BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470398 Length=1619 Score E Sequences producing significant alignments: (Bits) Value AT1G04220.1 | Symbols: KCS2 | 3-ketoacyl-CoA synthase 2 | chr1:... 2519 0.0 AT5G43760.1 | Symbols: KCS20 | 3-ketoacyl-CoA synthase 20 | chr... 1443 0.0 > AT1G04220.1 | Symbols: KCS2 | 3-ketoacyl-CoA synthase 2 | chr1:1119699-1122526 REVERSE LENGTH=1784 Length=1784 Score = 2519 bits (1364), Expect = 0.0 Identities = 1547/1634 (95%), Gaps = 17/1634 (1%) Strand=Plus/Plus Query 1 GTCTCGTTACCTTTGATTATCATTTAAAACCAAAAGA-CTACCATGAAGGAGAATCACAT 59 |||||| ||| |||||||||||||||||||||||| | |||||||||| ||||||||||| Sbjct 1 GTCTCGCTACTTTTGATTATCATTTAAAACCAAAAAACCTACCATGAATGAGAATCACAT 60 Query 60 TCAAAGTGATCACATGAACAACACCATTCACGTAACAAACAAAAAACTCCCAAACTTCCT 119 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 61 TCAAAGTGATCACATGAACAACACCATTCATGTAACAAACAAAAAACTCCCAAACTTCCT 120 Query 120 CTTATCGGTACGCCTTAAATACGTTAAACTCGGTTACCATTACCTAATCTCTAATGCCGT 179 |||||| ||||| || ||||| |||||||| |||||||||||||||||||| |||||||| Sbjct 121 CTTATCCGTACGTCTCAAATATGTTAAACTTGGTTACCATTACCTAATCTCGAATGCCGT 180 Query 180 CTACatcctcatcct-ccc-t-gtcctcctcgccgcaacctcctcctccttcaatctctc 236 |||||| ||||| || ||| | | ||||||||||||||||||||||||||| | |||| | Sbjct 181 CTACATTCTCATACTCCCCGTCGGCCTCCTCGCCGCAACCTCCTCCTCCTTTAGTCTCAC 240 Query 237 cgatctcacactctTATACAACCACCTTCTCAAATTCCACTTCCTCTCTTCCACTATATT 296 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 241 CGATCTCACACTCTTATACAACCACCTTCTCAAATTCCACTTCCTCTCTTCCACTCTCTT 300 Query 297 CGCAGCCCTTCTTATCTTTCTAACCACCCTCTACTTCACAACTCGTCCTCGCAAG-ATAT 355 ||| || ||||||||||||||||||||||||||||||||||||||||||||| || || | Sbjct 301 CGCCGCTCTTCTTATCTTTCTAACCACCCTCTACTTCACAACTCGTCCTCGC-AGAATCT 359 Query 356 TCCTCCTCGATTTCGCTTGTTACAAACCCGACTCTTCTCTAATATGCACACGAGAAACGT 415 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TTCTCCTCGATTTCGCTTGTTACAAACCCGACTCTTCTCTAATATGCACACGAGAAACGT 419 Query 416 TCATGGACCGGTCTCAACGTGTTGGTATCTTCACAGAAGACAACCTCGCTTTCCAACAAA 475 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 420 TCATGGACCGGTCTCAGCGTGTCGGTATCTTCACAGAAGACAACCTCGCTTTCCAACAAA 479 Query 476 AGATCCTCGAACGCTCCGGTCTTGGACAAAAAACTTACTTCCCGGAGGCTCTCTTACGTG 535 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 480 AGATCCTCGAACGTTCCGGTCTTGGACAAAAGACTTACTTCCCGGAGGCTCTCTTACGTG 539 Query 536 TCCCGCCGAATCCTTGTATGTCTGAAGCAAGGAAAGAAGCCGAGACGGTTATGTTTGGAG 595 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TCCCGCCTAATCCTTGTATGTCTGAAGCAAGGAAAGAAGCCGAGACGGTTATGTTTGGAG 599 Query 596 CTATAGACGCAGTGCTTGAGAAAACAGGAGTGAAGCCTAAGGATATTGGGATACTTGTGG 655 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | Sbjct 600 CTATAGACGCAGTGCTTGAGAAAACCGGAGTGAATCCTAAGGATATTGGGATACTTGTCG 659 Query 656 TGAATTGTAGCTTGTTTAATCCGACGCCTTCCTTATCAGCTATGATCGTGAATAAATATA 715 ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 660 TGAATTGTAGCTTGTTTAATCCGACGCCTTCGTTATCGGCTATGATCGTGAATAAATATA 719 Query 716 AGCTTAGAGGAAACATTTTGAGCTATAATCTTGGTGGGATGGGTTGTAGTGCTGGTCTTA 775 |||| ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 720 AGCTCAGAGGAAACGTTTTGAGCTATAACCTTGGTGGAATGGGTTGTAGTGCTGGTCTTA 779 Query 776 TCTCCATTGATCTCGCTAAACAGCTTCTTCAGGTCCAACCAAATTCATATGCACTAGTAG 835 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 780 TCTCCATTGATCTCGCTAAACAGCTTCTTCAGGTTCAACCAAATTCATATGCACTAGTAG 839 Query 836 TGAGCACAGAAAACATAACCCTAAACTGGTATTTAGGCAACGACCGATCAATGCTTCTCT 895 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 TGAGCACAGAGAACATAACCCTAAACTGGTATTTAGGCAACGACCGATCAATGCTTCTCT 899 Query 896 CAAACTGTATCTTCAGAATGGGTGGCGCAGCCGTTCTCCTCTCTAACCGCTGCTCCGACC 955 ||||||| |||||| ||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 900 CAAACTGCATCTTCCGAATGGGTGGCGCCGCCGTTCTCCTCTCTAACCGCTCCTCCGACC 959 Query 956 GCCGCCGCTCCAAATACCAACTCATCCACACCGTCCGTACCCACAAAGGAGCTGACGACA 1015 || ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 960 GCTGCCGCTCCAAATACCAACTCATCCACACCGTCCGTACACACAAAGGATCTGACGACA 1019 Query 1016 ACGCCTTTAACTGCGTTTACCAACGCGAAGACAGCGACGACAACAAACAAATCGGTGTCT 1075 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1020 ACGCCTTTAACTGCGTTTACCAACGCGAAGACAACGACGACAACAAACAAATCGGTGTCT 1079 Query 1076 CACTTTCCAAAAACCTAATGGCTATAGCCGGAGAAGCTCTCAAGACGAACATAACCACTC 1135 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1080 CACTTTCCAAAAACCTAATGGCTATAGCTGGAGAAGCTCTCAAGACGAACATAACCACTC 1139 Query 1136 TCGGACCGCTAGTCCTTCCAATGTCCGAACAACTTCTATTTTTCGCAACACTCGTGGCGC 1195 | ||||||||||| || |||||||| ||||||||||| |||||||||||||| ||||||| Sbjct 1140 TGGGACCGCTAGTTCTACCAATGTCTGAACAACTTCTCTTTTTCGCAACACTAGTGGCGC 1199 Query 1196 GAAAAGTCTTTAATGTGAAGAAAATCAAACCTTATATTCCTGATTTCAAGCTAGCATTCG 1255 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1200 GAAAAGTCTTTAATGTGAAGAAAATAAAACCTTATATTCCTGATTTCAAGCTAGCTTTCG 1259 Query 1256 AGCACTTCTGCATCCACGCGGGAGGCAGAGCAGTGCTCGATGAGATTGAGAAGAATTTGG 1315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260 AGCACTTCTGCATCCACGCGGGAGGCAGAGCAGTGCTCGATGAGATTGAGAAGAATTTGG 1319 Query 1316 ATCTT-TCTGAGTGGCATATGGAGCCTTCTCGGATGACTTTGAACCGGTTTGGGAATACT 1374 || || ||||||||||||||||| ||||| |||||||||||||||||||||| |||||| Sbjct 1320 AT-TTATCTGAGTGGCATATGGAACCTTCGAGGATGACTTTGAACCGGTTTGGAAATACT 1378 Query 1375 TCGAGTAGCTCGCTGTGGTATGAGCTTGCGTATAGTGAGGCTAAAGGAAGGATTAAGAGA 1434 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1379 TCGAGTAGCTCGCTTTGGTATGAGCTTGCGTATAGTGAGGCTAAAGGAAGGATTAAGAGA 1438 Query 1435 GGAGATAGGACTTGGCAGATTGCTTTTGGGTCGGGTTTTAAGTGTAATAGTGCGGTTTGG 1494 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 1439 GGAGATAGGACTTGGCAGATTGCTTTTGGATCCGGTTTTAAGTGTAATAGTGCGGTTTGG 1498 Query 1495 AGAGCTTTGAGAACTATTGATCCGTCCAAGGAGAAGA---------CTAATCCATGGATT 1545 ||||||||||||||||| ||||||||||||||||||| ||||||| |||||| Sbjct 1499 AGAGCTTTGAGAACTATCGATCCGTCCAAGGAGAAGAAGAAGAAGACTAATCCTTGGATT 1558 Query 1546 GATGAGATTCATGAGTTTCCGGTGCCCGTTCCCAGGATATCTCCGGTGACATCTTCGTCG 1605 |||||||||||||||||||| ||||| ||||| |||| |||||||||||||||||| ||| Sbjct 1559 GATGAGATTCATGAGTTTCCCGTGCCGGTTCCAAGGACATCTCCGGTGACATCTTCCTCG 1618 Query 1606 GAATCTCGATAGTT 1619 |||||||||||||| Sbjct 1619 GAATCTCGATAGTT 1632 > AT5G43760.1 | Symbols: KCS20 | 3-ketoacyl-CoA synthase 20 | chr5:17585763-17588597 FORWARD LENGTH=1841 Length=1841 Score = 1443 bits (781), Expect = 0.0 Identities = 1291/1534 (84%), Gaps = 48/1534 (3%) Strand=Plus/Plus Query 99 CAAA-AAACTCCCAAACTTCCTCTTATCGGTACGCCTTAAATACGTTAAACTCGGTTACC 157 |||| || ||||||||||| || ||||| || || || |||||||| ||||||||||||| Sbjct 214 CAAACAACCTCCCAAACTTTCTATTATCCGTCCGTCTCAAATACGTAAAACTCGGTTACC 273 Query 158 ATTACCTAATCTCTAATGC-CGTCTACatcctcatcctccctgtcctcctcgccgcaac- 215 | ||||||||||| || || | ||||||||||| |||| || | |||||||||||||| Sbjct 274 ACTACCTAATCTCCAACGCTC-TCTACATCCTCCTCCTTCC--T-CTCCTCGCCGCAACA 329 Query 216 ctc-ct--cctc-cttcaatc-tc-tc--cgatctcacactctTATACAACCACCTTCTC 267 || || |||| |||| || | || ||| ||| | ||| | ||||| || | ||| Sbjct 330 ATCGCTAACCTCTCTTCTTTCACCATCAACGACCTCTCTCTCCTCTACAA-CA-C-ACTC 386 Query 268 AAATTCCACTTCCTCTCTTCCACTATATTCG-CAGCC-C-TTCTT-ATCTTTCTAACCAC 323 ||||| |||||||| |||| | ||| || || | |||| |||| ||| |||| Sbjct 387 CGTTTCCATTTCCTCTCCGCCAC---ACTCGCCA-CCGCACTCTTAATCTCTCTCTCCAC 442 Query 324 C-CTCTACTTCACAACTCGTCCTCG-CAAGATATTCCTCCTCGATTTCGCTTGTTACAAA 381 | || |||||||| || ||||| || | | | ||||||||||| ||| | ||||||||| Sbjct 443 CGCT-TACTTCACCACCCGTCCCCGCCGTG-TCTTCCTCCTCGACTTCTCGTGTTACAAA 500 Query 382 CCCGACTCTTCTCTAATATGCACACGAGAAACGTTCATGGACCGGTCTCAACGTGTTGGT 441 || ||| |||| || || ||||| || ||||| ||||||||| | ||||||||||| || Sbjct 501 CCAGACCCTTCACTGATCTGCACTCGTGAAACATTCATGGACAGATCTCAACGTGTAGGC 560 Query 442 ATCTTCACAGAAGACAACCTCGCTTTCCAACAAAAGATCCTCGAACGCTCCGGTCTTGGA 501 |||||||||||||||||| | |||||||||||||||||||||||| | |||||||| || Sbjct 561 ATCTTCACAGAAGACAACTTAGCTTTCCAACAAAAGATCCTCGAAAGATCCGGTCTAGGT 620 Query 502 CAAAAAACTTACTTCCCGGAGGCTC-TCTTACGTGTCCCGCCGAATCCTTGTATGTCTGA 560 || |||||||||||||| || |||| |||| ||||| || || |||||||||||| || Sbjct 621 CAGAAAACTTACTTCCCTGAAGCTCTTCTT-CGTGTTCCTCCTAATCCTTGTATGGAAGA 679 Query 561 AGCAAGGAAAGAAGCCGAGACGGTTATGTTTGGAGCTATAGACGCAGTGCTTGAGAAAAC 620 ||| || ||||| || || || |||||||| |||||||| ||||| || |||||||| || Sbjct 680 AGCGAGAAAAGAGGCAGAAACAGTTATGTTCGGAGCTATTGACGCGGTTCTTGAGAAGAC 739 Query 621 AGGAGTGAAGCCTAAGGATATTGGGATACTTGTGGTGAATTGTAGCTTGTTTAATCCGAC 680 || ||||| ||||| |||||||| || ||||||||||||||||||||||||||||| || Sbjct 740 CGGTGTGAAACCTAAAGATATTGGAATCCTTGTGGTGAATTGTAGCTTGTTTAATCCAAC 799 Query 681 GCCTTC-CTTATCAGCTATGATCGTGAATAAATATAAGCTTAGAGGAAACATTTTGAGCT 739 || || ||| || |||||||| |||||||| |||||||||||||| ||||||||||||| Sbjct 800 ACCGTCACTT-TCTGCTATGATTGTGAATAAGTATAAGCTTAGAGGCAACATTTTGAGCT 858 Query 740 ATAATCTTGGTGGGATGGGTTGTAGTGCTGGTCTTATCTCCATTGATCTCGCTAAACAGC 799 ||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 859 ATAATCTTGGTGGAATGGGATGTAGTGCTGGCCTTATCTCCATTGATCTCGCTAAACAGA 918 Query 800 TTCTTCAGGTCCAACCAAATTCATATGCACTAGTAGTGAGCACAGAAAACATAACCCTAA 859 | |||||||| |||||||| ||||| |||||||| ||||||||||| ||||||||||||| Sbjct 919 TGCTTCAGGTGCAACCAAACTCATACGCACTAGTGGTGAGCACAGAGAACATAACCCTAA 978 Query 860 ACTGGTATTTAGGCAACGACCGATCAATGCTTCTCTCAAACTGTATCTTCAGAATGGGTG 919 ||||||| |||||||||||||||||||||||||| || |||||||||||| | ||||| | Sbjct 979 ACTGGTACTTAGGCAACGACCGATCAATGCTTCTATCTAACTGTATCTTCCGTATGGGCG 1038 Query 920 GCGCAGCCGTTCTCCTCTCTAACCGCTGCTCCGACCGCCGCCGCTCCAAATACCAACTCA 979 | || || || || ||||| ||||||| ||| || ||| |||| || ||||| || |||| Sbjct 1039 GAGCCGCGGTACTTCTCTCGAACCGCTCCTCTGATCGCAGCCGTTCAAAATATCAGCTCA 1098 Query 980 TCCACACCGTCCGTACCCACAAAGGAGCTGACGACAACGCCTTTAACTGCGTTTACCAAC 1039 |||| |||||||||||||||||||||||||| |||||||| ||| ||| |||||||||| Sbjct 1099 TCCATACCGTCCGTACCCACAAAGGAGCTGATGACAACGCATTTGGCTGTGTTTACCAAC 1158 Query 1040 GCGAAGACAGCGACG-ACAACAAA----C-AAATCGGTGTCTCACTTTCCAAAAACCTAA 1093 | ||||||| | ||| | || ||| | ||||||| || || || || |||||||||| Sbjct 1159 GAGAAGACAACAACGCAGAAGAAACCGGCAAAATCGGAGTGTCCCTCTCTAAAAACCTAA 1218 Query 1094 TGGCTATAGCCGGAGAAGCTCTCAAGACGAACATAACCACTCTCGGACCGCTAGTCCTTC 1153 |||| ||||| ||||||||||||||||| ||||| || ||||||||||| ||||| || | Sbjct 1219 TGGCGATAGCTGGAGAAGCTCTCAAGACAAACATCACAACTCTCGGACCACTAGTTCTAC 1278 Query 1154 CAATGTCCGAACAACTTCTATTTTTCGCAACACTCGTGGCGCGAAAAGTCTTTAATGTGA 1213 ||||||||||||||||||| |||||||| || || ||||| ||||||||||| || || | Sbjct 1279 CAATGTCCGAACAACTTCTCTTTTTCGCGACTCTTGTGGCCCGAAAAGTCTTCAAAGTCA 1338 Query 1214 AGAAAATCAAA-CCTTATATTCCTGATTTCAAGCTAGCATTCGAGCACTTCTGCATCCAC 1272 ||||||| ||| ||||| |||||||||||||||||||| |||||||| ||||| |||||| Sbjct 1339 AGAAAAT-AAAGCCTTACATTCCTGATTTCAAGCTAGCTTTCGAGCATTTCTGTATCCAC 1397 Query 1273 GCGGGAGGCAGAGCAGTGCTCGATGAGATTGAGAAGAATTTGGATCTT-TCTGAGTGGCA 1331 |||||||| ||||| |||||||| |||||||||||||| |||||| || || || ||||| Sbjct 1398 GCGGGAGGTAGAGCCGTGCTCGACGAGATTGAGAAGAACTTGGAT-TTATCCGAATGGCA 1456 Query 1332 TATGGAGCCTTCTCGGATGACTTTGAACCGGTTTGGGAATACTTCGAGTAGCTCGCTGTG 1391 |||||||| || ||||||| |||||||||||||| || |||||||||||||| || || Sbjct 1457 CATGGAGCCATCGAGGATGACGTTGAACCGGTTTGGTAACACTTCGAGTAGCTCACTTTG 1516 Query 1392 GTATGAGCTTGCGTATAGTGAGGCTAAAGGAAGGATTAAGAGAGGAGATAGGACTTGGCA 1451 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1517 GTATGAGCTTGCGTATAGTGAAGCTAAAGGAAGGATTAAGAGAGGAGATAGGACTTGGCA 1576 Query 1452 GATTGCTTTTGGGTCGGGTTTTAAGTGTAATAGTGCGGTTTGGAGAGCTTTGAGAACTAT 1511 |||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||| || Sbjct 1577 GATTGCTTTTGGATCGGGTTTTAAGTGTAATAGTGCAGTTTGGAAAGCTTTGAGAACGAT 1636 Query 1512 TGATCCG-TCCAAGGAGAAGACTAATCCATGGATTGATGAGATTCATGAGTTTCCGGTGC 1570 |||||| | | | ||||||||||||||||||||||||||||| |||| ||||| || | Sbjct 1637 TGATCCAATGGACG-AGAAGACTAATCCATGGATTGATGAGATTGATGACTTTCCTGTTC 1695 Query 1571 CCGTTCCCAGGAT-ATCTCCGGTGACATCTTCGT 1603 ||||| ||||| | |||| | ||||| |||| Sbjct 1696 AAGTTCCTAGGATCA-CTCCCATTACATCGTCGT 1728 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79969468185 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5