCCTTATCTCCATTGATCTCGCTAAACAGA 918
Query 800 TTCTTCAGGTCCAACCAAATTCATATGCACTAGTAGTGAGCACAGAAAACATAACCCTAA 859
| |||||||| |||||||| ||||| |||||||| ||||||||||| |||||||||||||
Sbjct 919 TGCTTCAGGTGCAACCAAACTCATACGCACTAGTGGTGAGCACAGAGAACATAACCCTAA 978
Query 860 ACTGGTATTTAGGCAACGACCGATCAATGCTTCTCTCAAACTGTATCTTCAGAATGGGTG 919
||||||| |||||||||||||||||||||||||| || |||||||||||| | ||||| |
Sbjct 979 ACTGGTACTTAGGCAACGACCGATCAATGCTTCTATCTAACTGTATCTTCCGTATGGGCG 1038
Query 920 GCGCAGCCGTTCTCCTCTCTAACCGCTGCTCCGACCGCCGCCGCTCCAAATACCAACTCA 979
| || || || || ||||| ||||||| ||| || ||| |||| || ||||| || ||||
Sbjct 1039 GAGCCGCGGTACTTCTCTCGAACCGCTCCTCTGATCGCAGCCGTTCAAAATATCAGCTCA 1098
Query 980 TCCACACCGTCCGTACCCACAAAGGAGCTGACGACAACGCCTTTAACTGCGTTTACCAAC 1039
|||| |||||||||||||||||||||||||| |||||||| ||| ||| ||||||||||
Sbjct 1099 TCCATACCGTCCGTACCCACAAAGGAGCTGATGACAACGCATTTGGCTGTGTTTACCAAC 1158
Query 1040 GCGAAGACAGCGACG-ACAACAAA----C-AAATCGGTGTCTCACTTTCCAAAAACCTAA 1093
| ||||||| | ||| | || ||| | ||||||| || || || || ||||||||||
Sbjct 1159 GAGAAGACAACAACGCAGAAGAAACCGGCAAAATCGGAGTGTCCCTCTCTAAAAACCTAA 1218
Query 1094 TGGCTATAGCCGGAGAAGCTCTCAAGACGAACATAACCACTCTCGGACCGCTAGTCCTTC 1153
|||| ||||| ||||||||||||||||| ||||| || ||||||||||| ||||| || |
Sbjct 1219 TGGCGATAGCTGGAGAAGCTCTCAAGACAAACATCACAACTCTCGGACCACTAGTTCTAC 1278
Query 1154 CAATGTCCGAACAACTTCTATTTTTCGCAACACTCGTGGCGCGAAAAGTCTTTAATGTGA 1213
||||||||||||||||||| |||||||| || || ||||| ||||||||||| || || |
Sbjct 1279 CAATGTCCGAACAACTTCTCTTTTTCGCGACTCTTGTGGCCCGAAAAGTCTTCAAAGTCA 1338
Query 1214 AGAAAATCAAA-CCTTATATTCCTGATTTCAAGCTAGCATTCGAGCACTTCTGCATCCAC 1272
||||||| ||| ||||| |||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 1339 AGAAAAT-AAAGCCTTACATTCCTGATTTCAAGCTAGCTTTCGAGCATTTCTGTATCCAC 1397
Query 1273 GCGGGAGGCAGAGCAGTGCTCGATGAGATTGAGAAGAATTTGGATCTT-TCTGAGTGGCA 1331
|||||||| ||||| |||||||| |||||||||||||| |||||| || || || |||||
Sbjct 1398 GCGGGAGGTAGAGCCGTGCTCGACGAGATTGAGAAGAACTTGGAT-TTATCCGAATGGCA 1456
Query 1332 TATGGAGCCTTCTCGGATGACTTTGAACCGGTTTGGGAATACTTCGAGTAGCTCGCTGTG 1391
|||||||| || ||||||| |||||||||||||| || |||||||||||||| || ||
Sbjct 1457 CATGGAGCCATCGAGGATGACGTTGAACCGGTTTGGTAACACTTCGAGTAGCTCACTTTG 1516
Query 1392 GTATGAGCTTGCGTATAGTGAGGCTAAAGGAAGGATTAAGAGAGGAGATAGGACTTGGCA 1451
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1517 GTATGAGCTTGCGTATAGTGAAGCTAAAGGAAGGATTAAGAGAGGAGATAGGACTTGGCA 1576
Query 1452 GATTGCTTTTGGGTCGGGTTTTAAGTGTAATAGTGCGGTTTGGAGAGCTTTGAGAACTAT 1511
|||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||| ||
Sbjct 1577 GATTGCTTTTGGATCGGGTTTTAAGTGTAATAGTGCAGTTTGGAAAGCTTTGAGAACGAT 1636
Query 1512 TGATCCG-TCCAAGGAGAAGACTAATCCATGGATTGATGAGATTCATGAGTTTCCGGTGC 1570
|||||| | | | ||||||||||||||||||||||||||||| |||| ||||| || |
Sbjct 1637 TGATCCAATGGACG-AGAAGACTAATCCATGGATTGATGAGATTGATGACTTTCCTGTTC 1695
Query 1571 CCGTTCCCAGGAT-ATCTCCGGTGACATCTTCGT 1603
||||| ||||| | |||| | ||||| ||||
Sbjct 1696 AAGTTCCTAGGATCA-CTCCCATTACATCGTCGT 1728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79969468185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5